genome.fa.s79.2.7.7.80.10.50.1000.107.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167904.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_17, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  21107920

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   

This is table  107  of  121  ( 14423 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18264788--18264817	13	2.3	13	100	0	60	70	0	0	30	0.88
18267656--18267682	2	13.5	2	100	0	54	0	48	0	51	1.00
18270534--18270775	121	2.0	121	95	0	430	26	18	24	30	1.98
18283009--18283040	5	6.4	5	92	0	55	78	0	21	0	0.76
18284760--18284795	16	2.2	16	90	0	54	0	11	2	86	0.68
18287869--18287898	15	2.0	15	93	0	51	16	20	3	60	1.50
18289949--18290001	22	2.3	23	83	3	72	64	0	1	33	1.05
18292927--18292978	27	1.9	27	92	7	88	38	3	3	53	1.37
18298982--18299037	21	2.8	19	78	8	58	55	12	1	30	1.47
18298982--18299047	21	3.2	21	77	8	57	53	13	3	30	1.55
18299033--18299072	16	2.5	16	91	0	62	40	22	2	35	1.68
18301610--18301668	13	4.9	12	70	13	50	30	11	3	54	1.53
18301659--18301688	15	2.0	15	93	0	51	43	6	0	50	1.28
18310029--18310066	19	1.9	19	89	5	58	76	2	5	15	1.08
18310025--18310081	30	1.9	30	86	13	82	75	3	5	15	1.12
18311024--18311066	18	2.5	16	79	17	50	37	11	18	32	1.87
18311270--18311338	35	2.0	35	85	0	93	36	11	13	39	1.80
18311223--18311333	52	2.1	53	81	5	127	38	10	10	39	1.75
18311465--18311503	17	2.3	17	86	8	53	41	10	5	43	1.61
18311442--18311518	34	2.2	34	79	2	82	38	10	11	38	1.76
18311608--18311740	64	2.1	64	84	5	171	41	17	12	29	1.85
18311690--18311743	17	3.2	17	82	10	58	35	14	12	37	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18311702--18311804	17	5.9	17	71	17	63	38	13	11	35	1.81
18311501--18311768	145	1.9	143	80	5	315	41	14	11	32	1.82
18312028--18312197	45	3.8	43	72	12	128	45	11	7	34	1.69
18312041--18312112	23	3.2	22	73	11	58	44	15	8	31	1.76
18312176--18312219	22	2.0	23	86	4	63	56	6	6	29	1.51
18312344--18313114	389	2.0	384	92	1	1265	41	16	10	31	1.82
18315385--18315656	143	1.9	143	90	1	429	53	12	7	26	1.64
18317385--18317429	19	2.4	19	85	7	56	68	0	6	24	1.13
18318021--18318074	25	2.2	25	83	6	65	38	5	18	37	1.74
18318571--18318596	4	6.5	4	100	0	52	23	0	0	76	0.78
18318620--18318667	11	4.4	11	84	7	53	14	2	2	81	0.88
18318619--18318662	6	7.5	6	80	14	56	13	2	2	81	0.88
18318619--18318681	29	2.2	29	82	5	74	14	6	1	77	1.03
18318709--18319364	59	11.0	59	83	7	778	44	7	12	35	1.70
18318711--18319364	120	5.5	118	88	5	817	44	7	12	35	1.70
18318718--18319362	179	3.6	178	87	4	924	44	6	13	35	1.70
18321662--18321686	6	4.2	6	100	0	50	68	0	0	32	0.90
18323071--18323118	23	2.0	24	84	4	62	35	6	20	37	1.78
18330349--18330521	65	2.6	63	79	11	154	49	2	8	39	1.49
18330343--18330543	22	9.2	21	70	14	77	48	2	8	39	1.49
18330740--18330910	22	7.9	22	69	13	86	46	7	11	35	1.67
18330740--18330783	21	2.0	21	91	4	70	47	6	11	34	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18330745--18330829	21	4.0	21	76	8	66	49	7	5	37	1.54
18330845--18330968	22	5.7	22	69	7	65	51	2	8	37	1.46
18331051--18331098	22	2.2	22	81	7	53	33	4	14	47	1.63
18331157--18331289	22	6.1	22	73	0	88	45	7	5	41	1.55
18331568--18331796	22	10.6	22	69	15	95	50	3	6	39	1.45
18331608--18331754	44	3.3	45	76	8	122	48	4	6	39	1.51
18331741--18331773	15	2.2	15	94	0	57	54	3	6	36	1.41
18331885--18331926	22	1.9	22	90	0	66	59	9	2	28	1.41
18331910--18331957	22	2.2	22	85	7	62	52	2	6	39	1.39
18331921--18331962	22	1.9	22	100	0	84	45	0	9	45	1.36
18331923--18331985	22	2.9	21	85	4	72	46	3	9	41	1.52
18332054--18332211	66	2.4	66	82	6	169	44	6	8	39	1.61
18332027--18332210	22	8.4	22	71	7	104	46	6	7	39	1.58
18332193--18332273	22	3.8	22	75	8	69	44	3	9	41	1.55
