genome.fa.s79.2.7.7.80.10.50.1000.59.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167904.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_17, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  21107920

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   

This is table  59  of  121  ( 14423 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10110418--10110470	26	2.0	26	88	0	79	24	24	18	32	1.97
10112204--10112279	26	2.9	26	98	0	143	22	28	19	28	1.98
10115093--10116592	711	2.1	715	88	3	2212	27	24	22	25	2.00
10115820--10118179	902	2.6	895	87	2	3342	26	24	23	26	2.00
10117600--10117651	26	2.0	25	88	3	77	28	25	15	30	1.96
10119279--10119331	26	2.0	26	85	7	72	30	24	15	30	1.95
10121075--10121127	26	2.0	26	96	0	97	28	26	18	26	1.98
10118397--10121863	892	3.9	891	86	4	4575	26	24	23	25	2.00
10121101--10122491	705	2.0	707	90	0	2187	27	23	23	25	2.00
10122652--10124051	703	2.0	704	86	4	1933	26	24	24	25	2.00
10126622--10126903	58	4.7	59	85	9	356	32	13	7	45	1.73
10126622--10126920	122	2.5	119	89	4	433	32	13	8	46	1.72
10126937--10127003	11	6.6	10	76	13	66	80	1	2	14	0.90
10126940--10126999	18	3.4	18	86	2	86	81	1	3	13	0.89
10126944--10127011	17	3.9	16	78	17	66	80	1	4	13	0.92
10128028--10128078	15	3.4	16	79	10	56	58	5	0	35	1.22
10128083--10128144	28	2.2	27	78	13	63	69	4	1	24	1.17
10128343--10128407	10	6.2	10	84	10	85	1	0	13	84	0.69
10128350--10128407	11	5.4	11	88	12	61	0	0	15	84	0.62
10128343--10128404	31	2.0	32	90	3	99	1	0	14	83	0.71
10128415--10128668	41	6.1	41	89	3	377	34	22	18	24	1.96
10129682--10129758	16	4.8	16	73	10	68	12	6	1	79	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10129670--10129762	42	2.2	44	80	7	111	16	9	1	73	1.15
10137885--10137944	30	2.0	30	100	0	120	23	26	10	40	1.86
10139105--10139404	62	4.9	62	85	5	423	31	14	8	45	1.74
10139105--10139404	122	2.5	122	94	0	512	31	14	8	45	1.74
10139424--10139496	6	12.3	6	73	13	62	80	1	4	13	0.92
10139428--10139575	18	7.9	18	69	16	81	75	3	4	16	1.09
10139421--10139510	23	4.0	22	72	16	67	77	1	4	16	0.98
10139424--10139575	27	5.4	27	67	20	80	75	3	3	17	1.09
10139427--10139488	10	6.2	10	76	12	65	82	1	3	12	0.87
10139421--10139495	14	4.8	16	71	15	59	80	1	4	14	0.93
10139428--10139578	8	17.5	8	67	22	58	76	3	3	16	1.08
10139895--10139933	20	2.0	20	94	0	69	12	20	28	38	1.89
10139940--10139988	11	4.5	11	86	0	71	28	18	30	22	1.97
10139934--10139980	22	2.1	22	92	0	76	23	17	27	31	1.96
10140559--10140895	159	2.1	159	87	1	469	21	29	27	20	1.98
10141776--10141828	26	2.0	26	88	0	79	28	22	18	30	1.98
10140705--10142913	902	2.5	893	87	2	3093	24	25	25	24	2.00
10142669--10142721	27	2.0	27	100	0	106	28	26	18	26	1.98
10144306--10144358	26	2.0	26	96	0	97	26	24	22	26	2.00
10142920--10148823	899	6.6	900	81	6	6525	25	25	24	25	2.00
10145034--10145387	158	2.2	157	83	2	438	21	25	28	23	1.99
10145361--10145413	26	2.0	26	89	7	81	32	26	15	26	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10146103--10146156	27	2.0	26	89	3	81	27	25	16	29	1.97
10148464--10149229	406	1.9	403	83	2	1000	22	27	26	23	1.99
10149203--10149253	26	2.0	26	100	0	102	25	27	19	27	1.99
10149898--10149949	26	2.0	26	96	0	95	28	25	19	26	1.98
10151833--10151883	26	2.0	26	96	0	93	27	27	17	27	1.98
10152526--10152577	26	2.0	26	92	0	86	26	25	21	26	1.99
10152712--10152768	26	2.3	25	90	6	89	29	17	17	35	1.93
10152451--10152783	185	1.8	185	82	2	436	22	26	25	25	2.00
10153603--10153655	26	2.0	26	88	0	79	26	18	22	32	1.97
10154309--10154360	26	2.0	26	88	0	77	28	21	19	30	1.97
10154226--10154566	185	1.8	185	84	2	470	21	26	26	24	2.00
10151148--10160468	890	10.4	889	82	5	9527	26	24	23	25	2.00
10155380--10155432	26	2.0	26	88	0	79	26	20	22	30	1.98
