genome.fa.s79.2.7.7.80.10.50.1000.82.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167904.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_17, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  21107920

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   

This is table  82  of  121  ( 14423 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13984405--13984429	13	1.9	13	100	0	50	52	16	0	32	1.44
13985819--13985897	23	3.2	23	75	16	86	49	5	20	25	1.69
13985830--13985912	28	2.9	28	82	5	105	51	7	18	22	1.70
13986946--13987130	61	3.2	59	89	5	270	35	7	8	48	1.61
13987203--13987228	3	8.7	3	100	0	52	69	0	0	30	0.89
13988367--13988477	44	2.5	44	97	0	204	33	4	13	48	1.63
13989815--13989874	33	1.9	30	83	12	77	50	6	10	33	1.62
13990073--13990170	5	19.2	5	74	19	87	36	2	2	59	1.21
13990075--13990167	3	32.0	3	71	18	72	36	2	2	59	1.22
13990073--13990170	11	9.6	10	74	18	87	36	2	2	59	1.21
13990080--13990167	14	6.4	14	75	13	85	36	2	2	59	1.23
13990526--13990602	40	1.9	41	84	7	104	20	1	27	50	1.56
13990552--13990601	21	2.5	20	76	3	55	20	2	28	50	1.59
13990979--13991071	19	4.9	19	76	15	77	19	3	2	75	1.05
13991006--13991068	22	2.9	22	75	11	58	22	1	3	73	1.07
13991124--13991163	21	1.9	21	89	0	62	82	2	7	7	0.92
13996664--13996834	87	2.0	87	80	0	198	34	19	12	33	1.89
13996982--13997237	55	4.6	55	79	2	253	19	24	14	41	1.89
13996988--13997247	111	2.3	110	78	3	261	19	23	15	41	1.89
13997153--13997369	57	3.9	56	75	5	170	19	22	17	40	1.91
13997745--13997849	5	20.4	5	74	17	83	36	3	2	57	1.32
13997729--13997900	18	10.1	17	78	9	131	34	8	1	55	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13997747--13997900	3	52.3	3	76	15	108	34	7	1	56	1.38
13997758--13997799	8	5.9	7	83	10	50	35	0	2	61	1.09
13997747--13997900	48	3.0	53	72	23	139	34	7	1	56	1.38
13998664--13998709	13	3.6	13	80	13	51	15	4	2	78	1.01
13998669--13998743	29	2.6	28	81	12	89	21	1	2	74	1.01
13998676--13998743	28	2.3	29	82	12	86	23	0	2	73	0.97
13998682--13998762	22	3.8	21	77	16	69	22	1	2	74	1.01
14003918--14003974	24	2.2	27	81	12	66	22	19	12	45	1.83
14006465--14006541	21	3.7	20	80	13	68	81	0	12	5	0.84
14006466--14006542	28	2.8	28	82	4	93	81	0	12	5	0.84
14007196--14007358	63	2.6	63	79	1	166	34	12	25	27	1.92
14007698--14007778	21	3.8	22	93	4	139	35	6	19	38	1.77
14008290--14008519	44	5.4	42	77	10	207	25	12	17	43	1.85
14008286--14008538	84	3.0	84	82	4	303	26	13	17	42	1.86
14008286--14008507	40	5.3	41	77	11	191	25	13	18	43	1.86
14009503--14009557	18	3.1	18	81	0	56	14	0	7	78	0.96
14026705--14026771	28	2.4	29	78	9	77	40	4	0	55	1.20
14028702--14028892	94	2.0	94	95	0	346	30	12	22	34	1.91
14031498--14031542	22	2.0	22	82	0	54	51	0	0	48	1.00
14031858--14031907	20	2.5	19	80	6	55	44	0	0	56	0.99
14031870--14031911	21	2.0	21	86	9	59	52	0	0	47	1.00
14032165--14032207	19	2.3	19	87	0	59	39	2	2	55	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14038182--14038226	22	2.0	22	82	0	54	51	0	0	48	1.00
14038541--14038590	20	2.5	19	80	6	55	44	0	0	56	0.99
14038553--14038594	21	2.0	21	86	9	59	52	0	0	47	1.00
14038797--14038889	19	4.8	19	73	8	62	41	2	4	51	1.33
14042664--14042688	7	3.6	7	100	0	50	0	0	12	88	0.53
14048898--14048935	18	2.1	19	85	9	53	63	5	0	31	1.17
14054369--14054410	22	2.0	22	85	4	59	40	9	0	50	1.35
14054369--14054438	23	3.0	22	76	14	52	42	5	1	50	1.35
14054386--14054438	23	2.2	25	80	6	65	43	1	1	52	1.23
14054398--14054543	41	3.5	39	76	14	114	40	2	1	55	1.23
14054489--14054534	23	2.0	24	91	4	76	41	6	0	52	1.27
14055299--14055357	28	2.1	27	87	9	84	64	3	1	30	1.20
14055514--14055571	22	2.7	21	76	12	55	55	1	3	39	1.27
