genome.fa.s79.2.7.7.80.10.50.1000.45.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167904.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_17, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  21107920

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   

This is table  45  of  121  ( 14423 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7932381--7932454	18	3.9	18	72	19	62	75	1	6	16	1.08
7932376--7932463	45	2.0	45	84	8	117	73	1	9	15	1.13
7932837--7932875	19	2.1	19	90	0	60	30	20	23	25	1.98
7933311--7933343	9	3.9	9	84	15	52	87	0	0	12	0.53
7933312--7933343	16	2.0	16	100	0	64	87	0	0	12	0.54
7933390--7933438	22	2.3	22	86	10	66	63	2	6	28	1.30
7933491--7933525	10	3.4	10	88	7	52	82	0	17	0	0.66
7933532--7933649	7	17.3	7	73	17	58	66	0	4	27	1.15
7933556--7933590	15	2.5	15	90	9	56	68	0	5	25	1.11
7933521--7933650	60	2.4	52	77	19	133	67	0	4	26	1.15
7933532--7933650	28	4.7	24	71	20	73	67	0	4	27	1.15
7933927--7933976	21	2.4	22	74	16	52	46	0	4	50	1.20
7935102--7935144	19	2.4	17	80	7	50	41	4	2	51	1.35
7935802--7935834	13	2.5	13	90	9	50	78	15	0	6	0.93
7937966--7938013	17	2.7	17	80	6	51	39	6	2	52	1.39
7943636--7943950	159	2.0	157	97	1	594	39	16	13	29	1.87
7944995--7945023	3	9.7	3	100	0	58	68	0	0	31	0.89
7945310--7945376	1	67.0	1	75	0	53	2	0	10	86	0.67
7945296--7945327	13	2.5	13	94	0	55	12	0	6	81	0.87
7945310--7945376	9	8.2	8	85	11	84	2	0	10	86	0.67
7945310--7945376	16	4.1	16	81	14	84	2	0	10	86	0.67
7945303--7945377	23	3.3	23	85	12	93	4	0	12	84	0.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7945303--7945377	33	2.4	32	88	6	109	4	0	12	84	0.76
7945387--7946306	41	22.4	41	88	8	1240	37	22	17	22	1.94
7945387--7946306	122	7.5	121	87	10	1168	37	22	17	22	1.94
7945387--7946306	83	11.2	80	87	9	1231	37	22	17	22	1.94
7947560--7947594	9	3.8	9	88	7	52	2	14	0	82	0.77
7947552--7947619	18	3.7	18	75	16	77	7	17	0	75	1.03
7947541--7947592	8	6.1	8	74	12	50	5	15	0	78	0.92
7947993--7948019	1	27.0	1	100	0	54	0	0	0	100	0.00
7951297--7951604	158	2.0	155	94	3	546	39	16	13	30	1.87
7951591--7951663	32	2.3	32	88	4	103	80	6	1	10	0.95
7951625--7951651	10	2.7	10	100	0	54	77	7	0	14	0.97
7951591--7951663	31	2.3	32	85	4	103	80	6	1	10	0.95
7952044--7952071	11	2.5	11	100	0	56	17	21	46	14	1.84
7952112--7952184	31	2.4	31	90	4	112	27	24	26	21	2.00
7952496--7952527	11	2.8	12	86	13	50	81	0	0	18	0.70
7952827--7952885	20	3.0	20	94	0	100	22	28	30	18	1.97
7957667--7957692	5	5.2	5	100	0	52	80	0	0	19	0.71
7961137--7961166	5	5.8	5	92	7	51	83	0	0	16	0.65
7961121--7961166	21	2.2	21	88	0	65	76	0	4	19	0.96
7961135--7961166	10	3.0	11	90	9	57	81	0	0	18	0.70
7961100--7961166	16	4.1	16	75	11	57	74	1	4	19	1.07
7961991--7962015	13	1.9	13	100	0	50	72	0	4	24	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7962016--7962157	3	48.0	3	68	19	50	57	2	4	35	1.32
7962016--7962155	11	13.9	10	69	22	66	57	2	5	35	1.32
7962018--7962157	17	8.7	17	72	17	63	57	2	5	35	1.33
7962016--7962157	20	7.3	18	74	16	83	57	2	4	35	1.32
7963165--7963395	122	1.9	122	88	4	349	36	7	6	49	1.55
7964606--7964644	3	13.0	3	100	0	78	66	0	0	33	0.92
7964963--7965060	42	2.3	43	82	5	119	36	12	15	35	1.85
7965019--7965172	49	3.1	50	81	2	175	38	16	13	31	1.88
7965050--7965172	51	2.5	49	85	2	165	38	17	12	32	1.86
7972544--7972576	9	3.8	9	92	8	59	75	0	0	24	0.80
7972544--7972576	17	1.9	17	100	0	66	75	0	0	24	0.80
7973857--7973886	3	10.0	3	100	0	60	66	0	0	33	0.92
7974233--7974293	23	2.7	21	77	10	59	47	34	0	18	1.49
7974279--7974348	14	4.8	15	76	11	65	47	35	0	17	1.48
