genome.fa.s79.2.7.7.80.10.50.1000.62.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167904.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_17, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  21107920

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   

This is table  62  of  121  ( 14423 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10495823--10495872	26	1.9	26	95	0	91	26	26	20	28	1.99
10498700--10498752	26	2.0	26	92	0	88	33	24	15	26	1.95
10496009--10501260	877	6.0	867	83	7	6067	25	24	24	25	2.00
10501541--10501793	139	1.8	139	86	3	366	21	26	30	21	1.99
10502511--10502645	68	2.0	68	88	0	198	14	43	20	21	1.87
10502833--10502884	26	2.0	26	92	0	86	32	21	17	28	1.96
10505899--10505951	26	2.0	26	92	0	88	28	24	18	28	1.98
10506569--10506621	26	2.0	26	96	0	97	26	24	20	28	1.99
10513149--10513199	26	2.0	26	96	0	93	29	25	17	27	1.98
10514049--10514101	26	2.0	26	92	0	88	28	24	18	28	1.98
10514942--10514994	26	2.0	26	92	0	88	28	24	18	28	1.98
10513079--10516953	891	4.3	891	88	2	5396	25	25	24	25	2.00
10515833--10515885	26	2.0	26	96	0	97	26	28	18	26	1.98
10516723--10516775	26	2.0	26	85	7	72	30	22	15	32	1.94
10517527--10517605	26	3.0	26	96	0	140	27	24	20	27	1.99
10518439--10518517	26	3.0	26	96	0	140	27	24	20	27	1.99
10520214--10520262	26	1.9	25	95	4	89	24	26	20	28	1.99
10520681--10520731	27	1.9	26	92	4	84	25	27	17	29	1.98
10520201--10521130	459	2.0	460	87	5	1340	24	23	25	27	2.00
10521571--10521621	26	2.0	26	96	0	93	25	25	19	29	1.99
10520668--10525621	898	5.5	896	79	9	5053	25	25	24	25	2.00
10524133--10524185	26	2.0	26	96	0	97	28	26	18	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10524318--10524370	26	2.0	26	92	0	88	28	24	18	28	1.98
10524050--10524399	185	1.9	185	90	0	556	21	29	26	22	1.99
10525737--10526031	147	2.0	147	99	0	581	40	4	8	46	1.55
10527045--10527089	22	2.1	22	91	4	74	73	0	2	24	0.95
10530153--10530182	11	2.7	11	94	0	51	0	10	0	90	0.47
10530153--10530182	16	1.9	15	93	6	51	0	10	0	90	0.47
10535156--10535413	142	1.8	144	85	3	369	32	13	12	41	1.81
10537225--10537251	7	3.9	7	100	0	54	70	0	0	29	0.88
10561235--10561312	39	2.0	39	94	0	138	30	12	7	48	1.69
10565098--10565147	20	2.6	19	77	20	59	40	0	0	60	0.97
10567483--10567543	29	2.1	29	93	0	104	36	14	21	27	1.93
10568691--10568740	24	2.1	24	96	0	91	72	8	0	20	1.10
10569208--10569302	25	3.6	25	70	19	66	46	0	8	45	1.33
10571336--10571369	17	2.0	17	88	0	50	70	0	0	29	0.87
10571336--10571455	14	8.8	14	66	14	54	60	0	1	37	1.13
10571386--10571446	25	2.4	26	81	8	72	62	1	1	34	1.15
10572879--10572946	12	5.7	12	89	0	91	11	1	17	69	1.26
10572863--10572943	24	3.4	24	81	1	74	14	1	16	67	1.29
10572874--10572948	6	12.5	6	78	0	78	13	1	16	69	1.26
10572906--10572948	9	4.8	9	88	0	50	11	0	20	67	1.22
10574167--10574228	11	5.9	11	73	21	53	72	12	0	14	1.12
10575191--10575251	27	2.3	25	79	20	70	72	3	1	22	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10577458--10577617	85	1.9	85	96	0	293	50	8	13	27	1.71
10578991--10579378	142	2.7	141	78	7	367	30	12	14	42	1.83
10580944--10581776	418	2.0	422	84	2	1086	38	13	10	37	1.79
10587119--10587182	34	1.9	33	83	3	83	43	12	10	32	1.77
10587132--10587204	33	2.2	34	85	2	94	43	8	15	32	1.76
10587293--10587330	19	2.1	19	85	5	51	34	7	10	47	1.67
10589100--10589137	6	6.5	6	81	6	51	0	78	5	15	0.91
10589100--10589136	11	3.3	11	85	7	56	0	78	5	16	0.93
10589100--10589137	17	2.2	18	85	4	51	0	78	5	15	0.91
10594737--10594780	22	2.0	22	95	0	79	31	11	13	43	1.80
10594922--10594996	25	3.1	25	81	5	84	16	28	14	41	1.87
10598629--10598671	22	2.0	22	95	0	77	32	11	11	44	1.77
10603423--10603474	21	2.7	19	80	13	70	50	0	0	50	1.00
