genome.fa.s79.2.7.7.80.10.50.1000.96.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167904.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_17, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  21107920

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   

This is table  96  of  121  ( 14423 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16332180--16332308	49	2.6	47	80	11	152	27	3	1	68	1.14
16332166--16332308	52	2.8	52	77	15	152	27	3	1	67	1.15
16333116--16333150	11	3.2	11	91	0	52	14	5	0	80	0.89
16333400--16333435	14	2.5	15	86	9	56	61	2	0	36	1.11
16336552--16336631	35	2.3	35	84	0	97	31	13	20	35	1.91
16338843--16338912	35	2.0	35	91	0	113	58	5	1	34	1.31
16339700--16339760	27	2.3	27	91	0	95	11	6	47	34	1.66
16340519--16340557	6	6.3	6	82	5	51	76	0	2	20	0.90
16340777--16340812	15	2.5	15	95	4	65	55	13	0	30	1.39
16344410--16344461	14	3.7	14	79	7	61	34	0	0	65	0.93
16345966--16346016	3	17.0	3	95	0	93	33	1	0	64	1.05
16346152--16346280	52	2.5	50	78	2	141	39	13	6	40	1.70
16346423--16346726	140	2.1	145	80	10	365	35	7	6	50	1.57
16347716--16347763	11	4.2	11	78	7	51	56	2	2	39	1.23
16356434--16356463	12	2.5	12	94	0	51	56	0	0	43	0.99
16358344--16358368	13	1.9	13	100	0	50	28	16	24	32	1.96
16358436--16358482	24	2.0	24	84	16	62	42	2	0	55	1.12
16359490--16359679	62	3.1	60	77	10	186	34	13	14	37	1.85
16362221--16362341	53	2.3	53	82	4	147	29	22	5	42	1.77
16362221--16362378	52	3.0	52	77	6	158	28	20	5	44	1.74
16363251--16363392	52	2.8	51	80	6	144	29	20	6	43	1.76
16364255--16364396	52	2.7	51	80	10	144	30	21	5	41	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16364691--16364746	25	2.2	25	84	6	69	17	28	8	44	1.79
16365182--16365285	52	2.0	52	90	3	165	26	24	7	41	1.82
16370904--16370943	21	2.0	20	85	5	53	35	0	0	65	0.93
16371320--16371358	20	2.0	20	90	5	62	25	0	5	69	1.09
16372412--16372447	18	2.1	17	89	5	54	80	0	16	2	0.83
16372629--16373157	48	11.0	48	79	9	540	40	18	11	29	1.86
16384984--16385023	22	1.9	20	85	10	53	37	0	0	62	0.95
16386326--16386374	23	2.1	23	85	7	64	28	16	6	48	1.69
16386508--16386547	8	4.9	8	87	3	53	85	0	2	12	0.71
16386712--16386753	2	21.0	2	100	0	84	50	0	0	50	1.00
16387540--16387575	18	1.9	19	88	5	56	25	5	0	69	1.10
16387888--16387987	22	4.5	22	71	18	73	44	0	1	55	1.06
16387906--16387994	5	17.2	5	73	15	58	41	0	2	56	1.12
16387902--16387936	6	6.2	6	93	6	56	45	0	0	54	0.99
16387949--16388014	25	2.6	26	79	13	66	36	1	3	59	1.22
16388537--16388594	25	2.4	25	82	8	75	50	0	1	48	1.11
16396442--16396481	2	20.0	2	89	0	62	47	2	2	47	1.29
16400277--16400310	2	17.0	2	100	0	68	50	0	0	50	1.00
16400429--16400500	29	2.4	29	81	4	81	48	1	4	45	1.30
16402258--16402327	27	2.6	26	75	20	63	42	0	7	50	1.30
16402361--16402404	21	2.0	21	82	13	52	52	2	6	38	1.41
16403352--16403404	23	2.2	25	80	12	67	45	0	1	52	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16405320--16405365	20	2.2	21	81	14	60	41	10	2	45	1.51
16405788--16405951	5	33.2	5	66	14	72	52	5	4	37	1.46
16405799--16405865	19	3.4	19	81	6	62	53	1	7	37	1.38
16405909--16405974	25	2.5	25	85	7	78	51	10	0	37	1.37
16405896--16405977	10	8.4	10	68	20	57	52	9	0	37	1.35
16410348--16410395	20	2.3	21	89	3	71	62	4	4	29	1.32
16410662--16410749	29	3.1	28	72	6	81	50	2	2	45	1.27
16411198--16411270	28	2.6	28	86	2	94	47	0	1	50	1.09
16411252--16411310	15	3.9	16	75	18	56	50	0	1	47	1.11
16411317--16411380	33	2.0	32	84	3	83	48	0	3	48	1.17
16411342--16411417	28	2.8	28	82	6	93	48	1	1	48	1.18
16412506--16413168	221	3.0	217	78	8	596	54	6	7	30	1.55
16412564--16412975	222	1.9	221	81	4	508	56	6	7	30	1.51
16413072--16413109	17	2.2	18	85	4	51	60	0	7	31	1.25