7974274--7974348	29	2.6	28	87	4	96	49	33	0	17	1.47
7974296--7974418	14	8.7	14	71	14	74	52	29	0	18	1.46
7974295--7974489	71	2.7	71	79	6	182	49	30	1	18	1.57
7974339--7974411	28	2.6	28	84	4	85	53	28	0	17	1.44
7974329--7974418	42	2.1	42	82	8	103	53	28	0	17	1.44
7974366--7974445	28	2.8	28	80	1	79	51	30	1	17	1.53
7974743--7974781	16	2.5	16	91	4	62	56	2	10	30	1.46
7975695--7975745	26	2.0	26	84	0	66	29	1	3	64	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7982583--7982696	41	2.8	39	76	7	111	28	19	17	35	1.94
7983002--7983105	41	2.5	41	87	3	147	37	16	15	30	1.90
7983235--7983288	22	2.5	22	87	6	74	37	29	7	25	1.83
7983466--7983513	21	2.2	21	88	3	69	27	14	14	43	1.84
7983573--7983676	22	4.7	22	74	11	88	25	20	17	36	1.94
7983462--7983784	176	1.8	175	86	5	474	23	18	17	40	1.91
7983755--7983820	22	3.0	22	77	4	62	28	19	16	34	1.94
7984019--7984105	22	4.0	22	86	5	104	33	20	12	33	1.90
7983624--7984084	132	3.5	132	81	5	538	23	18	17	40	1.91
7983921--7984216	154	1.9	154	84	0	394	25	17	16	40	1.91
7984059--7984306	110	2.3	110	78	1	282	23	19	16	40	1.90
7984580--7984637	18	2.8	21	75	20	59	63	0	3	32	1.11
7984580--7984634	3	19.0	3	75	14	53	63	0	3	32	1.12
7984595--7984640	21	2.1	21	88	8	65	65	0	2	32	1.05
7984724--7984761	12	3.2	12	81	3	51	21	44	10	23	1.83
7986041--7986070	3	10.0	3	100	0	60	66	0	0	33	0.92
7986234--7986276	12	3.6	12	80	0	50	60	0	0	39	0.97
7986400--7986696	14	20.9	14	68	14	101	49	32	1	17	1.53
7986442--7986520	29	2.7	30	78	5	83	49	35	0	15	1.45
7986413--7986630	86	2.5	85	76	9	210	48	32	1	17	1.56
7986565--7986708	72	2.0	70	88	5	209	54	30	0	14	1.46
7986629--7986715	28	3.1	28	85	3	104	55	32	0	12	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7986565--7986780	71	3.0	70	81	7	224	51	31	1	14	1.53
7991624--7991672	20	2.3	20	79	10	53	46	0	14	38	1.44
7995008--7995049	22	2.0	21	85	4	57	38	7	21	33	1.81
7997764--7997805	21	2.0	21	85	0	57	42	4	35	16	1.69
7998453--7998681	122	1.9	122	86	3	327	49	6	6	36	1.57
8004314--8004541	122	1.9	122	84	2	307	50	7	7	35	1.58
8015691--8015883	49	3.9	50	75	8	137	29	10	17	43	1.82
8015993--8016145	49	3.1	50	80	3	184	30	14	16	37	1.89
8016104--8016202	43	2.3	43	85	1	128	34	15	13	37	1.86
8016521--8016568	3	16.0	3	100	0	96	33	0	0	66	0.92
8016761--8016803	18	2.4	17	85	11	59	72	11	4	11	1.27
8016841--8016888	25	1.9	25	82	0	60	79	12	4	4	1.02
8017910--8018051	3	48.0	3	67	19	50	35	4	2	57	1.32
8017910--8018047	11	12.0	11	70	19	70	35	5	2	57	1.33
8017932--8017980	20	2.6	19	87	6	64	36	6	0	57	1.24
8018052--8018076	13	1.9	13	100	0	50	24	4	0	72	1.02
8018385--8018442	20	2.8	20	71	2	53	13	1	32	51	1.51
8018890--8018946	12	4.2	13	82	11	53	10	5	0	84	0.77
8018910--8018956	5	9.8	5	90	4	71	17	0	0	82	0.66
8018897--8018958	6	11.0	6	88	10	62	14	3	0	82	0.80
8022405--8022430	5	5.2	5	100	0	52	19	0	0	80	0.71
8030330--8030699	114	3.2	114	78	3	377	25	22	15	36	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8030390--8030752	114	3.2	114	79	1	386	25	23	14	37	1.92
8030390--8030827	114	3.8	114	76	5	267	25	22	15	36	1.93
8030330--8030842	228	2.2	228	77	6	518	25	22	15	36	1.93
8031149--8031243	3	33.3	3	72	10	58	22	4	1	72	1.08
8031176--8031251	13	6.0	13	80	9	77	15	5	0	78	0.91
8031170--8031246	25	3.1	24	83	9	84	18	3	0	77	0.91
8031170--8031251	6	13.2	6	87	7	92	17	4	0	78	0.93
8032054--8032099	19	2.5	18	92	3	74	13	2	4	80	0.95
8034191--8034215	2	12.5	2	100	0	50	48	0	0	52	1.00
8035109--8035160	22	2.4	22	80	9	70	63	1	0	34	1.06

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121