genome.fa.s79.2.7.7.80.10.50.1000.30.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167904.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_17, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  21107920

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   

This is table  30  of  121  ( 14423 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5225540--5225595	20	2.8	20	80	0	67	50	3	1	44	1.29
5226056--5226080	12	2.1	12	100	0	50	36	8	0	56	1.29
5229376--5229414	20	2.0	20	84	0	51	15	0	30	53	1.42
5229402--5229519	16	7.4	16	83	7	141	18	0	32	48	1.54
5229387--5229519	31	4.2	32	82	12	152	18	0	32	48	1.54
5229918--5229959	17	2.4	18	88	4	59	76	2	0	21	0.90
5230357--5230381	13	1.9	13	100	0	50	8	28	40	24	1.83
5230601--5230638	20	1.9	19	89	5	58	2	2	15	78	0.97
5231268--5231320	23	2.3	23	87	9	74	30	18	20	30	1.97
5231298--5231495	88	2.3	87	85	2	263	38	18	21	21	1.93
5231583--5231626	22	2.0	22	90	0	70	34	20	20	25	1.97
5231399--5232028	109	5.8	110	81	3	682	40	18	19	21	1.91
5231386--5232029	219	2.9	218	84	2	785	40	18	19	21	1.91
5232308--5232403	41	2.3	41	85	7	124	33	12	19	34	1.90
5234134--5234181	25	1.9	25	91	8	80	2	8	2	87	0.70
5234125--5234183	27	2.1	28	87	3	84	3	6	3	86	0.78
5234148--5234187	21	1.9	21	89	0	62	2	5	5	87	0.73
5234134--5234185	1	52.0	1	78	0	50	1	7	1	88	0.66
5240665--5240800	30	4.6	30	74	10	104	22	0	29	47	1.56
5240672--5240811	58	2.4	58	83	4	176	22	0	30	45	1.58
5240835--5240895	16	3.8	16	84	2	77	19	4	27	47	1.70
5240863--5240918	16	3.5	17	88	7	64	21	3	33	41	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5240874--5240961	41	2.2	40	83	6	106	23	2	28	45	1.65
5242769--5242806	13	2.9	13	100	0	76	31	7	31	28	1.86
5245579--5245610	16	2.0	16	93	0	55	65	0	3	31	1.08
5245578--5245613	16	2.3	15	86	9	54	69	0	2	27	1.02
5248926--5248997	37	1.9	37	85	0	99	38	6	8	45	1.61
5249050--5249088	13	3.0	13	80	0	51	41	0	0	58	0.98
5249066--5249138	31	2.2	34	85	7	98	52	0	0	47	1.00
5258016--5258047	16	2.1	15	94	5	55	43	0	0	56	0.99
5258050--5258085	11	3.6	10	85	14	56	61	0	0	38	0.96
5258178--5258206	15	2.0	15	93	6	51	34	3	0	62	1.12
5258487--5258520	9	3.6	9	85	14	50	35	0	0	64	0.94
5258097--5258701	253	2.4	243	84	8	806	37	8	3	50	1.51
5258566--5258794	91	2.5	91	93	2	392	31	10	3	54	1.50
5258644--5258702	18	3.2	18	73	17	66	30	6	1	61	1.32
5258745--5259062	163	2.0	155	87	6	458	34	5	5	54	1.49
5271022--5271077	29	1.9	29	85	7	78	39	1	3	55	1.28
5271196--5271225	15	1.9	16	93	6	53	16	13	3	66	1.37
5273831--5273874	23	1.9	23	90	9	72	43	0	0	56	0.99
5274687--5274746	11	4.9	12	69	18	52	33	0	3	63	1.11
5274732--5274772	18	2.3	18	86	0	55	34	2	0	63	1.08
5274877--5274932	18	3.2	17	73	14	53	42	3	7	46	1.48
5274852--5274958	34	3.3	33	77	10	105	44	2	5	46	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5281246--5281455	106	2.0	104	85	7	282	29	15	14	40	1.86
5286967--5287058	46	2.0	46	100	0	184	23	17	28	30	1.97
5298152--5298226	39	1.9	39	83	0	96	40	6	4	49	1.48
5301232--5301295	25	2.6	25	80	12	69	50	1	1	46	1.20
5301749--5301802	12	4.4	12	74	4	54	50	1	0	48	1.11
5302375--5302422	25	1.9	25	83	8	62	41	10	4	43	1.58
5312655--5312687	2	17.0	2	93	6	59	51	0	0	48	1.00
5316679--5316710	17	1.9	17	93	6	57	37	9	12	40	1.75
5316712--5316736	2	12.5	2	100	0	50	52	0	0	48	1.00
5323748--5323952	105	2.0	105	86	1	286	35	6	12	45	1.68
5333862--5333886	13	1.9	13	100	0	50	68	0	0	32	0.90
5338296--5338329	11	3.1	11	91	8	52	35	2	0	61	1.11
5340058--5340102	15	3.1	15	78	15	58	57	0	0	42	0.98
