genome.fa.s79.2.7.7.80.10.50.1000.108.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167904.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_17, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  21107920

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   

This is table  108  of  121  ( 14423 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18357851--18358177	47	6.7	47	81	10	363	33	25	12	28	1.92
18357851--18358177	96	3.3	96	87	4	460	33	25	12	28	1.92
18359564--18359835	58	4.7	57	81	14	342	34	12	7	45	1.70
18359564--18359835	118	2.3	113	86	10	381	34	12	7	45	1.70
18359564--18359842	117	2.4	114	85	11	379	34	11	8	45	1.71
18359865--18359927	6	10.3	6	74	8	56	76	1	4	17	1.04
18361068--18361121	19	2.8	19	77	0	54	81	1	9	7	0.94
18361143--18361181	21	1.9	21	89	5	62	15	28	35	20	1.93
18366530--18366576	15	3.1	15	90	3	76	48	4	25	21	1.68
18369745--18370198	57	7.7	57	86	9	610	33	14	8	42	1.76
18369745--18370182	120	3.7	118	92	4	676	33	15	8	42	1.77
18369745--18370182	115	3.7	118	92	5	676	33	15	8	42	1.77
18370283--18370337	1	55.0	1	77	0	56	89	3	1	5	0.66
18370655--18370699	20	2.3	20	80	3	56	26	20	24	28	1.99
18370752--18370822	31	2.3	31	90	0	106	25	25	23	25	2.00
18371475--18371923	116	3.8	117	88	5	660	45	6	13	35	1.68
18371473--18371923	59	7.7	59	87	6	620	45	6	13	35	1.69
18372650--18372688	20	2.0	20	84	0	51	53	0	0	46	1.00
18374296--18374381	29	2.9	30	81	6	86	48	1	10	39	1.45
18374308--18374381	29	2.5	30	82	4	87	51	1	10	36	1.46
18374287--18374390	30	3.5	30	71	15	90	46	2	11	39	1.55
18374955--18374993	20	2.0	20	89	0	60	23	30	7	38	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18377077--18377116	19	2.2	19	86	4	55	60	7	0	32	1.25
18378079--18378145	12	5.9	11	72	10	55	56	1	1	40	1.17
18378083--18378151	23	3.0	23	87	10	88	55	1	1	42	1.18
18379890--18379943	27	2.0	27	92	0	90	22	22	14	40	1.90
18380315--18380364	21	2.4	21	84	15	61	38	4	0	58	1.17
18381389--18381455	12	5.9	11	72	10	55	56	1	1	40	1.17
18381393--18381461	23	3.0	23	87	10	88	55	1	1	42	1.18
18381516--18381553	3	12.7	3	83	10	51	63	0	2	34	1.09
18382906--18382949	19	2.2	20	84	12	54	52	31	2	13	1.53
18383579--18383628	21	2.4	21	84	15	61	38	4	0	58	1.17
18384658--18384724	12	5.9	11	72	10	55	56	1	1	40	1.17
18384662--18384730	23	3.0	23	87	10	88	55	1	1	42	1.18
18385990--18386054	22	3.0	21	86	6	78	44	6	6	43	1.54
18386041--18386099	22	2.7	21	74	7	55	49	5	6	38	1.52
18386514--18386660	22	6.6	22	75	12	111	47	8	8	34	1.66
18386762--18386879	22	5.4	22	73	18	84	48	4	11	36	1.58
18386740--18386887	44	3.4	45	72	16	112	50	4	10	35	1.57
18386893--18387085	22	8.8	22	73	5	113	45	9	7	37	1.64
18387576--18387631	27	2.1	27	96	0	103	53	10	3	32	1.53
18387587--18387631	16	3.1	16	70	29	55	55	11	4	28	1.54
18387575--18387633	11	6.1	10	74	20	54	50	10	3	35	1.53
18388476--18388532	4	13.8	4	78	14	53	17	1	3	77	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18388476--18388532	9	6.9	8	76	11	53	17	1	3	77	1.00
18389167--18389215	23	2.1	24	84	3	64	61	2	2	34	1.19
18391557--18391680	30	4.1	31	80	12	125	23	0	27	48	1.56
18391661--18391729	14	4.9	14	76	0	66	15	1	33	49	1.54
18391633--18391774	28	4.9	28	75	10	117	19	1	30	47	1.58
18391664--18391775	14	7.9	13	71	15	62	19	1	30	48	1.59
18392044--18392128	19	4.4	18	75	17	50	32	3	1	62	1.20
18392083--18392129	3	15.7	3	95	0	85	31	0	2	65	1.04
18392187--18392239	19	2.8	19	88	8	74	20	1	0	77	0.87
18393981--18394006	2	13.0	2	100	0	52	50	0	0	50	1.00
18394680--18394736	21	2.8	20	86	7	78	36	3	7	52	1.46
18396399--18396472	22	3.4	22	76	10	55	43	2	13	40	1.58
18396555--18396625	22	3.2	22	82	7	72	50	1	7	40	1.38