14055507--14055581	23	3.4	21	73	14	62	56	1	2	40	1.22
14056350--14056389	14	2.8	14	85	14	55	25	5	0	70	1.08
14056771--14056795	4	6.2	4	100	0	50	72	0	0	28	0.86
14058173--14058222	26	1.9	26	88	8	75	34	12	8	46	1.70
14064075--14064129	3	18.7	3	96	3	103	30	0	0	69	0.89
14064263--14064313	20	2.5	20	76	20	52	19	7	1	70	1.21
14066391--14066433	19	2.3	19	84	4	52	41	11	13	32	1.81
14068269--14068303	18	2.0	17	88	5	52	54	5	8	31	1.54
14069307--14069344	18	2.1	19	85	5	51	52	13	10	23	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14070188--14070238	3	17.3	3	95	4	95	66	0	0	33	0.92
14071617--14071670	21	2.4	23	82	14	69	53	0	0	46	1.00
14073738--14073776	16	2.4	17	82	4	53	56	0	0	43	0.99
14074649--14074702	23	2.3	23	77	3	54	48	1	11	38	1.50
14076219--14076256	20	1.9	20	89	10	60	52	2	0	44	1.14
14076244--14076280	17	2.2	16	90	4	56	70	2	2	24	1.14
14076332--14076456	9	13.3	9	69	16	67	59	4	1	35	1.26
14076332--14076473	19	7.6	18	70	23	71	59	3	2	34	1.26
14076385--14076409	12	2.1	12	100	0	50	68	0	0	32	0.90
14076381--14076443	19	3.2	19	78	13	74	68	1	1	28	1.08
14077381--14077416	17	2.1	17	89	0	54	52	0	2	44	1.15
14077441--14077488	23	2.0	24	88	4	71	60	0	2	37	1.09
14086111--14086172	20	3.0	21	79	11	67	43	1	0	54	1.09
14086091--14086157	19	3.2	21	76	14	59	37	0	2	59	1.13
14087329--14087402	25	3.0	24	86	7	94	81	10	1	6	0.94
14087343--14087421	20	3.9	19	79	11	68	82	10	3	3	0.92
14087326--14087397	32	2.2	32	87	7	101	77	12	1	8	1.04
14088406--14088448	22	1.9	23	85	4	61	41	0	9	48	1.35
14100011--14100091	1	81.0	1	86	0	108	92	0	2	4	0.45
14101127--14102180	35	29.6	35	68	14	480	21	22	12	43	1.86
14101129--14102180	73	14.7	73	84	7	1236	21	22	12	43	1.86
14101764--14101876	34	3.2	34	72	14	93	26	26	7	38	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14101130--14102180	145	7.4	145	83	7	1167	21	22	12	43	1.86
14103401--14103443	22	1.9	23	85	4	61	44	0	6	48	1.29
14104856--14104886	16	1.9	16	100	0	62	35	0	19	45	1.51
14104983--14105038	27	2.1	27	82	0	67	33	3	16	46	1.64
14105016--14105057	22	1.9	22	85	9	59	28	2	16	52	1.56
14106546--14106577	16	2.1	16	88	11	50	53	0	0	46	1.00
14106518--14106579	32	2.0	30	81	6	70	54	1	0	43	1.09
14106933--14106995	26	2.3	27	83	8	74	49	11	0	39	1.38
14106945--14106995	26	1.9	27	88	4	77	50	11	0	37	1.39
14107395--14107444	16	3.0	16	88	5	64	30	0	0	70	0.88
14107468--14107501	17	2.1	17	88	5	52	41	0	2	55	1.15
14107797--14107835	17	2.4	17	91	4	62	58	0	0	41	0.98
14108835--14108871	18	2.1	18	89	0	56	75	2	0	21	0.92
14108914--14108964	26	2.0	26	85	7	70	49	3	3	43	1.39
14112131--14112191	23	2.5	24	79	12	63	21	6	24	47	1.74
14112131--14112198	16	4.3	16	78	10	68	22	5	23	48	1.72
14117543--14117588	23	1.9	25	86	8	69	56	17	10	15	1.67
14119277--14119390	34	3.3	34	69	19	83	50	14	18	16	1.77
14120704--14120819	22	5.2	22	73	8	81	31	17	21	30	1.96
14120718--14120827	23	4.9	23	77	3	89	30	18	22	29	1.97
14120719--14120840	45	2.7	45	83	1	147	30	18	22	28	1.97
14120719--14120869	22	6.8	22	75	5	97	28	19	23	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14125560--14125638	39	2.0	40	87	5	115	36	8	17	36	1.81
14128076--14128136	16	3.8	16	75	2	50	18	4	27	49	1.68
14128243--14128370	8	16.4	8	68	13	61	17	1	29	51	1.54
14128305--14128481	15	11.8	15	66	19	84	22	1	24	51	1.57
14128297--14128384	46	1.9	46	88	4	133	17	1	27	54	1.50
14128374--14128473	8	12.5	8	68	12	62	25	3	21	51	1.62
14128359--14128465	24	4.5	24	77	9	87	24	2	20	52	1.60
14133994--14134077	32	2.6	34	83	9	104	46	1	1	51	1.16
14134920--14134966	23	2.0	23	84	8	60	21	38	6	34	1.79
14138056--14138080	2	12.5	2	100	0	50	48	0	0	52	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121