genome.fa.s79.2.7.7.80.10.50.1000.64.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167904.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_17, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  21107920

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   

This is table  64  of  121  ( 14423 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10976585--10976657	31	2.4	31	88	0	101	34	13	9	42	1.77
10976601--10976684	31	2.7	31	83	1	96	32	11	13	42	1.80
10976692--10976734	19	2.2	20	83	4	52	41	6	4	46	1.51
10979164--10979214	3	17.0	3	100	0	102	66	0	0	33	0.92
10982208--10982241	17	1.9	18	94	5	61	67	14	11	5	1.39
10982256--10982456	72	2.9	65	77	12	188	58	4	9	26	1.50
10982468--10982494	13	2.1	13	100	0	54	48	0	0	51	1.00
10983528--10983573	22	2.0	23	88	12	69	17	19	15	47	1.82
10985842--10986048	107	1.9	106	84	2	272	32	10	14	42	1.78
10986040--10986103	30	2.1	31	82	8	78	34	1	3	60	1.22
10986339--10986364	2	13.0	2	100	0	52	50	0	0	50	1.00
10997055--10997458	145	2.8	144	82	4	476	42	14	10	32	1.79
11006994--11007035	17	2.5	17	88	0	57	52	11	2	33	1.51
11008444--11011098	664	4.0	664	96	1	4955	31	15	10	41	1.82
11017490--11017518	9	3.3	9	95	4	51	10	0	0	89	0.48
11019529--11019582	26	2.0	27	96	3	101	20	22	0	57	1.41
11026623--11026670	19	2.7	18	83	6	62	70	2	8	18	1.22
11027299--11027347	18	2.8	18	84	3	55	83	0	8	8	0.81
11027295--11027349	18	3.3	17	76	19	53	83	0	9	7	0.81
11033094--11033138	7	5.8	8	89	10	67	75	0	0	24	0.80
11033080--11033124	9	4.9	9	82	15	56	73	0	0	26	0.84
11033094--11033138	16	2.9	16	84	15	67	75	0	0	24	0.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11040524--11040570	3	15.7	3	100	0	94	34	0	0	65	0.93
11042060--11042109	24	2.0	26	81	14	61	58	4	4	34	1.36
11042059--11042595	143	3.7	143	79	6	505	41	11	14	32	1.83
11042977--11043098	50	2.4	50	79	5	138	27	13	10	47	1.76
11043015--11043164	80	1.9	80	84	5	205	27	16	12	44	1.83
11043063--11043126	30	2.1	30	85	5	85	26	15	14	43	1.85
11043701--11043746	19	2.4	19	88	3	65	47	13	4	34	1.62
11044252--11044499	125	2.0	125	89	1	381	33	12	14	38	1.84
11045954--11046014	7	8.9	7	75	13	56	42	40	1	14	1.56
11045959--11046015	20	2.8	20	89	2	87	40	42	1	15	1.58
11045954--11046014	27	2.2	28	88	2	88	42	40	1	14	1.56
11050935--11050963	10	2.7	11	94	5	51	75	0	24	0	0.80
11052709--11052735	11	2.5	11	100	0	54	70	0	0	29	0.88
11053603--11053667	8	8.4	8	73	21	50	29	1	4	64	1.22
11053861--11053908	16	3.1	15	85	8	69	20	4	2	72	1.11
11054176--11054206	12	2.7	12	95	5	55	58	12	0	29	1.35
11054255--11054305	22	2.2	21	83	13	57	64	5	3	25	1.33
11063201--11063302	51	2.0	51	100	0	204	33	9	33	23	1.88
11068762--11068795	15	2.3	15	89	0	50	20	0	26	52	1.46
11068812--11068943	15	8.6	16	72	10	89	25	1	22	50	1.58
11068869--11068956	15	5.7	15	78	9	88	22	1	20	55	1.50
11068777--11068956	77	2.3	75	81	8	193	22	1	23	51	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11068896--11068958	31	2.0	32	90	3	101	28	0	19	52	1.46
11068914--11068975	8	7.9	8	73	10	56	25	1	22	50	1.59
11069211--11069255	3	15.3	3	84	13	51	28	2	0	68	1.01
11069352--11069385	3	11.3	3	100	0	68	35	0	0	64	0.94
11070120--11070166	24	2.0	24	87	8	69	14	4	10	70	1.31
11070781--11070948	81	2.1	81	86	2	230	39	18	11	30	1.86
11071344--11071612	57	4.7	56	79	7	190	32	17	20	30	1.95
11071314--11071586	28	9.6	28	74	8	178	33	16	20	28	1.95
11071410--11071586	58	3.1	57	81	4	171	33	17	19	29	1.95
11071485--11071612	29	4.4	29	85	2	159	32	15	20	32	1.94
11071849--11071903	28	2.0	28	85	7	76	16	18	1	63	1.39
11079300--11079385	41	2.0	42	93	4	147	34	6	11	46	1.67
11079341--11079370	11	2.7	11	100	0	60	33	10	10	46	1.71
