genome.fa.s79.2.7.7.80.10.50.1000.57.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167904.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_17, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  21107920

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   

This is table  57  of  121  ( 14423 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9750642--9750697	18	3.1	17	76	19	51	75	5	1	17	1.09
9751487--9751666	12	14.3	12	68	16	62	70	2	2	24	1.12
9751510--9751589	3	24.3	3	72	20	54	61	0	3	35	1.14
9751495--9751597	20	5.3	20	76	16	92	65	0	3	31	1.11
9751496--9751597	14	7.1	14	72	11	82	64	0	3	31	1.11
9751582--9751656	7	10.0	7	85	8	69	77	5	1	16	1.02
9751736--9752895	177	6.5	175	75	9	859	41	10	8	39	1.70
9751743--9752893	541	2.1	535	80	6	1252	41	10	8	39	1.70
9752791--9753009	114	1.9	113	83	5	280	33	12	9	44	1.74
9752472--9753366	471	1.9	467	79	6	1018	40	10	7	41	1.69
9752895--9755773	180	16.1	180	75	6	2065	41	9	8	40	1.68
9752895--9755774	542	5.4	537	75	8	1948	41	9	8	40	1.68
9757589--9757637	19	2.6	19	93	0	80	24	10	8	57	1.59
9757873--9757917	17	2.6	17	89	0	63	26	20	2	51	1.59
9758361--9758529	85	1.9	87	86	5	243	52	7	5	33	1.54
9764393--9764427	17	2.0	18	88	5	54	20	5	8	65	1.40
9768368--9768492	18	6.9	18	69	13	87	27	5	35	32	1.80
9768367--9768468	33	3.0	34	78	7	125	28	5	31	34	1.81
9768446--9768488	21	2.0	21	86	0	59	25	4	44	25	1.73
9768836--9768884	6	8.2	6	88	0	71	30	46	0	22	1.52
9771960--9772017	27	2.3	24	78	18	64	56	10	0	32	1.33
9772299--9772347	25	1.9	26	91	4	82	40	10	2	46	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9772573--9772610	20	2.0	20	89	5	60	60	5	0	34	1.19
9772846--9772934	40	2.3	40	86	3	119	22	61	0	15	1.33
9777903--9777970	34	2.0	34	83	11	86	38	13	14	33	1.85
9777987--9778070	34	2.5	33	84	7	98	40	10	9	39	1.73
9787467--9787510	23	1.9	23	86	9	63	20	4	2	72	1.13
9788414--9788469	26	2.2	24	78	6	58	64	7	5	23	1.40
9788548--9788596	13	3.9	12	76	7	53	57	2	0	40	1.10
9791459--9791514	7	6.9	8	77	18	62	73	12	0	14	1.11
9791461--9791516	16	3.3	18	92	7	91	75	10	0	14	1.06
9792631--9792673	14	3.1	14	83	12	54	60	0	2	37	1.10
9800503--9800693	47	4.0	47	83	6	251	26	10	21	41	1.85
9800781--9801286	47	10.0	48	72	14	308	28	11	21	38	1.89
9800411--9800982	284	2.0	284	96	0	1045	32	11	20	35	1.88
9800503--9801032	142	3.7	143	69	11	431	29	11	21	37	1.88
9800781--9801025	95	2.6	96	83	7	345	26	11	23	38	1.89
9801014--9801051	18	2.1	19	90	5	60	34	5	10	50	1.59
9800965--9801100	67	2.0	67	85	2	184	30	11	19	38	1.87
9800917--9801151	116	2.0	115	86	6	323	29	10	20	39	1.86
9801030--9801284	50	5.1	51	79	7	272	29	12	20	37	1.89
9801552--9801618	35	1.9	35	87	6	100	73	8	1	16	1.16
9801601--9801625	7	3.6	7	100	0	50	76	12	0	12	1.04
9801565--9801618	17	3.1	17	82	15	74	74	9	1	14	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9802939--9802983	17	2.6	18	86	13	67	68	0	0	31	0.89
9810652--9810698	19	2.4	20	89	3	78	14	6	0	78	0.93
9810651--9810699	20	2.4	21	83	10	75	14	6	0	79	0.91
9813337--9813382	17	2.6	18	86	3	67	71	13	0	15	1.14
9813313--9813372	7	8.4	7	77	18	54	71	15	0	13	1.14
9814684--9814721	18	2.1	19	90	5	60	57	0	7	34	1.28
9814606--9814978	191	1.9	192	90	2	599	46	5	12	36	1.64
9815852--9815895	23	2.0	22	86	4	61	75	4	4	15	1.14
9826945--9826994	25	2.1	23	82	14	57	64	2	18	16	1.39
9827520--9827602	41	2.0	40	86	6	114	30	14	19	36	1.91
9834709--9835047	178	1.9	175	86	7	488	34	13	8	43	1.75
9834711--9835047	59	5.7	58	84	5	437	34	13	8	43	1.75
9834711--9835045	119	2.9	116	87	4	496	34	13	8	43	1.74
