genome.fa.s79.2.7.7.80.10.50.1000.110.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167904.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_17, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  21107920

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   

This is table  110  of  121  ( 14423 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18727250--18727306	30	1.9	30	85	0	78	52	1	0	45	1.11
18728047--18728129	24	3.3	24	68	14	69	46	2	3	46	1.33
18728042--18728131	28	3.4	28	66	18	75	47	2	3	46	1.31
18728040--18728108	24	3.0	22	77	12	68	49	1	4	44	1.31
18728043--18728161	51	2.3	52	91	2	186	47	3	5	43	1.41
18729150--18729189	15	2.6	16	92	8	73	15	0	10	75	1.05
18729124--18729189	29	2.2	31	82	15	77	16	1	10	71	1.21
18741117--18741165	26	2.0	26	84	8	66	22	2	6	69	1.21
18741973--18742020	19	2.5	19	89	0	69	68	2	0	29	1.01
18741963--18742020	19	2.9	21	75	15	68	68	1	0	29	0.99
18742544--18742581	20	2.0	20	90	10	62	63	0	0	36	0.95
18747562--18747600	19	2.0	20	90	5	62	69	12	2	15	1.30
18753152--18753186	18	2.1	17	89	10	54	60	14	0	25	1.35
18754284--18754317	5	6.8	5	100	0	68	58	0	0	41	0.98
18754378--18754411	17	2.0	17	88	11	52	41	0	0	58	0.98
18755821--18756210	59	6.7	58	82	5	482	34	12	6	46	1.69
18755821--18756209	116	3.3	115	91	2	609	34	12	6	46	1.69
18756239--18756288	15	3.4	15	86	8	68	74	4	0	22	0.99
18756223--18756263	19	2.2	18	86	4	55	73	2	2	21	1.07
18756223--18756331	34	3.2	32	80	12	114	72	2	1	22	1.07
18756228--18756300	19	4.1	18	77	21	66	73	4	0	21	0.99
18756277--18756326	3	16.7	3	79	8	57	70	2	2	26	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18756228--18756329	6	16.7	6	72	18	52	72	2	0	23	1.04
18757169--18757248	41	2.0	40	83	14	101	63	5	6	25	1.38
18757233--18757381	14	10.9	13	70	20	85	63	1	3	32	1.19
18757233--18757381	18	8.7	18	71	16	86	63	1	3	32	1.19
18757224--18757374	4	38.0	4	70	18	52	63	0	3	32	1.15
18757222--18757376	40	3.8	42	77	15	155	63	0	3	32	1.17
18757406--18757466	17	3.5	17	80	12	61	78	1	1	18	0.91
18757409--18757456	24	2.0	25	91	4	80	75	2	2	20	1.02
18757409--18757454	13	3.7	13	80	11	51	76	2	2	19	1.00
18757406--18757467	18	3.4	17	76	22	54	79	1	1	17	0.90
18757416--18757472	17	3.2	16	77	18	51	77	3	1	17	1.00
18762794--18763116	59	5.6	58	81	8	338	36	13	4	44	1.65
18762794--18763116	117	2.8	116	85	7	415	36	13	4	44	1.65
18763148--18763211	9	7.3	9	73	18	55	73	1	0	25	0.92
18763142--18763212	14	5.0	14	69	25	51	73	1	1	23	1.00
18763149--18763215	35	1.9	35	87	6	100	73	1	0	25	0.92
18763482--18763517	14	2.4	14	90	9	54	0	41	0	58	0.98
18764133--18764207	22	3.5	22	73	14	84	60	2	4	33	1.30
18764133--18764264	8	17.0	8	71	19	84	62	1	3	32	1.19
18764184--18764269	31	2.8	30	76	15	79	63	1	3	31	1.18
18764128--18764260	4	32.0	4	66	18	58	63	1	3	32	1.19
18764132--18764250	10	11.6	10	72	16	75	63	1	3	31	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18764127--18764260	22	5.7	24	71	17	77	63	1	2	32	1.18
18764296--18764366	7	10.4	7	89	7	85	74	4	1	19	1.06
18764294--18764379	26	3.3	27	80	13	99	75	3	1	19	1.01
18764297--18764374	34	2.3	33	78	20	90	74	3	1	20	1.05
18764296--18764376	14	5.8	14	77	13	78	75	3	1	19	1.02
18764452--18764486	7	5.0	7	85	0	52	40	2	17	40	1.64
18765706--18765739	9	3.6	9	85	14	50	35	0	0	64	0.94
18769443--18769507	21	3.1	21	75	0	58	24	26	40	9	1.85
18770058--18770118	30	2.0	30	93	0	104	18	37	32	11	1.86
18770539--18770574	2	18.0	2	100	0	72	0	0	50	50	1.00
18775426--18775464	11	3.5	11	85	0	51	89	2	5	2	0.63
18776261--18776286	13	2.0	13	100	0	52	38	15	0	46	1.46
18778118--18778145	3	9.3	3	100	0	56	64	0	0	35	0.94
18785020--18785053	2	17.0	2	93	0	59	47	0	0	52	1.00
