genome.fa.s79.2.7.7.80.10.50.1000.117.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167904.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_17, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  21107920

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   

This is table  117  of  121  ( 14423 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20184214--20184274	25	2.4	25	81	8	70	65	4	0	29	1.13
20191333--20191361	13	2.2	13	100	0	58	13	34	6	44	1.71
20194271--20194305	12	2.8	12	91	4	52	17	0	2	80	0.84
20194455--20194526	21	3.5	20	78	16	67	20	5	4	69	1.26
20194445--20194541	41	2.5	40	80	14	112	18	6	3	72	1.19
20194447--20194527	21	3.9	21	73	13	62	20	4	3	70	1.22
20194532--20194582	20	2.5	21	87	6	77	11	11	5	70	1.32
20195453--20195497	21	2.1	21	84	8	56	17	4	2	75	1.07
20195462--20195538	40	1.9	40	84	10	104	16	6	1	75	1.08
20195584--20195674	27	3.2	27	67	24	69	40	7	14	37	1.74
20195576--20195971	59	6.7	58	83	7	449	44	6	12	36	1.67
20200021--20200052	10	3.2	10	95	0	55	87	0	9	3	0.64
20202166--20202379	41	5.0	41	82	9	266	24	17	21	36	1.94
20202212--20202446	41	5.0	48	69	24	178	24	18	20	36	1.95
20202174--20202350	91	2.0	90	91	1	291	24	16	20	37	1.93
20202328--20202433	54	2.0	54	98	0	203	20	19	22	36	1.95
20202196--20202475	95	3.0	95	84	6	324	23	18	21	36	1.95
20202382--20202566	42	4.4	42	85	1	201	23	17	22	35	1.95
20202747--20202782	6	5.8	6	93	6	63	13	0	2	83	0.76
20202747--20202818	7	10.1	7	78	11	51	16	1	4	77	0.99
20202891--20202933	14	2.9	15	83	13	54	32	2	2	62	1.20
20202910--20202989	21	3.9	21	74	11	76	25	5	2	67	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20202968--20203018	19	2.9	18	82	8	52	17	7	3	70	1.27
20202984--20203036	19	2.8	19	94	2	90	13	9	7	69	1.35
20203870--20203908	4	9.8	4	88	0	60	20	0	2	76	0.90
20203939--20204021	11	7.6	10	74	20	60	14	4	2	78	1.02
20203932--20204021	5	17.4	5	73	21	62	14	5	2	77	1.04
20203931--20204013	6	14.7	6	71	16	61	14	6	1	78	1.00
20203928--20204031	40	2.6	38	83	8	109	14	6	1	76	1.07
20203926--20204031	45	2.3	45	80	9	108	15	6	1	76	1.08
20204047--20204382	59	5.7	58	81	6	383	45	5	11	36	1.64
20204046--20204382	119	2.9	118	86	4	457	45	5	11	36	1.64
20204257--20204295	15	2.4	17	83	12	55	48	5	0	46	1.24
20209536--20209580	18	2.5	17	79	10	54	51	6	0	42	1.28
20225853--20225881	11	2.5	12	94	5	51	55	0	0	44	0.99
20231377--20231829	59	7.7	57	78	9	405	37	12	6	43	1.68
20231377--20231842	117	4.0	117	84	6	566	37	12	6	44	1.67
20231407--20231842	238	1.8	238	87	2	644	37	11	6	45	1.66
20231932--20231967	3	12.0	3	100	0	72	66	0	0	33	0.92
20231963--20231988	4	6.5	4	100	0	52	76	0	0	23	0.78
20232166--20232190	10	2.5	10	100	0	50	60	8	0	32	1.26
20234506--20234547	21	2.0	21	100	0	84	33	9	28	28	1.88
20239211--20239251	18	2.3	18	84	12	50	29	2	2	65	1.18
20242001--20242052	15	3.5	15	76	10	52	59	0	0	40	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20242013--20242091	25	3.2	25	75	12	83	55	0	0	44	0.99
20242223--20242291	31	2.3	30	82	2	84	50	8	4	36	1.53
20242814--20244174	693	2.0	693	97	0	2584	34	13	12	38	1.83
20245133--20245170	18	2.2	18	86	9	53	44	0	2	52	1.14
20252007--20252046	15	2.7	15	88	3	64	22	0	22	55	1.44
20252134--20252281	59	2.5	60	80	10	169	29	4	20	45	1.70
20252134--20252372	30	8.1	30	70	13	106	25	3	25	45	1.70
20252296--20252351	28	2.0	29	89	3	87	17	1	33	46	1.59
20252398--20252514	14	8.2	14	68	13	69	18	1	29	49	1.58
20252410--20252508	29	3.4	28	80	5	92	19	2	31	47	1.61
20252390--20252465	29	2.6	28	77	6	80	17	2	31	48	1.60
20252690--20252732	23	2.0	21	86	9	59	20	6	2	69	1.23
20253946--20253989	17	2.7	16	82	6	52	6	9	9	75	1.20
