genome.fa.s79.2.7.7.80.10.50.1000.90.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167904.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_17, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  21107920

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   

This is table  90  of  121  ( 14423 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15226066--15226150	40	2.1	40	84	6	109	77	2	5	14	1.05
15228927--15228959	15	2.3	15	89	5	50	24	6	6	63	1.40
15230667--15230704	16	2.2	18	86	9	53	57	10	5	26	1.53
15232759--15232824	28	2.4	26	85	7	78	39	7	9	43	1.65
15232870--15232917	12	4.0	12	77	0	51	27	8	8	56	1.57
15233028--15233084	23	2.5	24	85	5	82	31	0	12	56	1.36
15241469--15241733	125	2.1	126	80	6	306	38	14	13	32	1.86
15245033--15245103	28	2.5	28	88	0	115	47	28	2	21	1.64
15257035--15257089	20	2.7	19	75	10	56	40	1	12	45	1.53
15257009--15257089	40	2.0	40	85	4	110	44	3	11	40	1.58
15257009--15257081	20	3.7	20	78	7	76	47	4	8	39	1.52
15257140--15257193	19	2.9	17	77	17	54	57	9	5	27	1.52
15257204--15257245	20	2.2	19	87	8	59	52	4	4	38	1.44
15259999--15260058	3	20.0	3	78	0	57	28	28	3	40	1.72
15260009--15260058	15	3.3	15	82	0	64	28	30	2	40	1.68
15263908--15264584	335	2.0	339	90	1	1076	48	11	3	36	1.56
15266211--15266342	59	2.2	59	84	5	160	17	3	23	56	1.55
15266430--15266490	23	2.7	22	82	14	72	22	0	11	65	1.24
15266430--15266499	23	3.2	20	75	18	61	25	0	11	62	1.28
15269561--15269589	15	1.9	15	100	0	58	20	0	31	48	1.50
15269564--15269635	25	2.6	26	80	14	74	22	2	27	47	1.65
15269579--15269638	30	1.9	32	90	6	97	23	3	25	48	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15269719--15269756	19	2.0	20	89	5	60	42	2	5	50	1.39
15269814--15269881	21	3.3	21	81	4	84	35	8	7	48	1.62
15269801--15269881	41	2.0	41	90	0	126	35	8	7	48	1.62
15269801--15269881	21	4.0	20	79	7	83	35	8	7	48	1.62
15270363--15270467	45	2.4	45	76	19	121	51	0	0	47	1.07
15270393--15270430	11	3.5	11	82	13	51	47	0	2	50	1.15
15270421--15270461	20	2.0	22	85	9	59	51	0	0	48	1.00
15272470--15272513	13	3.5	13	84	9	56	50	0	0	50	1.00
15274345--15274433	30	2.9	30	81	5	99	13	22	19	44	1.85
15274715--15274779	33	2.0	32	84	3	85	55	6	0	38	1.25
15274769--15274801	17	2.0	17	88	5	50	45	3	0	51	1.16
15279398--15279451	16	3.1	16	73	19	54	44	12	5	37	1.66
15279376--15279451	36	2.0	36	82	10	89	48	11	3	35	1.58
15279397--15279491	40	2.5	35	74	19	84	48	12	5	33	1.64
15279494--15279542	24	2.1	23	88	3	71	59	12	0	28	1.34
15279567--15279604	19	2.0	19	89	0	58	55	7	7	28	1.57
15279741--15279802	30	2.2	27	85	8	79	40	9	6	43	1.63
15280796--15280844	23	2.0	24	84	7	64	14	12	2	71	1.23
15280860--15280944	6	14.7	6	73	11	70	67	7	2	23	1.28
15280863--15280944	29	2.9	28	80	12	78	65	7	2	24	1.30
15281232--15281300	33	2.1	33	86	2	95	42	18	13	26	1.87
15281261--15281360	43	2.3	43	91	1	157	43	19	9	29	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15288718--15289182	158	2.9	159	92	3	837	40	17	13	28	1.88
15289192--15289227	1	36.0	1	91	0	54	94	2	0	2	0.37
15289153--15289227	28	2.8	27	78	7	82	82	6	1	9	0.89
15289153--15289226	13	5.8	13	80	10	82	82	6	1	9	0.90
15289153--15289227	12	5.6	14	77	11	70	82	6	1	9	0.89
15289346--15289381	12	3.0	12	95	0	63	8	33	44	13	1.74
15289630--15289670	20	2.0	20	95	0	73	4	21	31	41	1.74
15289634--15289678	20	2.2	20	84	0	54	11	22	33	33	1.89
15289683--15289741	31	1.9	31	96	0	109	23	23	28	23	1.99
15290080--15290112	11	2.9	11	95	4	57	81	0	0	18	0.68
15290335--15290364	5	5.8	5	92	7	51	83	0	0	16	0.65
15290411--15290469	20	3.0	20	94	0	100	22	28	30	18	1.97
15295087--15295162	20	3.8	20	72	10	66	47	14	5	32	1.67
15295170--15295249	24	3.0	25	78	15	74	56	13	0	30	1.38