16413546--16413603	20	2.7	22	76	10	66	51	5	5	37	1.46
16415216--16415248	16	2.1	16	88	11	50	33	0	0	66	0.92
16415235--16415273	10	3.9	10	83	12	53	46	0	2	51	1.14
16415469--16415509	19	2.2	19	86	0	55	29	0	0	70	0.87
16418935--16418974	21	2.0	20	85	14	55	40	5	17	37	1.72
16419593--16419633	12	3.4	12	79	0	55	51	0	0	48	1.00
16419591--16419657	22	3.0	22	72	16	66	52	0	0	47	1.00
16419595--16419665	22	3.1	22	71	18	65	46	0	0	53	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16430116--16430164	17	2.9	16	82	14	55	65	4	6	24	1.33
16430106--16430148	15	2.9	15	81	18	54	74	0	4	20	1.00
16435861--16435897	7	5.0	7	87	12	56	81	2	2	13	0.92
16438184--16438246	9	7.3	9	83	7	69	76	6	1	15	1.07
16438184--16438247	8	7.6	8	87	5	74	75	6	1	17	1.09
16438200--16438253	8	6.5	8	85	6	72	74	3	3	18	1.12
16438191--16438247	17	3.4	16	88	7	78	75	5	1	17	1.07
16444706--16444735	12	2.5	12	94	0	51	56	0	0	43	0.99
16446705--16446751	24	2.0	24	84	16	62	42	2	0	55	1.12
16447762--16447927	63	2.6	63	80	7	183	34	13	15	36	1.87
16448299--16448422	64	2.0	64	85	4	171	31	14	13	40	1.85
16450450--16450595	52	2.8	50	80	9	159	30	17	6	45	1.73
16450881--16450928	25	1.9	25	91	0	78	22	31	2	43	1.65
16452480--16452626	52	2.8	52	84	6	190	29	20	7	42	1.79
16453506--16453650	52	2.8	53	84	8	192	29	21	5	43	1.75
16456421--16456458	2	19.5	2	94	5	69	50	0	50	0	1.00
16459710--16459748	19	2.0	20	90	5	62	28	0	2	69	1.02
16460776--16460807	12	2.8	11	90	9	55	87	0	12	0	0.54
16461014--16461402	48	7.9	49	77	7	315	40	19	11	29	1.86
16461008--16461339	149	2.2	149	86	3	454	40	19	10	28	1.85
16461024--16461402	100	3.8	97	81	5	404	40	18	11	29	1.85
16461427--16461620	48	4.1	48	82	5	225	40	18	11	30	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16461296--16461531	129	1.8	131	85	1	341	37	18	13	31	1.89
16474578--16474626	23	2.1	23	88	0	71	30	18	6	44	1.74
16474754--16474813	24	2.5	25	84	10	72	80	0	13	6	0.91
16474759--16474817	28	2.1	27	84	9	75	81	0	13	5	0.85
16475448--16475494	15	3.3	14	74	14	51	17	8	6	68	1.37
16475805--16475840	18	1.9	19	88	5	56	25	5	0	69	1.10
16476155--16476255	23	4.5	22	70	19	66	44	0	0	54	1.06
16476174--16476262	5	17.2	5	73	15	58	41	0	2	56	1.12
16476173--16476204	6	5.7	6	92	7	50	50	0	0	50	1.00
16476217--16476282	25	2.6	26	79	13	66	36	1	3	59	1.22
16476830--16476886	25	2.3	25	85	8	73	49	0	1	49	1.11
16478695--16478738	22	2.0	21	82	4	52	15	4	2	77	1.04
16479134--16479159	12	2.2	12	100	0	52	30	23	15	30	1.95
16479625--16479668	23	1.9	23	85	0	61	6	6	6	79	1.06
16479759--16480274	116	4.4	116	90	5	805	44	8	12	34	1.72
16479769--16480274	57	8.7	56	88	7	721	44	8	12	34	1.73
16487047--16487102	12	4.4	12	77	18	60	33	0	0	66	0.92
16487043--16487094	14	3.9	14	80	12	65	34	0	0	65	0.93
16491365--16491427	26	2.3	26	74	12	65	49	1	1	47	1.20
16493280--16493323	21	2.0	21	82	13	52	52	2	6	38	1.41
16494279--16494338	27	2.4	24	81	10	68	40	1	3	55	1.27
16495847--16495931	12	7.0	12	74	20	70	74	1	2	22	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16495851--16495922	36	2.0	35	84	7	92	73	1	1	23	0.99
16496735--16496773	3	14.3	3	84	15	50	69	0	0	30	0.89
16496731--16496773	16	2.7	15	89	7	59	72	0	0	27	0.85
16496755--16496913	5	32.6	5	69	12	89	52	5	4	37	1.43
16496736--16496913	10	17.8	10	72	11	89	55	4	3	36	1.39
16496874--16496916	12	3.5	12	82	17	61	53	6	0	39	1.28
16496876--16496947	28	2.7	27	85	8	85	56	9	1	31	1.40
16496876--16496945	13	5.3	13	70	14	54	55	10	1	32	1.42
16497312--16497436	55	2.2	56	80	10	141	38	16	20	24	1.92
16499813--16499932	62	1.9	62	94	0	213	30	15	11	43	1.82

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121