5343288--5343312	13	1.9	13	100	0	50	48	0	0	52	1.00
5343519--5343573	23	2.5	22	81	18	62	52	5	1	40	1.35
5349216--5349249	15	2.3	15	89	0	50	35	2	0	61	1.11
5349277--5349305	14	2.0	15	93	6	51	20	3	6	68	1.27
5359702--5359749	23	2.1	23	92	0	78	60	10	6	22	1.52
5363125--5363182	23	2.5	22	81	10	62	36	0	5	58	1.20
5367295--5367448	79	1.9	79	85	0	209	39	18	16	25	1.91
5370770--5370807	18	2.3	18	86	13	55	60	5	31	2	1.33
5374605--5374629	9	2.8	9	100	0	50	20	0	8	72	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5374630--5374689	11	5.2	11	74	9	57	43	3	0	53	1.17
5375169--5375221	28	1.9	27	84	3	70	52	1	1	43	1.23
5375207--5375231	13	1.9	13	100	0	50	68	0	0	32	0.90
5375703--5375749	14	3.4	14	73	5	51	63	0	4	31	1.13
5376467--5376510	3	14.7	3	100	0	88	68	0	0	31	0.90
5376747--5376787	13	3.1	14	86	6	50	53	4	0	41	1.22
5377469--5377565	47	2.0	48	98	2	187	36	13	10	40	1.79
5378407--5378431	13	1.9	13	100	0	50	44	8	16	32	1.76
5378839--5378945	56	1.9	56	82	3	135	29	13	20	36	1.90
5378975--5379022	18	2.6	19	80	3	53	14	10	27	47	1.76
5379276--5379511	83	2.8	83	81	3	229	25	11	19	43	1.85
5383930--5383962	10	3.4	10	87	4	50	21	0	0	78	0.75
5384345--5384407	28	2.2	28	91	0	99	52	4	15	26	1.63
5387089--5387132	17	2.6	17	88	0	61	31	4	2	61	1.28
5387100--5387132	11	2.8	12	90	9	59	33	6	0	60	1.21
5388120--5388187	10	6.6	10	79	5	73	16	2	1	79	0.93
5388112--5388194	6	13.7	6	72	20	66	15	4	1	78	0.98
5388118--5388194	31	2.5	31	85	10	95	15	5	1	77	1.00
5388221--5388616	57	6.7	57	87	9	485	46	6	12	34	1.67
5388220--5388616	119	3.3	116	87	7	577	46	6	12	34	1.67
5388218--5388616	180	2.2	177	87	6	590	46	6	12	34	1.68
5388653--5388681	6	4.8	6	100	0	58	17	0	13	68	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5392510--5392552	14	3.2	13	83	12	52	83	0	11	4	0.78
5392522--5392560	11	3.6	11	86	6	62	89	0	10	0	0.48
5392522--5392559	14	2.8	13	88	11	58	89	0	10	0	0.49
5392522--5392568	11	4.4	11	86	10	53	85	0	12	2	0.70
5392500--5392576	15	5.0	15	78	18	63	77	0	14	7	0.97
5393763--5394097	41	8.1	41	92	2	539	23	16	24	35	1.95
5394104--5394215	1	112.0	1	74	0	98	87	10	0	0	0.64
5394107--5394213	8	12.9	8	83	14	112	86	11	0	0	0.66
5394104--5394212	17	5.9	18	83	12	125	87	11	0	0	0.65
5394379--5394526	16	9.1	16	67	21	60	29	2	5	63	1.28
5394473--5394520	11	4.7	11	80	14	50	29	2	6	62	1.31
5394484--5394526	14	3.1	14	83	9	52	32	4	2	60	1.30
5394483--5394526	20	2.2	20	87	0	61	31	4	2	61	1.28
5395536--5395603	10	6.6	10	79	5	73	16	2	1	79	0.93
5395528--5395610	6	13.7	6	72	20	66	15	4	1	78	0.98
5395534--5395610	31	2.5	31	85	10	95	15	5	1	77	1.00
5395635--5396089	118	3.8	116	86	8	609	47	6	12	34	1.67
5395636--5396089	57	7.7	58	84	9	589	46	6	12	34	1.67
5395712--5396056	181	1.9	182	92	3	588	48	7	10	33	1.66
5396126--5396154	6	4.8	6	100	0	58	17	0	13	68	1.20
5397305--5397719	211	2.0	211	83	2	521	41	9	20	28	1.84
5397713--5397816	55	1.9	55	88	4	156	39	4	29	25	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5400373--5400397	2	12.5	2	100	0	50	52	0	0	48	1.00
5401989--5402013	9	2.8	9	100	0	50	48	0	0	52	1.00
5404370--5404435	15	4.3	15	75	11	62	51	3	0	45	1.16
5404370--5404404	15	2.2	16	95	5	63	48	2	0	48	1.16
5404382--5404452	28	2.4	30	86	9	101	53	1	0	45	1.09
5405048--5405192	52	2.8	52	82	8	170	44	9	21	24	1.82
5406078--5406119	11	3.8	11	87	0	66	23	0	26	50	1.50
5406077--5406119	22	2.0	22	95	0	77	25	0	25	48	1.51
5410464--5410500	14	2.8	13	84	8	56	54	2	0	43	1.14
5414208--5414240	12	2.7	13	86	13	52	60	0	0	39	0.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121