genome.fa.s79.2.7.7.80.10.50.1000.32.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167904.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_17, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  21107920

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   

This is table  32  of  121  ( 14423 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5669574--5669599	1	26.0	1	100	0	52	0	0	0	100	0.00
5679430--5679466	8	4.6	8	86	0	56	43	0	0	56	0.99
5679430--5679484	16	3.6	16	80	11	62	47	0	0	52	1.00
5679456--5679507	22	2.5	22	93	6	90	50	0	0	50	1.00
5682799--5682886	35	2.5	35	78	8	99	20	13	13	52	1.74
5685735--5685765	13	2.4	13	94	0	53	51	29	6	12	1.65
5685772--5685825	20	2.7	20	82	8	65	42	31	7	18	1.78
5686950--5687305	177	2.0	178	95	0	642	35	16	11	36	1.85
5687470--5687496	2	13.5	2	100	0	54	51	0	0	48	1.00
5689336--5689368	16	1.9	18	88	11	52	21	9	0	69	1.15
5690080--5690114	3	11.7	3	100	0	70	68	0	0	31	0.90
5695241--5695290	22	2.3	22	82	6	57	44	10	2	44	1.49
5695838--5695890	8	6.4	8	77	14	54	50	1	0	47	1.12
5695843--5695906	33	2.0	32	84	9	85	48	1	1	48	1.20
5696002--5696054	26	2.0	26	85	7	72	28	5	1	64	1.27
5696950--5696982	13	2.6	13	90	4	50	66	0	3	30	1.06
5698896--5698944	12	4.3	11	78	17	55	67	2	2	28	1.13
5698957--5698994	16	2.3	17	86	4	51	78	0	13	7	0.94
5699103--5699131	12	2.5	12	94	5	51	10	0	0	89	0.48
5699860--5699888	14	2.1	14	100	0	58	27	13	13	44	1.82
5700152--5700430	40	7.1	40	73	10	198	40	14	12	31	1.84
5700110--5700430	118	2.7	115	79	7	306	41	14	12	31	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5700176--5700358	78	2.3	76	77	10	174	43	13	12	31	1.81
5706972--5706996	13	1.9	13	100	0	50	8	8	8	76	1.18
5707471--5707554	43	2.0	43	90	0	132	28	16	23	30	1.96
5717750--5717794	22	2.1	21	84	12	56	33	6	2	57	1.37
5721275--5721339	22	3.0	22	73	8	62	46	1	0	52	1.10
5721268--5721342	18	4.1	19	75	20	61	45	1	0	53	1.08
5721311--5721354	18	2.4	18	81	14	54	45	2	2	50	1.27
5722914--5723548	318	2.0	314	97	1	1200	36	18	20	24	1.95
5725848--5725967	59	2.0	59	96	0	222	26	25	15	33	1.95
5728325--5728389	30	2.2	30	83	5	78	18	1	58	21	1.47
5735482--5735511	13	2.4	13	94	5	53	63	3	0	33	1.11
5739226--5739256	16	2.0	16	93	6	55	25	0	0	74	0.82
5747972--5748019	18	2.6	18	83	3	51	4	27	2	66	1.21
5749724--5749764	19	2.2	19	90	0	64	29	7	29	34	1.84
5752212--5752269	20	2.9	19	85	12	73	44	0	0	55	0.99
5752596--5752639	22	2.0	23	81	4	54	72	2	18	6	1.17
5753414--5753476	32	2.0	32	93	0	108	57	15	4	22	1.57
5753771--5753988	100	2.2	96	78	13	219	44	5	8	40	1.60
5755112--5755153	12	3.6	12	81	18	61	69	9	0	21	1.17
5755123--5755160	11	3.4	11	80	20	51	71	5	0	23	1.07
5755112--5755160	23	2.1	23	100	0	98	69	8	0	22	1.14
5755272--5755305	17	2.1	17	88	5	52	61	0	2	35	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5756072--5756101	2	15.5	2	93	6	53	0	50	0	50	1.00
5761051--5761136	45	1.9	45	86	6	113	43	26	5	24	1.77
5761514--5761575	21	3.0	21	77	13	65	59	0	0	40	0.97
5762590--5762632	21	2.0	21	100	0	86	16	23	13	46	1.83
5764492--5764557	24	2.7	23	76	17	62	33	31	15	19	1.93
5765507--5767064	792	2.0	796	83	4	1985	25	28	19	25	1.99
5777313--5777353	16	2.5	16	96	4	73	31	21	2	43	1.66
5781375--5781408	6	5.5	6	92	3	50	61	2	35	0	1.11
5784986--5785020	2	18.0	2	94	5	63	51	0	0	48	1.00
5786152--5786189	3	13.0	3	94	5	69	65	0	0	34	0.93
5788412--5788502	44	2.0	45	97	2	175	14	29	6	49	1.68
5788302--5788609	154	2.0	154	98	0	589	17	25	13	42	1.87
5788458--5788657	110	1.8	110	97	0	382	20	24	14	41	1.89
