genome.fa.s79.2.7.7.80.10.50.1000.83.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167904.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_17, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  21107920

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   

This is table  83  of  121  ( 14423 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14138267--14138305	21	1.9	21	89	5	62	7	28	7	56	1.55
14143585--14143616	15	2.1	15	100	0	64	21	21	12	43	1.86
14145086--14145124	14	2.7	14	84	4	51	58	0	0	41	0.98
14153300--14153328	14	2.0	15	93	6	51	34	27	3	34	1.74
14155419--14155477	28	2.1	28	87	0	82	28	27	13	30	1.94
14155569--14155611	23	1.9	23	85	4	61	18	9	11	60	1.57
14156314--14156518	8	25.9	8	64	16	61	50	26	0	22	1.55
14156313--14156518	15	13.5	17	69	19	91	50	26	0	22	1.56
14156378--14156429	24	2.2	23	89	3	77	55	26	0	17	1.42
14156403--14156491	31	2.9	31	89	0	133	51	28	0	20	1.47
14156660--14156699	16	2.4	16	83	4	53	47	25	5	22	1.71
14159043--14159088	20	2.3	20	88	0	65	82	6	8	2	0.91
14159056--14159102	17	2.7	17	90	3	67	80	6	10	2	0.96
14159324--14159506	22	8.1	23	75	3	113	30	22	17	29	1.97
14159396--14159517	23	5.4	22	75	7	84	30	20	17	31	1.95
14159587--14159629	23	1.9	23	90	4	70	25	9	25	39	1.85
14159587--14159640	23	2.4	23	84	9	67	22	11	24	42	1.85
14160265--14160403	35	4.0	34	75	15	108	15	17	15	51	1.77
14160450--14160687	35	6.9	35	68	7	137	21	20	10	47	1.80
14160471--14160719	136	1.8	135	82	6	322	20	20	12	46	1.82
14161065--14161105	21	2.0	21	90	0	64	63	19	4	12	1.46
14161294--14161344	20	2.5	20	90	0	84	33	7	11	47	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14163748--14163849	8	12.6	8	71	6	53	47	31	4	16	1.68
14167335--14167365	16	1.9	16	93	0	53	35	0	6	58	1.24
14168243--14168311	16	4.6	15	72	24	56	63	0	0	36	0.94
14168239--14168307	28	2.4	29	81	11	90	66	0	0	33	0.92
14168239--14168308	19	3.7	19	73	16	65	65	0	0	34	0.93
14168501--14168550	21	2.4	21	83	6	57	52	0	0	48	1.00
14168543--14168591	14	3.6	14	81	10	50	32	0	2	65	1.04
14169119--14169150	16	2.1	16	88	11	50	46	0	0	53	1.00
14169117--14169178	32	2.0	30	81	6	70	43	0	1	54	1.09
14170646--14170688	23	1.9	23	90	4	70	53	16	2	27	1.55
14170818--14170848	16	1.9	16	100	0	62	45	19	0	35	1.51
14172267--14172309	22	1.9	23	85	4	61	48	6	0	44	1.29
14173532--14174602	73	14.8	73	85	3	1152	43	12	22	21	1.86
14174360--14174472	37	3.1	37	67	5	104	43	10	23	23	1.84
14173532--14174584	35	29.1	35	69	13	321	43	12	22	22	1.86
14175626--14175731	27	3.6	27	73	22	81	11	4	0	83	0.85
14175636--14175702	16	4.4	16	73	17	63	13	4	0	82	0.82
14175633--14175731	34	3.3	29	78	19	96	12	3	1	83	0.80
14175633--14175731	1	99.0	1	69	0	54	12	3	1	83	0.80
14177812--14177857	21	2.2	21	88	0	65	21	21	13	43	1.86
14187400--14187440	14	2.9	15	80	20	52	29	2	0	68	1.03
14187439--14187481	22	1.9	23	85	4	61	48	6	0	44	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14187950--14187996	23	2.0	24	83	4	60	4	42	27	25	1.73
14188519--14188543	10	2.5	10	100	0	50	8	0	8	84	0.79
14188532--14188626	7	13.6	7	72	18	65	17	1	9	71	1.18
14188521--14188570	8	6.2	8	86	9	59	14	0	12	74	1.09
14188532--14188626	15	6.8	14	76	15	65	17	1	9	71	1.18
14188522--14188615	39	2.4	41	84	8	115	17	1	10	71	1.20
14190874--14191175	128	2.4	128	79	9	318	41	8	4	45	1.56
14191171--14191222	14	3.5	14	78	14	52	57	5	0	36	1.23
14199854--14199950	39	2.5	40	83	5	117	49	9	18	22	1.76
14200116--14200173	31	1.9	30	85	3	80	32	5	1	60	1.29
14200239--14200298	22	2.6	22	77	15	68	45	0	0	55	0.99
14200729--14200787	29	2.0	30	86	3	84	52	0	13	33	1.41
14212396--14212432	19	1.9	19	88	0	56	29	13	8	48	1.71