18332117--18332241	66	1.9	66	84	0	169	44	5	8	40	1.59
18332237--18332275	19	2.1	19	90	0	60	51	0	5	43	1.24
18332614--18332668	21	2.6	22	74	8	60	47	10	5	36	1.62
18332723--18332761	20	1.9	20	89	5	60	46	12	5	35	1.65
18333610--18333673	23	2.7	23	75	15	60	15	0	6	78	0.95
18333621--18333655	18	2.1	17	89	10	54	17	0	8	74	1.06
18335659--18335693	17	2.0	18	88	5	54	8	14	0	77	0.99
18336584--18336639	26	2.2	25	81	9	60	7	8	0	83	0.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18337159--18337210	7	7.3	7	75	12	52	15	3	1	78	0.98
18337157--18337210	21	2.5	21	85	8	65	16	3	1	77	1.00
18337160--18337210	15	3.6	14	80	12	59	15	3	1	78	0.99
18338313--18338360	12	4.0	12	88	0	60	50	20	0	29	1.49
18338337--18338383	16	2.9	16	87	0	58	46	14	4	34	1.64
18338313--18338360	8	6.0	8	82	0	60	50	20	0	29	1.49
18340400--18340505	54	2.0	54	81	3	124	46	3	10	39	1.56
18341186--18341211	2	13.0	2	100	0	52	50	0	0	50	1.00
18341685--18341743	23	2.6	23	86	5	75	50	0	6	42	1.28
18341896--18341949	21	2.6	21	84	0	72	42	1	7	48	1.42
18341841--18341946	48	2.2	48	81	6	117	39	0	7	51	1.37
18341896--18341948	11	5.0	11	80	13	58	43	1	7	47	1.42
18343045--18343076	14	2.3	14	94	0	55	46	6	25	21	1.74
18343679--18343752	22	3.4	22	76	10	55	43	2	13	40	1.58
18343834--18344117	22	13.0	22	69	4	90	50	4	7	37	1.51
18344037--18344175	11	12.1	11	65	15	59	53	2	7	36	1.42
18344063--18344181	61	2.0	61	80	6	134	51	1	9	37	1.44
18344122--18344198	22	3.5	21	78	7	73	53	2	9	35	1.47
18344586--18344633	19	2.5	19	75	0	51	22	14	16	45	1.84
18349417--18349485	21	3.0	23	77	14	70	78	0	11	10	0.97
18349436--18349485	11	4.2	11	78	16	55	82	0	12	6	0.85
18350809--18350848	21	1.9	21	94	0	71	42	10	12	35	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18350758--18350905	79	1.9	79	87	2	217	39	12	15	32	1.84
18350830--18350964	58	2.3	58	87	0	198	40	12	16	31	1.86
18350888--18351063	79	2.2	79	91	0	298	39	13	15	32	1.85
18350760--18351042	137	2.1	137	93	0	485	39	13	15	32	1.86
18351025--18351387	21	17.8	21	74	13	269	40	11	13	34	1.80
18351159--18351283	38	3.2	38	65	18	103	38	12	14	34	1.84
18351189--18351244	20	2.7	21	83	2	69	39	12	14	33	1.83
18351132--18351323	79	2.4	79	94	0	330	41	11	13	33	1.80
18350888--18351387	263	1.9	263	91	1	824	40	12	13	34	1.82
18351056--18351489	221	2.0	217	88	3	638	39	11	13	34	1.82
18351791--18352056	41	6.4	41	86	3	327	24	10	20	44	1.83
18351791--18352056	83	3.2	83	85	3	349	24	10	20	44	1.83
18351791--18352025	124	1.9	124	89	3	366	24	11	21	43	1.84
18353002--18353039	10	3.7	10	89	6	58	13	0	13	73	1.09
18353100--18353134	19	1.9	18	88	11	54	68	5	5	20	1.31
18353152--18353206	25	2.2	26	83	9	69	49	3	7	40	1.48
18354160--18354234	22	3.4	22	83	8	100	61	0	6	32	1.22
18354152--18354341	44	4.4	44	76	7	126	53	4	6	35	1.47
18354198--18354234	12	3.2	12	77	14	51	62	0	5	32	1.18
18354160--18354343	22	8.6	20	74	14	95	54	4	6	34	1.48
18354184--18354345	85	1.9	85	81	7	195	53	5	6	35	1.49
18354454--18354554	22	4.6	22	74	4	87	46	7	7	37	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18354965--18355112	22	6.7	22	69	17	83	48	6	8	35	1.61
18355075--18355124	21	2.3	22	83	10	68	48	4	8	40	1.51
18355195--18355246	22	2.4	21	87	9	77	53	5	7	32	1.53
18355235--18355339	22	4.7	23	74	7	74	42	4	12	40	1.63
18356272--18356315	18	2.5	17	81	3	52	34	2	0	63	1.07
18356947--18356977	16	1.9	16	100	0	62	9	51	19	19	1.74
18357469--18357518	11	4.5	11	79	18	59	8	8	54	30	1.58
18357517--18357556	11	3.6	11	96	0	71	5	10	57	27	1.52
18357638--18357684	18	2.8	17	81	12	53	48	0	2	48	1.13
18357800--18357828	8	3.6	8	100	0	58	13	0	0	86	0.58

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121