18785223--18785498	139	2.0	139	97	0	525	22	22	18	35	1.95
18788551--18788592	20	2.1	20	100	0	84	19	4	28	47	1.69
18796671--18796744	29	2.6	29	77	10	73	58	0	0	41	0.98
18796722--18796765	21	2.0	22	83	12	56	65	0	0	34	0.93
18798352--18798497	34	4.3	34	81	0	139	36	10	11	41	1.76
18798352--18798496	68	2.1	68	83	0	173	36	10	11	41	1.76
18798370--18798512	34	4.2	34	81	1	99	35	9	12	41	1.76
18798438--18798524	34	2.6	34	83	3	86	32	9	12	45	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18799785--18800043	140	1.9	140	80	3	315	43	15	8	32	1.77
18806213--18806689	186	2.6	185	86	4	647	35	13	10	40	1.79
18806535--18806847	158	2.0	158	87	2	450	36	14	8	40	1.77
18806770--18807110	170	2.0	168	86	2	468	36	14	9	39	1.79
18806968--18807252	124	2.3	124	81	1	345	38	14	8	38	1.77
18807165--18807299	62	2.2	61	82	6	157	35	13	7	43	1.72
18807820--18807872	25	2.1	25	85	0	70	20	7	26	45	1.78
18807833--18807872	13	3.2	13	82	7	55	20	7	27	45	1.78
18807801--18807863	12	5.2	12	76	3	54	25	7	25	41	1.82
18810487--18810526	21	2.0	20	85	5	53	35	2	5	57	1.34
18813220--18813266	11	4.3	11	78	7	51	42	0	0	57	0.98
18815344--18815400	20	2.9	19	75	17	62	38	7	1	52	1.39
18823019--18823048	12	2.5	12	94	0	51	50	16	13	20	1.78
18830689--18830756	24	3.1	21	67	20	59	58	4	2	33	1.33
18830689--18830758	21	3.2	21	70	21	63	58	4	2	34	1.32
18831179--18831236	22	2.6	22	81	10	64	75	12	5	6	1.16
18832884--18832928	14	3.3	13	87	9	63	71	0	0	28	0.87
18833769--18833816	22	2.1	22	88	3	69	54	0	4	41	1.20
18835179--18835354	67	2.6	65	77	8	194	28	8	27	35	1.86
18835439--18835583	75	1.9	75	92	2	247	31	11	25	31	1.90
18836912--18836951	16	2.4	18	80	16	50	60	2	0	37	1.11
18838958--18839011	22	2.4	22	84	3	63	29	5	1	62	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18839091--18839115	11	2.3	11	100	0	50	16	0	0	84	0.63
18839091--18839128	19	1.9	19	89	5	58	15	0	2	81	0.80
18839284--18839344	20	3.0	20	76	9	54	73	3	1	21	1.06
18839320--18839346	11	2.5	11	100	0	54	85	0	0	14	0.61
18840420--18840492	28	2.6	28	91	0	110	36	20	19	23	1.95
18840729--18841664	48	19.2	48	74	7	577	38	19	11	30	1.87
18840799--18841697	146	6.1	145	84	5	931	38	20	11	29	1.87
18842522--18842555	15	2.1	16	89	10	52	2	5	2	88	0.70
18853802--18853864	26	2.5	26	80	12	69	31	1	0	66	1.01
18854315--18854502	93	2.0	94	94	1	333	20	21	16	42	1.90
18859764--18859799	13	2.8	13	88	12	56	11	0	8	80	0.90
18859790--18859831	18	2.5	17	81	11	50	28	0	0	71	0.86
18859790--18859831	15	2.7	15	82	14	50	28	0	0	71	0.86
18861261--18861289	2	15.0	2	92	7	51	48	0	0	51	1.00
18863109--18863260	81	1.9	80	84	4	207	36	7	12	44	1.70
18863181--18863274	44	2.1	44	86	5	127	34	6	13	45	1.69
18863297--18863339	22	2.0	22	85	0	59	32	6	9	51	1.61
18863468--18863510	17	2.5	17	85	7	52	34	16	9	39	1.80
18863514--18863599	17	4.9	17	66	16	50	34	13	11	39	1.82
18863576--18863722	75	2.0	74	79	5	161	31	10	10	46	1.72
18864146--18864649	42	11.7	43	71	12	259	28	13	14	43	1.83
18864146--18864661	85	6.0	84	76	4	406	28	13	14	43	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18864352--18864757	44	9.3	42	72	12	180	29	14	13	42	1.83
18864492--18864752	44	5.9	44	76	14	216	29	14	13	42	1.84
18864522--18864750	89	2.6	89	84	7	304	28	14	13	43	1.83
18866169--18866200	14	2.3	14	94	0	55	28	3	12	56	1.51
18866251--18866447	105	1.9	107	81	2	245	42	8	9	39	1.67
18866421--18866472	25	2.1	25	85	7	70	51	1	1	44	1.23
18867611--18867645	12	2.9	12	100	0	70	8	40	25	25	1.84
18870007--18870044	19	2.0	19	89	0	58	47	15	26	10	1.78
18871010--18871047	18	2.1	18	85	9	51	31	2	0	65	1.06
18871356--18871383	2	14.0	2	100	0	56	50	0	0	50	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121