9835060--9835142	6	14.5	6	72	17	70	79	2	3	14	0.97
9835070--9835120	21	2.4	21	87	9	68	80	3	3	11	0.98
9835060--9835142	33	2.6	32	86	7	107	79	2	3	14	0.97
9835060--9835142	17	4.9	16	80	18	80	79	2	3	14	0.97
9836006--9836030	13	1.9	13	100	0	50	88	0	0	12	0.53
9836031--9836079	21	2.2	24	85	10	68	61	8	8	22	1.51
9836134--9836301	3	55.7	3	70	18	54	69	2	2	25	1.14
9836227--9836302	17	4.4	16	76	15	71	76	0	2	21	0.91
9836233--9836311	24	3.3	24	76	13	74	78	0	3	17	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9836227--9836311	30	2.9	29	84	8	102	77	0	3	18	0.91
9836134--9836298	93	1.8	93	80	10	207	69	2	3	24	1.15
9836248--9836310	12	5.5	11	74	12	56	80	0	4	14	0.86
9836501--9836631	42	3.1	42	85	1	183	36	22	16	24	1.94
9837642--9837683	10	4.5	10	80	14	54	7	7	0	85	0.73
9846394--9846422	15	1.9	15	100	0	58	41	0	0	58	0.98
9846364--9846703	59	5.8	57	83	8	430	35	12	7	45	1.70
9846365--9846703	119	2.9	118	86	5	470	34	12	7	45	1.70
9846730--9846783	16	3.3	16	82	12	65	77	3	7	11	1.09
9847665--9847694	13	2.2	14	94	5	53	83	3	0	13	0.77
9847690--9847728	16	2.5	15	88	12	60	74	5	5	15	1.17
9847703--9847748	21	2.2	21	84	7	58	69	4	4	21	1.24
9847665--9847712	20	2.3	20	85	3	60	79	4	2	14	0.98
9847800--9847956	3	50.7	3	70	16	65	68	3	3	25	1.20
9847859--9847966	26	4.2	26	74	5	85	75	0	3	20	1.02
9847888--9847963	20	3.9	19	81	8	55	75	0	3	21	0.97
9859908--9859939	13	2.3	15	89	10	50	9	9	0	81	0.88
9860880--9860925	23	2.0	23	86	4	65	15	6	2	76	1.09
9879779--9879817	20	2.0	18	85	14	51	71	7	7	12	1.29
9880640--9880715	33	2.3	35	84	9	104	50	11	11	26	1.74
9880612--9880724	33	3.4	33	77	10	88	48	15	11	24	1.77
9883286--9883345	4	15.2	4	75	16	54	46	1	0	51	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9883314--9883360	24	2.0	24	87	4	69	46	2	2	48	1.25
9883575--9883639	28	2.3	27	80	17	69	43	3	3	50	1.33
9883592--9883682	24	3.7	25	76	15	84	42	3	1	52	1.24
9890780--9890865	30	2.9	30	80	0	91	38	9	1	51	1.42
9893594--9893665	21	3.3	21	70	20	58	30	2	29	37	1.72
9895519--9895552	13	2.5	13	85	4	50	52	0	0	47	1.00
9895508--9895573	29	2.2	31	84	13	84	50	0	0	50	1.00
9895508--9895573	15	4.3	16	74	16	68	50	0	0	50	1.00
9898754--9898811	26	2.2	27	78	9	66	34	3	31	31	1.74
9901406--9901434	2	14.5	2	100	0	58	48	0	0	51	1.00
9912115--9912211	31	3.1	31	72	16	110	44	11	12	31	1.78
9917794--9917833	12	3.2	12	89	3	53	52	10	0	37	1.35
9917804--9917833	13	2.2	14	94	5	53	53	13	0	33	1.40
9917934--9917966	13	2.5	13	95	0	57	66	3	6	24	1.28
9922509--9922570	28	2.2	29	82	5	74	32	6	4	56	1.46
9924398--9924455	30	1.9	30	100	0	116	31	6	6	55	1.53
9926418--9926448	2	15.5	2	100	0	62	51	0	0	48	1.00
9930605--9930630	2	13.0	2	100	0	52	50	0	0	50	1.00
9931580--9931630	3	16.7	3	91	4	84	1	0	29	68	1.00
9931629--9931661	3	11.0	3	100	0	66	33	0	0	66	0.92
9932252--9932277	7	3.7	7	100	0	52	88	0	0	11	0.52
9935605--9935647	22	2.0	22	81	9	52	37	9	18	34	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9936923--9936962	21	1.9	21	84	0	53	40	0	20	40	1.52
9937506--9937539	15	2.3	15	89	0	50	23	2	0	73	0.97
9938304--9938369	34	2.0	34	90	3	107	30	13	10	45	1.77
9938391--9938473	17	4.7	18	71	11	55	27	15	21	34	1.94
9938401--9938461	17	3.5	17	74	12	61	27	16	21	34	1.95
9938387--9938473	35	2.5	35	80	0	111	28	16	20	34	1.94
9940176--9940232	23	2.5	24	77	13	66	28	3	1	66	1.18
9940332--9940426	19	4.9	18	77	12	91	30	6	12	50	1.65
9940340--9940452	59	1.9	58	81	12	133	30	7	13	48	1.69
9943857--9943903	23	1.9	26	83	12	64	40	6	0	53	1.27

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121