5791681--5791714	6	5.5	6	92	3	50	61	2	35	0	1.11
5795288--5795337	2	25.0	2	95	0	91	50	0	2	48	1.12
5798619--5798661	21	2.0	21	100	0	86	13	18	9	58	1.62
5798983--5799036	21	2.6	21	75	21	51	53	0	5	40	1.24
5804258--5804341	36	2.3	36	81	4	89	54	7	4	33	1.49
5808186--5808215	2	15.0	2	100	0	60	0	50	0	50	1.00
5821646--5821688	2	21.5	2	100	0	86	48	0	0	51	1.00
5822060--5822143	36	2.3	36	81	4	89	54	7	4	33	1.49
5825982--5826011	2	15.0	2	100	0	60	0	50	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5830800--5830841	22	1.9	22	85	0	57	28	9	19	42	1.82
5837929--5838059	66	2.0	66	86	3	183	25	29	16	29	1.96
5840901--5840982	39	2.1	39	95	0	146	50	10	12	26	1.73
5842629--5842727	42	2.4	41	88	5	137	38	11	3	47	1.55
5842678--5842853	61	3.0	57	80	8	212	38	11	3	46	1.57
5842830--5842862	14	2.3	15	94	5	59	36	0	0	63	0.95
5843889--5844271	45	8.6	45	84	2	470	43	21	13	22	1.87
5843889--5844293	89	4.6	88	81	6	442	43	20	13	21	1.86
5844584--5844624	16	2.5	16	92	4	64	34	19	21	24	1.97
5845315--5845369	15	3.8	14	75	20	51	9	9	0	81	0.87
5845315--5845369	28	2.0	28	89	7	85	9	9	0	81	0.87
5845312--5845376	7	9.1	7	75	18	55	10	10	0	78	0.97
5845315--5845377	8	8.6	8	75	21	59	9	9	0	80	0.89
5852643--5852675	14	2.3	15	89	5	50	39	12	12	36	1.80
5855680--5855811	60	2.3	58	84	5	178	34	8	5	51	1.55
5855681--5855935	131	2.0	129	83	6	327	36	8	5	49	1.56
5855803--5856139	59	5.8	58	82	7	382	37	9	5	47	1.59
5855803--5856231	116	3.6	115	80	10	438	37	9	5	47	1.60
5855875--5855968	30	3.2	30	65	24	83	36	10	5	47	1.61
5856150--5856182	14	2.3	15	89	5	50	30	0	3	66	1.06
5856105--5856242	70	1.9	71	86	5	199	32	9	7	50	1.62
5857876--5857908	3	10.7	3	93	6	57	69	0	0	30	0.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5860578--5860630	17	3.1	17	75	5	52	45	0	3	50	1.19
5860993--5861049	18	3.1	18	74	5	51	36	1	3	57	1.26
5861049--5861090	22	1.9	22	90	0	66	52	0	0	47	1.00
5861560--5861602	19	2.3	19	80	11	52	32	4	4	58	1.39
5862171--5862231	24	2.9	20	71	19	52	47	1	0	50	1.10
5862410--5862443	14	2.4	14	90	9	52	64	0	0	35	0.94
5867704--5867752	23	2.1	23	92	0	80	28	12	10	48	1.73
5867944--5867968	3	8.3	3	100	0	50	68	0	0	32	0.90
5868692--5868726	17	2.0	18	88	5	54	57	0	0	42	0.99
5869045--5869072	12	2.3	12	100	0	56	89	10	0	0	0.49
5869031--5869074	15	2.9	15	82	0	52	84	11	0	4	0.77
5869628--5869676	20	2.5	20	96	0	89	26	36	12	24	1.91
5869876--5869909	3	11.3	3	100	0	68	64	0	0	35	0.94
5881372--5881840	109	4.4	109	84	5	598	20	18	12	47	1.81
5881355--5881825	211	2.2	211	85	4	631	19	19	13	46	1.83
5881710--5881868	36	4.4	37	70	8	110	23	18	10	47	1.78
5881908--5882077	68	2.5	67	75	8	155	25	20	11	41	1.86
5882023--5882382	180	2.0	179	87	0	522	20	18	14	46	1.84
5883822--5883871	18	2.8	18	79	11	57	24	0	4	72	1.02
5884238--5884317	31	2.7	32	77	11	80	48	31	1	18	1.56
5884262--5884309	15	3.1	15	88	5	69	50	33	2	14	1.55
5884260--5884322	13	4.4	14	82	11	65	49	30	1	19	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5885672--5885698	2	13.5	2	100	0	54	48	0	0	51	1.00
5887048--5887072	1	25.0	1	100	0	50	100	0	0	0	0.00
5889197--5889253	20	2.8	20	86	0	87	49	0	31	19	1.49
5892356--5892387	11	2.9	11	90	0	55	68	0	0	31	0.90
5894923--5894985	24	2.8	22	69	19	58	73	0	19	7	1.08
5895098--5895130	14	2.4	14	90	10	50	39	12	0	48	1.40
5897966--5897990	2	12.5	2	100	0	50	48	0	0	52	1.00
5898617--5898729	32	3.4	34	83	9	137	42	7	13	37	1.71
5900141--5900608	161	2.9	160	82	4	582	43	14	9	31	1.78
5900391--5900870	264	1.8	264	83	2	642	41	15	9	33	1.80

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121