18396654--18396713	22	2.7	22	77	10	59	46	11	10	31	1.73
18396836--18397243	22	18.8	22	70	10	158	49	6	9	35	1.61
18397100--18397136	12	3.2	12	77	14	51	62	0	5	32	1.18
18397086--18397201	41	2.7	43	84	4	137	53	6	6	33	1.52
18397086--18397246	85	1.9	85	84	5	218	50	6	8	34	1.58
18397351--18397470	22	5.5	22	77	12	104	46	7	7	38	1.60
18397351--18397470	44	2.8	45	80	8	115	46	7	7	38	1.60
18397887--18397993	22	4.8	22	72	15	76	47	8	8	35	1.64
18397871--18397993	44	2.7	45	75	9	126	48	8	8	34	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18397976--18398016	22	1.9	21	85	5	55	56	4	2	36	1.34
18398096--18398146	22	2.3	22	80	12	68	54	7	5	31	1.53
18398155--18398212	22	2.6	21	76	10	62	41	6	12	39	1.69
18398161--18398234	22	3.4	22	78	0	76	40	5	13	40	1.67
18398304--18398423	22	5.5	22	74	7	91	45	9	6	38	1.62
18398329--18398453	66	1.9	66	80	3	144	43	8	8	40	1.65
18398959--18398992	16	2.1	17	88	5	52	58	11	2	26	1.47
18400522--18400587	23	2.8	24	80	13	82	65	0	3	31	1.08
18400521--18400587	25	2.8	25	86	4	93	65	0	2	31	1.07
18403303--18403369	17	3.8	17	78	11	64	8	11	1	77	1.05
18403322--18403369	18	2.6	19	77	12	55	12	12	0	75	1.06
18403893--18403931	15	2.8	13	82	14	51	15	2	0	82	0.79
18403893--18403932	14	2.9	14	85	10	55	15	2	0	82	0.77
18408849--18408937	29	3.1	28	82	7	90	24	11	12	51	1.72
18408881--18408920	19	2.0	20	85	4	55	22	15	12	50	1.77
18408877--18408950	29	2.6	29	82	0	94	22	13	12	51	1.74
18410225--18410273	20	2.5	20	100	0	98	32	10	8	48	1.66
18413161--18413241	24	3.3	25	81	5	94	60	0	0	39	0.97
18420900--18420977	31	2.5	32	71	22	76	39	1	2	56	1.21
18421221--18421246	13	2.0	13	100	0	52	38	0	7	53	1.30
18421559--18421596	2	19.0	2	100	0	76	50	0	0	50	1.00
18429300--18429364	15	4.1	15	74	16	60	52	3	3	41	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18429299--18429383	34	2.5	33	79	7	109	49	5	4	40	1.48
18429486--18429549	33	1.9	33	84	6	85	43	1	7	46	1.42
18429538--18429579	18	2.3	19	76	12	52	54	0	2	42	1.13
18429531--18429580	19	2.8	18	84	6	66	50	0	4	46	1.20
18437791--18437833	3	14.3	3	80	0	50	44	0	0	55	0.99
18437788--18437833	12	3.8	12	91	2	74	43	0	0	56	0.99
18437794--18437843	24	2.1	24	85	7	66	48	2	2	48	1.24
18437973--18438024	12	4.2	12	76	13	52	9	3	1	84	0.82
18437983--18438023	16	2.6	15	85	11	55	12	0	2	85	0.70
18438026--18438206	49	3.8	49	83	2	233	37	22	11	29	1.89
18450964--18451009	19	2.4	19	92	3	74	13	34	30	21	1.91
18451568--18451612	3	15.0	3	85	0	63	40	0	0	60	0.97
18454626--18454948	168	1.9	168	90	2	515	35	21	10	31	1.88
18458869--18458920	2	26.0	2	80	7	52	46	5	3	44	1.45
18462659--18462747	16	5.8	16	70	11	51	50	28	2	19	1.59
18462664--18462747	30	2.7	31	78	15	77	50	28	2	19	1.60
18465913--18466112	106	1.9	107	85	3	278	47	2	5	45	1.38
18467435--18467488	24	2.3	24	81	9	67	48	11	5	35	1.62
18468734--18468771	2	19.0	2	88	0	58	55	0	44	0	0.99
18474924--18474987	34	1.9	32	84	6	83	50	4	1	43	1.32
18486675--18486833	80	2.0	80	94	0	282	26	18	13	41	1.88
18490495--18490532	20	1.9	20	88	0	58	55	2	2	39	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18493708--18493735	13	2.2	13	100	0	56	7	14	0	78	0.95
18503721--18503778	29	2.0	29	86	3	80	53	1	8	36	1.42
18503731--18503788	29	2.0	29	89	0	89	55	0	6	37	1.27
18509707--18509746	18	2.2	18	86	0	53	52	5	2	40	1.37
18519700--18519749	21	2.4	22	83	10	68	40	0	0	60	0.97
18520269--18520320	26	2.0	26	85	7	70	50	0	0	50	1.00
18520433--18520548	41	2.9	38	71	13	92	43	6	0	49	1.33
18520932--18520971	20	2.0	21	85	14	57	42	10	5	42	1.60
18521854--18521959	30	3.6	30	73	5	90	51	6	3	37	1.46
18523544--18523612	34	2.0	34	100	0	138	31	26	17	24	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121