genome.fa.s79.2.7.7.80.10.50.1000.48.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167904.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_17, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  21107920

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   

This is table  48  of  121  ( 14423 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8366587--8366676	41	2.2	42	84	9	114	21	3	3	72	1.14
8366994--8367030	19	1.9	19	88	0	56	29	13	16	40	1.86
8367416--8367579	5	30.8	5	69	20	59	19	3	3	73	1.11
8367416--8367579	6	27.5	6	68	16	56	19	3	3	73	1.11
8367485--8367531	17	2.9	16	78	6	51	14	4	2	78	0.99
8367496--8367583	30	3.1	29	76	20	80	14	4	3	77	1.06
8367493--8367584	17	5.0	17	73	21	62	16	4	3	76	1.08
8367596--8368035	57	7.7	57	79	8	446	44	5	12	36	1.67
8367596--8368035	116	3.8	113	84	4	542	44	5	12	36	1.67
8367596--8368036	172	2.6	171	82	6	532	44	5	12	36	1.67
8373687--8373738	25	2.1	25	100	0	104	15	38	7	38	1.76
8375924--8375976	2	27.5	2	92	7	92	50	49	0	0	1.00
8389611--8389663	3	17.7	3	100	0	106	66	0	0	33	0.92
8392755--8392780	12	2.2	12	100	0	52	30	0	7	61	1.24
8394300--8394330	2	15.5	2	100	0	62	0	0	48	51	1.00
8397165--8397211	23	2.0	23	100	0	94	29	4	21	44	1.71
8398918--8398951	13	2.4	15	90	9	54	29	0	0	70	0.87
8399765--8399841	6	13.3	6	75	11	54	0	20	0	79	0.74
8399771--8399825	24	2.5	22	83	16	69	0	23	0	76	0.79
8399776--8399825	23	2.1	23	89	10	75	0	24	0	76	0.80
8399771--8399834	22	2.8	22	78	17	60	0	23	0	76	0.79
8399771--8399835	23	2.8	22	80	15	69	0	23	0	76	0.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8399779--8399836	19	3.2	18	75	22	59	0	24	0	75	0.80
8401192--8401258	3	22.7	3	90	3	109	67	2	0	29	1.06
8401724--8401832	22	5.0	21	78	9	110	33	15	20	30	1.94
8401716--8401823	45	2.4	44	79	11	130	34	13	21	30	1.92
8401884--8402167	126	2.3	126	81	3	331	33	14	16	35	1.89
8402024--8402084	22	2.8	22	74	0	59	26	18	22	32	1.97
8404296--8404337	18	2.2	20	91	8	70	0	14	4	80	0.86
8404296--8404352	20	2.9	19	82	14	64	1	14	3	80	0.92
8404311--8404352	19	2.2	19	91	4	66	2	11	0	85	0.68
8404315--8404353	13	2.9	13	84	3	51	5	12	0	82	0.83
8413400--8413449	21	2.5	20	75	21	50	22	4	6	68	1.29
8416372--8416410	21	2.0	20	90	10	62	56	7	20	15	1.63
8424900--8424945	21	2.2	21	84	0	56	43	8	4	43	1.55
8425581--8425631	18	2.7	19	90	6	77	76	0	5	17	0.98
8425582--8425632	9	5.4	9	79	6	57	74	0	5	19	1.02
8428535--8428576	21	2.1	19	83	16	50	64	0	2	33	1.07
8428787--8428837	4	12.0	4	88	12	59	76	1	0	21	0.88
8437220--8437253	6	5.7	6	92	0	59	50	0	2	47	1.16
8441484--8441631	51	2.9	52	77	4	147	38	8	15	37	1.77
8442124--8442172	20	2.5	19	83	3	53	16	6	2	75	1.09
8442129--8442179	10	5.1	10	79	13	52	17	5	1	74	1.11
8454034--8454074	21	2.0	21	85	0	55	17	4	14	63	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8458115--8458162	21	2.3	21	96	0	87	45	22	6	25	1.75
8458762--8458824	30	2.1	30	96	0	117	9	20	6	63	1.46
8460761--8460798	20	1.9	20	88	0	58	68	0	0	31	0.90
8460857--8460884	2	14.0	2	100	0	56	50	0	0	50	1.00
8462639--8462680	2	21.0	2	85	0	57	42	0	4	52	1.22
8465598--8465640	22	2.0	22	85	0	59	37	11	9	41	1.74
8468127--8468158	2	16.0	2	100	0	64	50	50	0	0	1.00
8470220--8470249	2	15.0	2	100	0	60	50	0	0	50	1.00
8473212--8473361	77	1.9	77	85	2	203	36	14	13	35	1.85
8474438--8475077	317	2.0	317	98	0	1235	34	23	11	30	1.90
8489061--8489104	23	2.0	23	86	4	63	4	13	0	81	0.83
8489153--8489189	18	1.9	18	89	10	56	5	18	0	75	0.99
8490389--8490432	21	2.1	21	83	8	54	13	9	2	75	1.14
8490731--8490775	18	2.4	19	85	14	58	57	15	13	13	1.65