10156290--10156342	26	2.0	26	100	0	106	26	26	20	26	1.99
10157184--10157236	26	2.0	26	96	0	97	26	28	20	24	1.99
10158085--10158137	26	2.0	26	96	0	97	26	24	22	26	2.00
10158956--10159008	26	2.0	26	96	0	97	28	26	18	26	1.98
10159855--10159907	26	2.0	26	92	0	88	28	26	20	24	1.99
10154334--10160652	898	7.1	897	85	3	7198	25	24	24	25	2.00
10159881--10161352	717	2.1	708	89	2	2234	26	23	23	26	2.00
10162573--10162625	26	2.0	26	96	0	97	28	26	18	26	1.98
10164653--10164705	26	2.0	26	92	0	88	26	22	20	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10166173--10167665	704	2.1	708	92	1	2444	26	23	23	25	2.00
10168653--10168704	26	2.0	26	100	0	104	26	26	19	26	1.99
10169554--10169605	26	2.0	26	96	0	95	32	23	17	26	1.96
10167777--10179241	900	12.8	898	85	4	14463	25	24	23	25	2.00
10170459--10170511	26	2.0	26	88	0	79	28	22	18	30	1.98
10171366--10171437	26	2.8	26	91	0	108	26	23	19	30	1.98
10172287--10172340	26	2.1	26	96	0	99	24	24	24	27	2.00
10173206--10179241	897	6.8	895	86	4	7744	26	24	23	25	2.00
10174972--10175024	26	2.0	26	100	0	106	26	22	20	30	1.98
10175878--10175930	26	2.0	26	88	0	79	30	24	16	28	1.97
10176764--10176816	26	2.0	26	96	0	97	26	26	18	28	1.98
10177639--10177691	26	2.0	26	100	0	106	26	26	20	26	1.99
10180251--10180303	26	2.0	26	96	0	97	26	24	20	28	1.99
10181114--10181166	26	2.0	26	92	0	88	28	24	18	28	1.98
10181820--10182213	158	2.5	159	84	0	484	20	26	30	22	1.98
10185424--10185476	26	2.0	26	92	0	88	32	24	15	28	1.95
10187057--10187109	26	2.0	26	92	0	88	28	24	18	28	1.98
10189255--10189307	26	2.0	26	92	0	88	26	22	20	30	1.98
10188378--10190949	903	2.9	896	85	3	3450	26	23	23	25	2.00
10190179--10191647	716	2.1	718	88	2	2168	26	23	23	26	2.00
10191771--10191823	26	2.0	26	96	0	97	26	20	22	30	1.98
10194932--10194984	26	2.0	26	96	0	97	28	26	18	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10197454--10199804	869	2.7	845	83	7	2955	27	23	23	25	2.00
10199268--10200335	531	2.0	531	90	1	1678	29	21	21	27	1.99
10202450--10202478	6	4.8	6	100	0	58	68	13	0	17	1.20
10202513--10202734	58	3.7	58	88	7	347	34	13	7	45	1.70
10202513--10202734	61	3.7	59	88	7	322	34	13	7	45	1.70
10202513--10202734	121	1.9	118	93	2	381	34	13	7	45	1.70
10202748--10202789	22	1.9	22	85	9	59	71	2	11	14	1.24
10202771--10202817	17	2.8	16	81	12	51	78	2	6	12	1.02
10202762--10202834	21	3.3	22	67	27	55	73	1	9	15	1.14
10203743--10203797	27	2.0	27	85	7	74	65	3	9	21	1.37
10203712--10203813	32	3.2	31	75	18	95	66	2	7	22	1.31
10203803--10203843	18	2.2	18	87	12	57	75	2	0	21	0.92
10203824--10203877	3	19.7	3	75	17	55	66	0	0	33	0.92
10203806--10203897	11	8.3	12	71	18	58	68	2	0	29	1.01
10203925--10203990	4	17.5	4	75	9	50	66	3	1	28	1.15
10203961--10204002	14	2.9	15	80	19	54	69	4	0	26	1.08
10204142--10204266	41	3.0	41	94	1	214	36	24	16	22	1.94
10205509--10205548	8	5.0	8	85	8	55	0	12	0	87	0.54
10205509--10205548	16	2.6	16	92	4	64	0	12	0	87	0.54
10205509--10205545	9	4.3	9	89	3	51	0	13	0	86	0.57
10205864--10205897	11	3.2	10	88	12	50	2	11	0	85	0.71
10209518--10209559	22	1.9	22	85	9	59	71	2	11	14	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10209541--10209591	17	3.0	17	81	16	61	80	1	3	13	0.94
10209557--10209597	21	1.9	22	90	5	66	80	2	4	12	0.97
10210501--10210555	28	1.9	28	82	10	67	63	3	10	21	1.42
10210503--10210586	32	2.6	32	78	16	93	64	3	8	23	1.37
10210576--10210771	4	51.2	4	73	15	75	67	3	1	28	1.14
10210597--10210653	3	19.7	3	79	16	59	68	0	0	31	0.90
10210583--10210673	34	2.6	34	83	11	114	68	2	0	29	1.02
10210776--10210802	14	1.9	14	100	0	54	88	0	11	0	0.50
10210839--10210879	20	2.0	21	86	13	59	21	19	29	29	1.98
10211951--10212003	26	2.0	26	100	0	106	26	26	20	26	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121