15295237--15295304	24	3.0	23	75	18	72	52	10	5	30	1.59
15295433--15295500	27	2.5	27	85	4	84	42	8	7	41	1.64
15297555--15297592	17	2.3	17	86	4	51	26	5	10	57	1.53
15304556--15304802	23	11.1	22	71	15	127	34	4	16	44	1.68
15304556--15304795	21	10.8	21	69	17	114	34	4	16	44	1.68
15304472--15304697	45	5.1	45	71	12	114	35	4	15	43	1.68
15304473--15304798	135	2.5	133	84	6	421	34	4	16	43	1.69
15304997--15305069	18	4.1	18	74	13	60	45	8	6	39	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15307855--15307911	7	7.9	7	90	5	87	84	1	3	10	0.82
15309051--15309274	112	2.0	112	93	3	389	41	12	14	32	1.82
15317633--15317671	3	13.0	3	100	0	78	33	0	0	66	0.92
15320739--15320782	12	3.5	12	84	9	52	43	0	6	50	1.29
15323145--15323177	17	1.9	17	100	0	66	48	18	24	9	1.76
15325533--15325569	10	3.7	10	92	0	56	29	8	13	48	1.71
15335827--15335869	20	2.2	20	83	8	52	37	6	2	53	1.41
15336362--15336406	23	2.0	23	100	0	90	53	4	8	33	1.52
15337445--15337520	34	2.2	34	83	0	98	38	14	13	34	1.85
15344310--15344409	44	2.2	44	89	1	146	50	10	25	15	1.74
15352711--15352757	22	2.3	19	80	20	51	59	0	0	40	0.97
15353374--15353447	20	4.0	20	69	25	63	43	12	4	40	1.61
15359104--15359153	19	2.7	19	70	14	50	56	0	2	42	1.11
15360624--15360668	22	2.0	22	100	0	90	37	4	13	44	1.64
15367749--15367789	17	2.5	17	77	18	50	29	2	0	68	1.03
15370700--15370921	111	2.0	111	93	1	383	40	12	14	32	1.84
15381601--15381639	12	3.0	13	82	14	53	43	0	7	48	1.31
15384025--15384058	17	2.0	17	88	0	50	47	17	23	11	1.81
15386064--15386106	20	2.0	21	86	13	61	58	4	0	37	1.19
15386560--15386592	16	2.1	16	94	0	57	33	0	30	36	1.58
15387382--15387429	23	2.1	23	96	0	87	52	4	10	33	1.55
15390509--15390553	19	2.4	18	78	10	54	68	0	17	13	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15391174--15391401	124	1.8	125	82	6	293	36	14	13	35	1.86
15390994--15391385	184	2.1	185	82	7	443	38	13	14	33	1.85
15391218--15391435	62	3.5	62	70	10	174	35	13	15	35	1.87
15419948--15420126	90	2.0	90	86	4	254	42	11	14	31	1.81
15422522--15422563	18	2.3	19	79	4	50	61	11	0	26	1.30
15424147--15424181	15	2.2	16	90	5	54	57	0	0	42	0.99
15424945--15424970	13	2.0	13	100	0	52	15	23	38	23	1.92
15426813--15426864	25	2.0	25	85	14	70	26	9	0	63	1.25
15429116--15429141	12	2.2	12	100	0	52	53	0	0	46	1.00
15429130--15429188	28	2.0	28	87	6	82	50	1	0	47	1.11
15430373--15430428	22	2.6	22	81	13	55	48	0	3	48	1.19
15440236--15440291	19	2.8	21	71	17	57	75	3	1	19	1.05
15441320--15441373	19	2.7	20	77	11	56	40	11	12	35	1.79
15441436--15441527	17	5.2	18	77	6	80	48	13	9	28	1.73
15441436--15441565	18	7.2	18	76	8	95	47	12	11	28	1.76
15441485--15441647	55	3.0	53	80	9	186	48	9	12	29	1.73
15441485--15441639	19	8.4	19	73	14	110	48	10	12	29	1.73
15441522--15441677	28	5.6	28	77	12	137	46	8	12	32	1.72
15441522--15441646	28	4.5	28	83	8	143	48	8	12	30	1.72
15441605--15441675	26	2.6	27	82	10	83	45	7	12	35	1.70
15441495--15441691	8	22.1	8	67	23	76	47	9	12	30	1.72
15441740--15441796	26	2.2	27	81	12	66	42	10	14	33	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15441783--15441892	42	2.5	43	81	8	125	42	17	10	29	1.83
15442154--15442206	21	2.5	21	87	0	70	43	15	13	28	1.84
15442696--15442754	15	4.1	15	74	12	61	42	8	20	28	1.81
15443563--15443617	16	3.2	19	70	19	57	12	16	0	70	1.16
15444654--15444680	2	13.5	2	100	0	54	51	0	0	48	1.00
15446625--15446688	29	2.2	29	94	2	112	45	7	14	32	1.73
15450207--15450239	11	3.1	11	86	4	50	12	0	15	72	1.12
15455306--15455332	4	6.8	4	100	0	54	22	0	0	77	0.76
15463703--15463736	18	1.9	18	88	5	52	47	0	0	52	1.00
15463672--15463736	18	3.5	17	73	20	51	49	1	1	47	1.20

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121