genome.fa.s79.2.7.7.80.10.50.1000.118.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167904.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_17, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  21107920

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   

This is table  118  of  121  ( 14423 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20328006--20328050	24	1.9	23	82	13	56	51	0	0	48	1.00
20328031--20328083	16	3.5	16	75	21	60	64	0	0	35	0.94
20330973--20331153	89	2.0	89	89	2	274	27	17	11	44	1.82
20333014--20333077	26	2.4	27	80	14	64	43	3	6	46	1.44
20333087--20333169	42	2.0	40	81	9	96	50	1	0	48	1.08
20333192--20333245	14	3.7	14	76	16	56	62	0	0	37	0.95
20337623--20337654	15	2.1	15	100	0	64	18	18	6	56	1.62
20340536--20340584	23	2.1	22	82	14	55	26	2	12	59	1.44
20340571--20340647	30	2.6	29	75	8	73	36	1	2	59	1.19
20344837--20344881	19	2.4	19	92	0	72	53	6	8	31	1.58
20345118--20345160	19	2.3	19	84	8	52	51	6	2	39	1.42
20345506--20345548	19	2.3	19	84	8	52	51	6	2	39	1.42
20344950--20345731	388	2.0	388	100	0	1564	47	7	8	35	1.63
20347268--20347301	17	1.9	18	88	5	52	50	0	0	50	1.00
20349461--20349501	17	2.4	18	84	12	59	70	0	0	29	0.87
20350437--20350542	51	2.0	52	82	7	126	57	0	1	39	1.16
20350531--20350590	31	2.0	29	87	6	84	46	3	1	48	1.28
20354228--20354302	32	2.4	32	90	2	116	33	8	12	46	1.70
20358561--20358658	33	3.0	33	83	0	97	35	13	14	36	1.85
20358608--20358799	100	1.9	100	84	2	260	29	11	18	40	1.87
20364556--20364648	48	2.0	47	87	6	134	40	6	17	35	1.75
20364605--20365676	187	5.7	184	79	8	993	35	11	11	41	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20366473--20366554	28	3.1	27	75	8	80	21	4	23	50	1.68
20368179--20368223	21	2.1	21	84	8	56	28	2	8	60	1.39
20368721--20368753	15	2.1	17	88	11	52	36	21	0	42	1.53
20370105--20370335	127	1.8	127	82	5	297	37	14	12	35	1.84
20370105--20370365	127	2.1	127	80	5	287	35	13	13	37	1.84
20372507--20372549	21	2.0	21	90	0	68	39	2	16	41	1.61
20372874--20372958	6	13.8	6	71	14	57	12	5	2	78	1.02
20372874--20372946	30	2.4	29	82	13	78	12	6	2	78	1.06
20378376--20378643	64	4.1	64	73	11	181	23	22	11	43	1.85
20378492--20378672	66	2.8	63	74	8	166	23	20	12	43	1.86
20378969--20379006	3	12.7	3	100	0	76	34	0	0	65	0.93
20379859--20379949	5	17.8	5	71	21	57	16	6	0	76	0.98
20379864--20379966	26	3.9	26	73	24	83	19	5	0	74	1.01
20384048--20384090	18	2.2	20	88	8	63	67	0	0	32	0.91
20384047--20384090	9	4.7	9	80	8	52	65	0	0	34	0.93
20384164--20384199	18	2.0	18	88	0	54	63	2	2	30	1.22
20385384--20385431	17	2.8	17	81	6	53	14	2	6	77	1.06
20385405--20385450	24	2.0	24	88	12	71	10	6	4	78	1.08
20385788--20385849	29	2.1	29	93	0	106	41	4	8	45	1.55
20387600--20387632	4	8.2	4	100	0	66	51	24	0	24	1.48
20388733--20388818	42	2.0	42	81	0	100	31	10	5	52	1.59
20391872--20391934	29	2.1	29	82	2	72	46	3	12	38	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20402914--20402966	17	3.0	18	72	5	54	52	0	1	45	1.11
20403685--20403727	21	2.0	21	90	0	68	30	2	16	51	1.57
20405594--20405649	22	2.5	22	77	11	60	44	1	3	50	1.29
20407940--20407979	21	1.9	21	84	0	53	85	2	10	2	0.80
20410029--20410078	25	2.0	25	84	3	66	26	2	0	72	0.96
20417726--20417768	19	2.3	19	87	0	59	23	39	13	23	1.90
20419034--20419076	20	2.2	20	80	19	56	65	2	0	32	1.06
20419437--20419461	7	3.6	7	100	0	50	88	0	0	12	0.53
20422418--20422462	14	3.0	15	81	9	56	31	6	4	57	1.44
20423832--20423859	4	7.0	4	100	0	56	0	50	0	50	1.00
20424051--20424094	22	2.1	20	83	8	52	47	4	0	47	1.22
20424051--20424088	19	1.9	19	85	15	51	44	2	0	52	1.14
20425206--20425230	12	2.1	12	100	0	50	52	0	0	48	1.00