10603426--10603471	21	2.2	21	92	3	76	47	0	0	52	1.00
10605562--10605888	157	2.0	161	90	4	518	46	17	12	24	1.82
10609226--10609316	44	2.1	44	87	0	128	36	15	16	31	1.90
10609288--10609815	48	10.9	47	80	6	536	40	19	11	28	1.86
10609302--10609815	98	5.3	94	82	7	537	40	19	11	28	1.86
10610568--10610605	17	2.3	17	90	4	60	5	10	0	84	0.77
10610568--10610609	9	4.7	9	77	11	50	4	11	0	83	0.79
10617972--10617998	14	1.9	14	100	0	54	55	0	0	44	0.99
10623170--10623207	15	2.6	15	87	4	60	86	0	13	0	0.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10623382--10623420	20	2.0	20	100	0	78	35	17	15	30	1.91
10624456--10624524	33	2.1	34	86	8	97	59	2	0	37	1.12
10634848--10634905	24	2.4	24	97	0	107	48	12	12	27	1.76
10642506--10642530	9	2.8	9	100	0	50	44	32	12	12	1.78
10643206--10643268	30	2.1	31	82	14	78	39	20	6	33	1.78
10645545--10645583	2	19.5	2	100	0	78	48	0	0	51	1.00
10651886--10651922	14	2.6	14	95	0	65	27	29	13	29	1.94
10660187--10660214	14	2.0	14	100	0	56	0	7	0	92	0.37
10660190--10660214	13	1.9	13	100	0	50	0	4	0	96	0.24
10662044--10662075	3	10.7	3	93	0	55	3	0	28	68	1.04
10663312--10663388	15	4.9	15	72	24	54	59	0	3	36	1.16
10674918--10676069	161	7.2	161	82	4	1223	42	16	9	32	1.79
10674930--10676048	320	3.5	320	83	3	1307	42	16	9	31	1.79
10675864--10675901	19	2.1	19	85	5	51	42	21	10	26	1.85
10677060--10677096	13	2.8	13	91	0	65	59	8	8	24	1.53
10684327--10684380	22	2.4	23	81	3	65	64	0	18	16	1.29
10687035--10687065	16	1.9	16	93	0	53	83	0	16	0	0.64
10689604--10689649	20	2.3	20	92	7	76	80	4	6	8	1.01
10689603--10689649	19	2.3	21	85	14	71	78	4	8	8	1.07
10709714--10709746	6	5.5	6	96	0	57	45	18	0	36	1.49
10725892--10725945	19	2.8	19	86	8	65	44	37	0	18	1.50
10725917--10725991	19	3.9	19	77	3	80	36	40	0	24	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10739354--10739404	21	2.4	21	80	0	57	70	1	21	5	1.18
10739348--10739404	23	2.4	23	79	2	60	71	3	19	5	1.19
10739374--10739458	24	3.3	26	74	12	77	57	3	31	7	1.42
10739364--10739425	24	2.6	24	89	2	90	58	3	30	8	1.43
10741863--10742530	245	2.8	231	79	10	729	41	10	5	42	1.62
10742740--10742772	17	1.9	17	93	0	57	30	6	6	57	1.47
10745324--10745356	16	2.1	16	94	0	57	39	0	12	48	1.40
10750123--10750158	3	12.0	3	93	0	63	66	2	0	30	1.06
10753555--10753593	16	2.5	16	87	4	53	15	10	20	53	1.70
10753567--10753602	16	2.2	17	90	9	58	16	5	16	61	1.53
10758240--10758310	28	2.6	26	79	16	72	69	4	5	21	1.27
10758834--10758980	51	2.8	52	81	6	174	35	17	8	38	1.80
10759390--10759683	86	3.4	85	79	3	297	37	11	18	33	1.86
10759811--10759949	56	2.5	56	77	4	147	40	17	22	20	1.91
10764878--10764918	17	2.3	18	87	4	57	68	2	4	24	1.22
10765475--10765618	51	2.8	51	73	10	132	34	17	9	38	1.83
10766469--10766602	63	2.1	64	78	13	152	32	13	11	42	1.81
10766483--10766622	63	2.3	59	83	6	163	31	14	12	41	1.83
10767067--10767224	84	1.9	83	90	1	253	36	9	10	44	1.71
10767977--10768063	16	5.7	15	80	8	77	45	1	4	48	1.30
10767977--10768072	31	3.1	31	79	8	97	46	1	4	47	1.28
10768625--10768661	19	1.9	19	88	0	56	59	2	0	37	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10768671--10768709	21	2.0	21	85	10	55	48	0	2	48	1.15
10768698--10768746	21	2.3	22	79	13	57	51	2	0	46	1.12
10769735--10769769	13	2.6	13	90	4	52	45	5	11	37	1.64
10771220--10771288	20	3.2	20	70	18	66	39	5	10	44	1.62
10772117--10772155	20	2.0	20	85	5	53	56	2	0	41	1.13
10778704--10778762	26	2.3	26	81	0	64	22	8	3	66	1.34
10779039--10779078	3	13.3	3	100	0	80	35	0	0	65	0.93
10779176--10779212	17	2.3	17	86	9	51	51	2	8	37	1.46
10781876--10781964	32	2.8	33	77	8	94	32	12	13	41	1.82
10783971--10784296	162	2.0	162	92	0	535	28	12	10	47	1.75

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121