genome.fa.s79.2.7.7.80.10.50.1000.67.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167904.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_17, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  21107920

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   

This is table  67  of  121  ( 14423 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11536526--11536588	30	2.1	31	87	3	92	28	7	12	50	1.68
11536556--11536771	41	5.2	41	84	5	281	31	6	11	50	1.63
11536966--11537027	18	3.5	18	76	10	56	30	4	8	56	1.49
11537087--11537144	23	2.5	23	100	0	116	29	5	13	51	1.63
11537050--11537180	58	2.2	59	84	10	171	28	6	12	53	1.62
11537099--11537181	23	4.3	18	72	17	53	30	4	13	51	1.61
11537110--11537181	35	2.0	36	89	2	110	29	5	13	51	1.64
11548773--11549170	42	9.4	42	81	4	397	28	13	20	37	1.90
11548773--11549167	85	4.6	85	81	8	403	28	13	20	37	1.90
11549414--11549467	6	9.0	6	83	0	72	27	1	5	64	1.26
11549412--11549469	18	3.3	17	83	9	80	25	1	5	67	1.21
11549416--11549467	24	2.2	24	92	0	86	26	1	5	65	1.26
11549416--11549477	24	2.6	24	89	2	81	24	3	6	66	1.30
11550047--11550165	25	5.1	25	70	16	94	30	3	10	55	1.51
11549999--11550359	20	17.5	20	71	19	133	29	5	12	52	1.62
11550147--11550239	31	3.1	31	77	9	95	30	6	11	51	1.63
11550137--11550359	103	2.2	103	81	6	247	30	5	12	51	1.63
11550206--11550359	21	7.4	20	76	10	116	29	5	13	51	1.64
11550206--11550359	62	2.5	61	86	5	202	29	5	13	51	1.64
11550206--11550359	41	3.7	43	84	6	178	29	5	13	51	1.64
11550446--11550489	19	2.3	19	88	4	61	29	4	11	54	1.56
11550644--11550699	24	2.4	24	87	3	78	26	5	16	51	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11550664--11550736	35	2.1	36	89	2	112	28	5	13	52	1.63
11550622--11550735	59	1.9	60	90	3	185	28	5	14	51	1.64
11551907--11551955	15	3.4	14	83	13	64	77	4	16	2	1.01
11552797--11552925	63	2.0	64	90	1	206	40	7	14	37	1.75
11553078--11553142	20	3.2	20	75	0	67	30	12	15	41	1.84
11553424--11553570	43	3.5	42	71	5	109	31	21	13	33	1.92
11553567--11553669	42	2.4	42	86	1	134	34	24	13	27	1.93
11553502--11553691	43	4.5	43	75	7	120	33	22	14	30	1.93
11553675--11553716	20	2.0	20	86	4	57	33	19	11	35	1.88
11557717--11557765	26	1.9	25	87	4	71	46	4	2	46	1.33
11559654--11559756	16	6.1	16	72	19	75	52	1	0	44	1.18
11559620--11559685	25	2.6	24	86	13	96	51	0	3	45	1.16
11559620--11559691	26	3.0	24	77	16	69	50	0	2	47	1.15
11559657--11559716	17	3.6	17	78	10	54	51	1	0	46	1.10
11559677--11559730	17	2.9	20	71	23	55	53	1	0	44	1.11
11559654--11559751	19	5.6	18	72	17	73	53	1	1	44	1.14
11559796--11559924	15	9.0	15	78	14	121	43	0	1	55	1.09
11559779--11559919	8	17.5	8	69	18	80	43	0	1	55	1.08
11559769--11559921	42	3.7	41	78	17	158	41	0	1	56	1.12
11562192--11562230	19	1.9	19	85	10	51	28	2	0	69	1.02
11562646--11562686	16	2.6	16	100	0	82	31	14	34	19	1.92
11566102--11567854	468	3.7	465	79	7	1687	50	5	12	32	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11567372--11567416	16	2.7	17	80	13	58	64	2	6	26	1.30
11566066--11567854	237	7.6	233	77	8	1326	50	5	12	32	1.62
11566080--11567857	699	2.5	698	80	6	1897	50	5	11	32	1.62
11568648--11568961	100	3.1	102	80	8	372	42	8	11	38	1.71
11570124--11570176	20	2.6	21	82	5	74	32	18	11	37	1.87
11570125--11570183	20	3.0	20	82	5	57	30	18	10	40	1.84
11571873--11571897	13	1.9	13	100	0	50	84	0	8	8	0.79
11571876--11571912	18	2.2	17	90	9	58	83	0	5	10	0.79
11571940--11571975	18	1.9	19	88	5	56	44	11	22	22	1.84
11573007--11573037	14	2.2	14	94	0	53	29	6	9	54	1.57
11573095--11573126	14	2.3	14	94	0	55	31	6	9	53	1.58
11572967--11573200	89	2.6	88	86	0	315	27	11	13	46	1.79
11573597--11574147	46	12.2	45	73	9	295	35	7	15	42	1.74