11083051--11083123	11	7.0	11	68	12	55	35	6	10	46	1.66
11083049--11083138	40	2.2	42	86	6	121	37	5	10	46	1.61
11084786--11084815	2	15.0	2	92	0	51	53	0	0	46	1.00
11085297--11085330	16	2.1	16	88	0	50	23	8	5	61	1.47
11085708--11085750	16	2.7	16	79	13	52	69	2	0	27	1.00
11086828--11086865	19	2.0	20	89	5	60	7	0	44	47	1.32
11086851--11086945	7	14.1	7	69	8	54	18	1	34	45	1.57
11086888--11086965	26	3.0	27	76	10	81	21	1	30	46	1.60
11086851--11086955	13	8.0	13	70	13	54	19	0	33	46	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11088805--11088858	21	2.5	22	70	8	58	53	0	1	44	1.11
11090585--11090660	34	2.2	35	88	9	113	36	10	14	38	1.81
11093569--11093610	23	1.9	21	90	9	66	23	9	11	54	1.66
11093617--11093644	14	2.0	14	100	0	56	21	0	7	71	1.09
11097188--11097366	87	2.1	87	94	2	315	36	10	25	27	1.88
11101421--11101469	22	2.2	22	85	3	62	65	4	16	14	1.42
11107101--11107129	15	1.9	15	100	0	58	34	20	10	34	1.87
11108479--11108578	48	2.1	47	83	5	121	25	15	7	53	1.66
11108833--11108888	27	2.2	25	83	6	67	41	16	8	33	1.79
11110974--11111004	15	2.1	15	93	0	53	38	12	16	32	1.86
11111003--11111042	18	2.2	18	86	0	53	32	7	22	37	1.82
11111064--11111098	18	1.9	18	94	0	61	48	17	0	34	1.47
11111100--11111173	32	2.3	35	77	13	86	31	10	17	40	1.84
11111160--11111200	16	2.6	16	92	0	64	36	14	14	34	1.87
11111443--11111644	107	1.9	108	84	3	273	35	15	10	38	1.82
11111627--11111688	21	3.0	21	85	0	88	38	14	6	40	1.72
11111621--11111705	21	3.9	21	82	4	71	38	14	7	40	1.73
11112845--11112944	9	12.2	8	81	13	91	11	15	3	71	1.26
11112845--11112944	8	12.4	8	81	12	91	11	15	3	71	1.26
11112852--11112944	40	2.3	40	83	12	111	11	13	3	70	1.27
11112845--11112947	48	2.1	48	81	13	115	11	15	2	69	1.29
11112861--11112944	33	2.7	30	83	9	96	13	14	2	70	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11112878--11112947	7	9.1	7	86	9	68	12	14	2	70	1.29
11113303--11113368	29	2.3	29	83	0	78	10	4	13	71	1.29
11116293--11116323	2	15.5	2	100	0	62	0	0	51	48	1.00
11116970--11117067	47	2.1	46	83	5	117	24	13	7	55	1.63
11117508--11117564	25	2.3	26	79	11	66	36	8	7	47	1.62
11128121--11128151	16	1.9	16	100	0	62	80	0	12	6	0.89
11128122--11128158	7	5.0	7	87	12	56	83	0	13	2	0.74
11129191--11129466	49	5.7	48	78	8	236	30	10	13	46	1.77
11129196--11129539	98	3.6	96	80	9	346	28	11	13	46	1.77
11129190--11129539	97	3.6	98	79	10	332	29	11	13	46	1.78
11129766--11129814	26	2.0	24	84	8	62	16	8	0	75	1.03
11130791--11130859	36	2.1	35	84	13	92	21	5	8	63	1.44
11130811--11130843	12	2.6	13	95	4	59	24	0	9	66	1.20
11132526--11132569	23	1.9	23	90	0	70	31	4	6	56	1.46
11136560--11136590	2	15.5	2	100	0	62	0	48	0	51	1.00
11136664--11136710	23	2.0	23	91	0	76	36	12	31	19	1.89
11147286--11147324	19	2.1	19	85	9	53	10	15	5	69	1.34
11162019--11162088	33	2.1	33	91	0	113	47	2	12	37	1.57
11162014--11162087	19	4.2	19	71	16	68	44	2	12	40	1.56
11162067--11162268	101	2.0	101	92	0	334	40	7	12	39	1.72
11162963--11162992	3	9.7	3	92	7	51	30	0	0	70	0.88
11165072--11165121	9	5.4	9	79	15	50	10	6	10	74	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11165072--11165121	19	2.8	16	80	19	55	10	6	10	74	1.23
11165142--11165183	18	2.3	19	84	12	52	71	9	4	14	1.28
11165441--11165503	14	4.4	14	79	13	74	6	4	9	79	1.05
11166071--11166188	41	2.9	40	73	5	110	38	10	17	33	1.84
11165965--11166228	82	3.2	81	78	7	239	39	9	14	35	1.80
11167717--11167762	15	2.8	16	75	24	51	15	6	0	78	0.95
11168148--11168207	1	60.0	1	86	0	84	0	6	0	93	0.35
11168141--11168232	9	10.2	9	82	13	84	0	11	3	84	0.73
11168108--11168202	34	2.9	34	82	3	95	2	17	0	80	0.82
11168141--11168278	7	19.9	7	72	16	74	2	13	2	81	0.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121