8491385--8491561	43	4.2	43	76	11	134	44	12	13	29	1.81
8491385--8491561	42	4.2	42	76	9	139	44	12	13	29	1.81
8491385--8491566	85	2.2	84	81	7	208	43	12	13	30	1.81
8491409--8491564	43	3.7	42	76	9	138	43	12	14	29	1.82
8491611--8491657	21	2.3	21	88	3	69	19	19	4	57	1.57
8492082--8492159	34	2.2	33	82	15	86	17	19	0	62	1.32
8492187--8492221	15	2.2	15	90	10	52	20	17	0	62	1.32
8492266--8492327	31	1.9	33	84	12	85	20	17	0	61	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8492372--8492412	20	2.1	19	86	4	55	14	19	4	60	1.51
8492515--8492605	32	2.8	33	83	3	105	27	19	19	32	1.96
8492947--8492981	14	2.7	13	91	8	54	5	8	0	85	0.73
8496161--8496443	142	2.0	141	96	0	521	32	15	12	39	1.85
8496572--8496629	16	3.6	15	77	13	62	18	5	27	48	1.70
8497115--8497162	12	3.8	12	76	15	51	4	18	43	33	1.69
8498124--8498177	5	11.0	5	80	11	51	0	3	12	83	0.78
8498110--8498174	17	3.8	17	80	10	69	1	4	12	81	0.91
8498100--8498174	17	4.1	20	77	20	67	1	5	10	82	0.88
8498110--8498174	34	1.9	34	87	0	94	1	4	12	81	0.91
8499414--8499452	20	2.0	20	94	0	69	48	20	2	28	1.62
8499446--8499483	18	2.1	18	90	0	58	36	21	2	39	1.67
8499600--8499628	15	1.9	15	100	0	58	44	34	13	6	1.71
8508159--8508205	17	2.7	17	86	3	58	4	23	0	72	1.02
8511562--8511601	18	2.2	19	86	4	55	65	2	0	32	1.06
8511914--8511977	27	2.5	25	73	12	58	42	3	1	53	1.26
8516290--8516320	2	15.5	2	100	0	62	48	0	51	0	1.00
8517655--8517934	139	2.0	139	100	0	560	41	16	13	27	1.86
8523179--8523314	71	1.9	71	93	0	236	36	12	7	43	1.71
8525715--8525772	22	2.5	24	77	13	66	5	29	8	56	1.51
8527352--8527407	27	2.1	27	93	0	94	44	19	8	26	1.80
8530489--8530529	16	2.4	18	80	12	50	51	0	4	43	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8531258--8531291	18	1.9	18	88	5	52	70	2	14	11	1.27
8539737--8539769	17	2.0	17	88	5	50	24	9	6	60	1.49
8546214--8546242	2	14.5	2	100	0	58	51	0	0	48	1.00
8546364--8546396	8	4.2	8	96	3	59	90	9	0	0	0.44
8552572--8552644	31	2.4	31	78	13	89	47	0	5	46	1.25
8553125--8553177	21	2.5	22	78	12	65	67	0	1	30	1.01
8554218--8554255	20	1.9	20	88	0	58	34	0	5	60	1.19
8561562--8561629	30	2.3	30	84	0	91	39	4	0	55	1.20
8562186--8562284	19	5.3	19	83	2	119	50	36	1	12	1.46
8562186--8562297	38	3.0	38	81	6	113	50	33	1	14	1.53
8562227--8562441	66	3.2	67	75	12	176	46	32	1	20	1.59
8562332--8562424	26	3.5	26	80	4	89	47	34	1	17	1.55
8562205--8562499	7	46.0	6	68	22	101	47	32	1	19	1.58
8562211--8562497	19	14.9	19	66	20	107	47	32	1	19	1.58
8564138--8564172	17	2.2	16	90	10	54	40	2	5	51	1.40
8566045--8566200	80	1.9	81	82	6	192	29	24	14	31	1.95
8566824--8566863	17	2.2	18	86	8	55	72	2	20	5	1.15
8568396--8568422	3	9.0	3	100	0	54	33	0	0	66	0.92
8572101--8572151	27	2.0	26	88	11	79	62	11	13	11	1.54
8572103--8572159	24	2.3	26	82	11	66	68	12	10	8	1.40
8574388--8574430	14	2.9	15	86	6	52	79	4	16	0	0.90
8574398--8574448	24	2.1	24	85	7	68	80	1	15	1	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8574396--8574443	16	2.9	16	82	17	62	79	2	18	0	0.84
8577380--8577505	44	2.9	44	80	4	146	59	11	6	23	1.54
8577926--8578037	48	2.3	48	92	3	179	53	12	7	26	1.64
8577960--8578032	16	4.6	16	73	19	62	53	13	8	24	1.67
8578024--8578112	40	2.2	40	95	0	160	49	11	4	34	1.59
8578024--8578162	20	6.8	20	81	5	145	47	10	5	35	1.62
8578436--8578511	27	2.8	27	77	15	77	73	6	3	15	1.19
8579832--8580009	40	4.5	40	77	4	128	35	12	11	39	1.80
8580599--8580903	50	6.1	50	75	2	236	34	10	15	39	1.81
8580600--8580887	150	1.9	150	82	2	364	34	11	15	39	1.83

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121