20425367--20425408	20	2.0	21	90	4	68	35	2	0	61	1.09
20430274--20430303	2	15.0	2	100	0	60	50	0	0	50	1.00
20441848--20441872	10	2.5	10	100	0	50	88	0	12	0	0.53
20444508--20444546	18	2.2	18	86	4	53	30	5	2	61	1.31
20447237--20447277	13	3.3	13	83	6	50	51	0	2	46	1.14
20447330--20447366	18	2.1	17	90	5	56	32	0	0	67	0.91
20447795--20447839	22	2.0	24	86	8	67	55	6	2	35	1.38
20448581--20448639	30	2.0	30	83	9	77	52	1	1	44	1.21
20448583--20448653	30	2.3	31	78	11	74	50	1	1	46	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20451560--20451842	141	2.0	141	92	1	469	25	17	13	43	1.85
20454553--20454585	2	16.5	2	100	0	66	51	0	0	48	1.00
20455295--20455349	25	2.2	25	83	6	67	49	0	0	50	1.00
20455303--20455355	25	2.2	24	93	3	88	45	0	0	54	0.99
20455425--20455486	13	4.9	13	74	7	56	29	4	0	66	1.12
20455443--20455468	11	2.4	11	100	0	52	26	0	0	73	0.84
20461787--20461819	14	2.5	14	90	9	52	51	12	0	36	1.39
20462056--20462087	14	2.4	13	94	5	55	84	3	6	6	0.86
20462358--20462395	20	1.9	20	89	10	60	68	2	5	23	1.23
20465228--20465275	24	2.0	24	95	0	87	50	14	0	35	1.44
20466729--20466765	19	2.0	18	89	5	56	43	8	10	37	1.69
20466769--20466811	19	2.3	19	84	8	52	53	4	2	39	1.34
20468356--20468621	133	2.0	133	97	1	509	34	6	10	47	1.64
20473568--20473637	29	2.4	29	90	0	104	35	2	4	57	1.33
20475632--20475706	30	2.4	30	80	8	80	46	0	4	49	1.20
20475669--20475729	24	2.5	25	73	5	63	52	0	1	45	1.10
20475782--20475821	16	2.4	17	87	8	64	50	0	0	50	1.00
20476388--20476457	29	2.4	30	83	11	83	62	0	2	34	1.10
20478522--20478548	13	2.1	13	100	0	54	44	7	40	7	1.60
20484601--20484625	12	2.1	12	100	0	50	24	16	0	60	1.36
20494706--20494751	21	2.2	21	84	7	58	19	6	0	73	1.04
20510446--20510497	2	26.0	2	84	0	68	7	0	50	42	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20510497--20510538	2	21.0	2	95	0	75	47	0	52	0	1.00
20516442--20516488	15	3.1	15	78	12	51	55	6	0	38	1.26
20517606--20517645	21	1.9	21	100	0	80	20	25	15	40	1.90
20518193--20518224	2	16.0	2	100	0	64	50	0	0	50	1.00
20518392--20518418	2	13.5	2	100	0	54	51	0	0	48	1.00
20519623--20519698	29	2.6	29	82	12	77	25	10	10	53	1.66
20520380--20520420	2	20.5	2	100	0	82	48	0	0	51	1.00
20525632--20525656	13	1.9	13	100	0	50	16	20	16	48	1.82
20526204--20526258	25	2.2	25	83	0	65	32	1	9	56	1.41
20526394--20526463	33	2.2	32	84	7	88	54	1	0	44	1.09
20526419--20526456	13	3.0	13	80	3	51	52	0	0	47	1.00
20526405--20526471	25	2.6	27	77	13	79	61	0	0	38	0.96
20527595--20527644	18	2.7	18	82	11	66	36	0	0	64	0.94
20527612--20527656	12	3.6	12	77	11	54	40	0	0	60	0.97
20527607--20527658	26	2.0	25	96	3	95	36	0	0	63	0.95
20527632--20527684	23	2.3	23	86	3	70	45	1	0	52	1.11
20527602--20527701	49	2.0	51	81	11	118	43	1	0	56	1.06
20533400--20533455	14	3.9	16	76	19	61	46	0	0	53	1.00
20533422--20533469	17	2.9	17	84	9	55	47	0	0	52	1.00
20536224--20536269	22	2.0	23	87	4	67	34	0	4	60	1.16
20536354--20536393	18	2.2	18	91	8	64	30	0	0	70	0.88
20536431--20536466	13	2.9	13	88	12	58	55	0	0	44	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20536509--20536573	33	1.9	34	87	9	98	52	7	1	38	1.40
20537415--20537468	28	2.1	27	83	13	69	42	1	0	55	1.10
20537838--20537868	2	15.5	2	93	0	53	51	3	0	45	1.17
20543565--20543658	21	4.5	21	75	14	70	14	0	31	53	1.42
20543544--20543657	28	4.1	28	72	13	92	16	0	31	50	1.51
20543584--20543686	49	2.1	49	81	3	118	18	0	30	50	1.53
20543678--20543727	14	3.6	14	75	20	50	20	2	26	52	1.57
20543667--20543740	28	2.6	28	75	8	78	18	2	31	47	1.63
20544037--20544078	3	14.3	3	95	5	77	30	0	0	69	0.89
20545582--20545624	3	14.3	3	100	0	86	67	0	0	32	0.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121