11573719--11573936	22	9.7	23	70	10	94	34	7	15	42	1.75
11573872--11573978	22	4.8	22	74	11	65	32	8	16	42	1.79
11573869--11573952	44	1.9	44	82	4	107	32	9	16	41	1.81
11573544--11573978	90	4.8	89	75	6	317	36	8	16	39	1.78
11573927--11573976	24	2.1	24	85	7	66	30	8	16	46	1.75
11573990--11574043	22	2.4	22	82	11	65	29	3	9	57	1.47
11574037--11574109	22	3.3	22	79	7	85	34	8	8	49	1.62
11574618--11574890	60	4.6	58	80	14	277	36	15	6	41	1.73
11574620--11574928	59	5.2	58	79	11	277	35	14	7	42	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11574620--11574928	119	2.5	121	79	10	364	35	14	7	42	1.74
11575045--11575187	5	27.6	5	73	14	62	73	1	4	20	1.08
11575045--11575131	6	14.5	6	76	18	76	79	0	5	14	0.91
11575044--11575129	44	2.0	43	86	11	122	77	0	6	15	0.96
11575045--11575131	17	4.9	17	79	20	90	79	0	5	14	0.91
11575453--11575502	26	2.0	25	84	4	64	0	44	0	56	0.99
11576023--11576067	23	1.9	23	82	13	56	64	0	6	28	1.19
11576033--11576125	41	2.3	41	85	7	118	59	3	5	32	1.36
11576034--11576138	21	5.1	21	73	11	85	60	2	4	32	1.32
11576144--11576177	13	2.5	13	90	9	50	82	0	17	0	0.67
11576226--11576298	15	4.7	15	74	15	69	71	1	2	24	1.07
11576262--11576314	21	2.7	19	83	13	56	75	1	1	20	0.99
11576262--11576315	19	2.7	19	80	11	56	75	1	1	20	0.98
11576487--11576624	42	3.2	44	80	6	131	42	21	13	22	1.88
11576676--11576808	44	3.1	44	88	3	182	37	21	15	25	1.93
11577807--11577842	8	4.9	8	80	19	51	8	11	0	80	0.90
11577815--11577841	13	2.1	13	100	0	54	7	7	0	85	0.75
11577802--11577842	21	2.0	21	100	0	82	7	9	0	82	0.83
11579468--11579684	107	2.0	107	90	0	337	31	23	12	32	1.92
11588525--11588605	26	3.2	26	63	19	71	39	8	4	46	1.56
11588488--11588604	50	2.5	47	85	13	145	40	11	5	43	1.62
11588638--11588730	5	17.8	5	80	16	93	78	0	4	17	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11588638--11588730	17	5.5	17	76	17	88	78	0	4	17	0.91
11588638--11588731	6	15.7	6	76	15	88	78	0	4	17	0.90
11588638--11588731	37	2.6	36	85	9	122	78	0	4	17	0.90
11588756--11588796	17	2.4	17	92	8	66	73	0	2	24	0.96
11588633--11588807	9	19.9	8	66	21	50	73	1	4	20	1.08
11589644--11589735	21	4.2	22	75	9	73	59	5	3	31	1.36
11589681--11589739	16	3.6	16	79	18	59	61	1	1	35	1.16
11589746--11589776	9	3.3	9	95	4	53	87	0	12	0	0.55
11589744--11589774	15	2.1	15	93	0	53	83	0	16	0	0.64
11589839--11589908	8	8.6	8	70	9	52	77	2	2	17	1.02
11589837--11589910	32	2.4	31	80	8	78	77	2	2	17	1.01
11589837--11589892	25	2.2	25	80	0	67	76	1	1	19	0.96
11589872--11589907	15	2.4	15	85	0	54	77	5	2	13	1.05
11590128--11590178	18	2.9	17	74	5	57	35	15	11	37	1.84
11590196--11590277	34	2.4	34	79	2	83	37	17	17	28	1.92
11590216--11590281	34	1.9	34	84	0	87	36	16	16	30	1.91
11590812--11590857	23	2.0	23	83	12	58	56	15	4	23	1.57
11591344--11591498	65	2.5	62	79	10	170	45	6	9	39	1.62
11592943--11592987	18	2.4	18	81	3	54	26	11	0	62	1.29
11594208--11594257	7	7.4	7	82	13	61	52	0	0	48	1.00
11594202--11594255	6	8.5	6	80	15	56	51	0	0	48	1.00
11594201--11594257	13	4.4	13	81	14	73	52	0	0	47	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11604837--11604887	22	2.2	23	72	10	50	80	7	0	11	0.90
11604837--11604886	23	2.2	23	82	10	59	80	8	0	12	0.92
11609197--11609227	12	2.6	12	94	0	53	3	16	48	32	1.62
11609350--11609398	17	2.9	17	82	14	57	34	0	0	65	0.93
11609351--11609391	16	2.5	17	92	7	68	34	0	0	65	0.93
11609425--11609465	14	2.9	14	88	3	55	75	0	0	24	0.80
11609431--11609470	5	8.2	5	86	5	55	75	0	2	22	0.93
11609980--11610637	104	6.3	104	79	6	605	48	12	22	17	1.80
11610225--11610300	35	2.3	34	81	6	93	52	13	18	15	1.74
11610035--11610631	316	1.9	314	82	4	754	48	11	23	16	1.79

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121