14213220--14213280	28	2.2	28	81	0	68	49	3	1	45	1.28
14213259--14213310	19	2.8	18	82	5	59	69	3	1	25	1.16
14213407--14213442	17	2.1	18	94	5	65	66	5	2	25	1.27
14220065--14220109	21	2.1	21	91	0	72	33	13	46	6	1.69
14220255--14220307	2	27.0	2	82	3	54	47	1	5	45	1.37
14221226--14221261	18	2.0	18	89	10	56	61	2	0	36	1.11
14228790--14228831	15	2.7	15	85	7	57	26	9	4	59	1.48
14228921--14228985	10	6.2	10	72	15	51	29	3	1	66	1.16
14228893--14229062	24	7.2	25	68	22	93	26	4	3	65	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14228975--14229057	23	3.8	20	74	13	67	22	6	2	68	1.23
14228971--14229021	21	2.5	20	81	9	68	21	3	3	70	1.20
14228959--14229067	45	2.4	44	82	11	125	22	5	3	68	1.26
14229326--14229370	12	3.9	12	80	11	58	26	0	20	53	1.46
14229346--14229370	10	2.5	10	100	0	50	24	0	16	60	1.36
14229936--14230040	6	17.7	6	73	14	76	16	4	1	77	1.03
14229923--14229995	17	4.5	17	77	9	64	17	4	1	76	1.01
14229937--14230040	23	4.4	23	75	14	88	16	4	1	76	1.04
14230054--14230552	57	8.7	57	82	6	553	43	6	13	36	1.70
14230063--14230552	114	4.3	114	89	3	648	42	6	13	37	1.70
14240958--14241029	8	8.9	8	93	4	110	86	0	4	9	0.70
14240960--14241028	23	2.9	23	89	8	79	85	0	4	10	0.72
14240955--14241031	9	8.3	9	79	16	61	84	0	6	9	0.78
14240976--14241030	1	55.0	1	77	0	56	89	0	1	9	0.57
14242082--14242241	84	1.9	84	84	5	216	25	16	20	38	1.92
14242039--14242253	41	5.1	41	86	3	241	24	16	22	36	1.94
14242266--14242312	12	4.1	11	82	15	51	87	4	0	8	0.67
14242267--14242319	24	2.2	24	83	12	65	84	3	1	9	0.81
14242265--14242321	18	3.0	18	80	16	62	84	3	1	10	0.82
14242325--14242514	43	4.4	43	85	2	247	22	15	23	39	1.91
14242338--14242504	85	1.9	88	87	3	250	22	14	22	40	1.90
14242695--14242757	7	8.9	7	83	10	74	23	1	1	73	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14242686--14242758	12	5.8	12	77	16	60	21	2	1	73	1.03
14242686--14242764	14	5.6	14	77	15	65	20	3	1	74	1.04
14242692--14242786	43	2.2	44	83	5	113	21	3	3	72	1.12
14242716--14242800	15	5.7	14	77	16	59	22	2	2	72	1.07
14242838--14242875	15	2.5	15	95	0	67	0	15	0	84	0.63
14242914--14242973	10	5.8	10	72	14	50	28	3	1	66	1.17
14242881--14242999	21	5.0	25	70	18	78	27	5	3	63	1.31
14242947--14243021	21	3.4	21	79	7	78	22	6	2	68	1.26
14242947--14243041	22	4.3	22	75	12	72	20	7	3	69	1.26
14243570--14243610	21	1.9	22	90	5	66	56	0	43	0	0.99
14243860--14244038	17	10.6	16	68	15	92	16	3	3	75	1.10
14243859--14244038	6	29.7	6	66	20	63	16	3	3	75	1.10
14243934--14244001	23	3.2	20	82	12	75	13	4	1	80	0.92
14243984--14244039	29	1.9	30	89	7	89	14	5	3	76	1.09
14243953--14244038	37	2.4	37	82	5	104	13	3	3	79	1.00
14244057--14244500	57	7.7	57	84	6	538	45	6	11	36	1.65
14244075--14244502	115	3.7	114	87	5	598	45	6	11	36	1.67
14246434--14246484	24	2.1	24	100	0	102	41	17	11	29	1.85
14256354--14256383	16	1.9	16	93	6	53	83	0	3	13	0.77
14256781--14256830	9	5.3	9	77	17	57	78	0	10	12	0.98
14256781--14256848	17	3.8	17	73	19	57	75	0	13	11	1.06
14256778--14256830	18	2.8	20	77	11	65	79	0	9	11	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14257908--14258000	33	2.8	33	80	7	127	22	21	7	48	1.75
14258002--14258034	16	2.0	17	88	5	50	15	15	9	60	1.58
14257926--14258136	114	1.8	116	79	6	250	19	21	10	48	1.79
14258105--14258166	32	1.9	32	83	0	79	8	24	14	53	1.68
14258292--14258496	34	6.1	34	79	4	193	25	16	11	45	1.81
14258292--14258496	67	3.1	66	84	2	232	25	16	11	45	1.81
14259970--14260016	18	2.5	19	82	6	51	19	0	2	78	0.85
14259989--14260104	4	30.0	4	71	11	73	18	0	7	73	1.12
14260023--14260106	16	5.4	16	80	11	93	17	1	7	73	1.12
14259989--14260104	35	3.4	34	80	10	119	18	0	7	73	1.12

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121