20253951--20253990	17	2.4	17	91	0	62	7	7	7	77	1.13
20255693--20255734	21	2.0	21	100	0	84	33	9	28	28	1.88
20262554--20262591	18	2.2	18	86	9	53	44	0	2	52	1.14
20269414--20269453	15	2.7	15	88	3	64	22	0	22	55	1.44
20269538--20269685	59	2.5	60	80	10	169	29	4	20	45	1.70
20269538--20269776	30	8.1	30	70	13	106	25	3	25	45	1.70
20269700--20269755	28	2.0	29	89	3	87	17	1	33	46	1.59
20269802--20269918	14	8.2	14	68	13	69	18	1	29	49	1.58
20269814--20269912	29	3.4	28	80	5	92	19	2	31	47	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20269794--20269869	29	2.6	28	77	6	80	17	2	31	48	1.60
20270094--20270136	23	2.0	21	86	9	59	20	6	2	69	1.23
20270185--20270233	21	2.4	21	78	21	59	69	8	0	22	1.14
20271353--20271396	17	2.7	16	82	6	52	6	9	9	75	1.20
20271358--20271397	17	2.4	17	91	0	62	7	7	7	77	1.13
20273100--20273141	21	2.0	21	100	0	84	33	9	28	28	1.88
20277796--20277836	18	2.3	18	84	12	50	29	2	2	65	1.18
20280592--20280638	12	4.0	12	83	5	60	61	0	0	38	0.96
20280598--20280646	23	2.1	23	92	0	80	61	0	0	38	0.96
20280813--20280881	31	2.3	30	82	2	84	50	8	4	36	1.53
20282808--20282832	2	12.5	2	100	0	50	48	0	0	52	1.00
20283786--20283852	32	2.1	32	82	0	80	46	2	1	49	1.26
20284541--20284602	22	2.7	23	80	7	65	48	0	0	51	1.00
20285032--20285067	2	18.0	2	94	0	63	50	0	2	47	1.15
20285775--20285885	30	3.8	28	81	11	125	42	0	0	55	1.12
20285778--20285855	31	2.4	31	81	12	95	43	0	1	55	1.08
20286393--20286447	16	3.4	16	71	16	51	52	0	0	47	1.00
20286393--20286453	32	2.0	31	84	15	83	52	0	0	47	1.00
20288953--20289038	30	2.9	28	75	17	77	46	0	2	51	1.13
20289046--20289090	21	2.0	23	87	8	67	33	0	2	64	1.06
20295119--20295161	22	2.0	22	90	0	68	30	2	30	37	1.70
20295277--20295345	35	1.9	36	83	13	90	55	5	0	39	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20295548--20295572	13	1.9	13	100	0	50	88	0	0	12	0.53
20295763--20295809	21	2.4	21	83	13	57	44	6	0	48	1.28
20297167--20297193	3	9.0	3	100	0	54	66	33	0	0	0.92
20304334--20304377	20	2.2	21	88	8	65	38	0	0	61	0.96
20304410--20304477	22	3.0	23	69	16	61	44	0	1	54	1.09
20304468--20304504	13	2.8	13	91	0	56	27	2	0	70	1.01
20304562--20304596	2	18.0	2	94	5	63	48	0	51	0	1.00
20314271--20314298	3	9.3	3	100	0	56	0	0	64	35	0.94
20314337--20314407	24	3.0	24	72	0	70	12	5	59	22	1.54
20314440--20314503	30	2.1	30	82	5	76	7	9	56	26	1.58
20314452--20314543	42	2.2	42	84	0	112	8	9	57	23	1.59
20314497--20314673	30	6.0	30	66	11	96	11	7	56	24	1.60
20314386--20314748	117	3.0	117	89	3	501	12	8	55	23	1.63
20314593--20314648	18	3.1	18	75	10	60	10	8	58	21	1.58
20314598--20314660	18	3.5	17	72	8	54	7	7	60	23	1.51
20314677--20314828	21	7.5	21	67	16	79	11	8	57	23	1.61
20314481--20314773	42	7.3	41	68	9	158	11	8	56	23	1.62
20314721--20314828	57	1.9	57	88	3	164	11	8	57	23	1.60
20314760--20314894	30	4.3	30	72	10	99	13	4	55	26	1.57
20314757--20314841	36	2.4	36	82	7	118	9	5	57	27	1.53
20314517--20314787	117	2.3	115	92	1	400	12	7	56	23	1.62
20314778--20314861	42	2.0	42	83	0	105	13	4	55	26	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20314928--20315005	24	3.2	24	87	0	111	12	5	55	26	1.58
20314880--20314973	42	2.2	42	80	0	98	11	6	56	25	1.58
20319776--20319829	27	2.0	27	100	0	108	29	14	11	44	1.80
20325747--20325789	19	2.1	21	87	8	63	48	2	0	48	1.14
20326753--20326785	14	2.3	15	89	5	50	18	0	6	75	1.00
20326978--20327032	20	2.7	21	77	5	67	32	1	7	58	1.36
20327020--20327065	14	3.2	15	81	9	51	23	0	15	60	1.34
20327922--20327965	22	2.0	22	86	4	61	43	2	0	54	1.12
20327922--20327973	22	2.3	22	83	3	59	40	1	1	55	1.22
20328033--20328095	6	10.8	6	79	16	62	66	0	0	33	0.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121