genome.fa.s79.2.7.7.80.10.50.1000.114.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167904.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_17, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  21107920

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   

This is table  114  of  121  ( 14423 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19547624--19547715	18	5.4	16	70	19	60	54	11	3	30	1.53
19547855--19547916	24	2.6	24	78	0	70	61	8	1	29	1.34
19547938--19548053	20	5.8	20	81	9	148	48	12	5	33	1.64
19547942--19548053	38	2.8	40	85	9	149	49	12	4	33	1.61
19547938--19548056	41	3.0	40	85	8	163	47	12	5	34	1.63
19548067--19548125	29	2.1	28	84	9	75	59	6	5	28	1.45
19548198--19548267	22	3.2	22	84	8	81	72	14	2	10	1.21
19548298--19548335	16	2.4	16	86	4	51	78	7	2	10	1.04
19548574--19548615	19	2.2	20	87	12	61	64	11	2	21	1.38
19549358--19549450	6	15.3	6	82	6	89	66	6	1	25	1.22
19549376--19549439	19	3.4	18	80	6	74	70	7	0	21	1.12
19550261--19550344	20	4.2	20	95	1	143	29	11	14	44	1.81
19550262--19550344	13	6.3	13	71	8	53	28	12	14	44	1.81
19553225--19553269	22	2.0	22	95	0	81	40	17	4	37	1.70
19554383--19554431	15	3.2	15	77	5	53	22	0	0	77	0.77
19555448--19555502	19	2.9	19	76	12	60	83	1	7	7	0.87
19555959--19555994	3	12.3	3	94	5	65	69	0	0	30	0.89
19567433--19567620	42	4.5	42	88	3	245	24	10	19	45	1.81
19568266--19568306	21	2.0	21	85	4	57	9	14	24	51	1.72
19568693--19568719	10	2.7	10	100	0	54	0	0	7	92	0.38
19568764--19569138	201	1.9	202	80	10	455	46	8	10	35	1.68
19575519--19575667	57	2.6	57	89	3	217	35	14	5	44	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19575454--19575699	57	4.1	57	75	13	201	36	12	4	46	1.62
19575683--19575715	15	2.1	16	94	5	59	36	0	3	60	1.12
19575608--19575763	73	2.2	73	81	9	185	35	9	3	51	1.51
19575688--19576068	60	6.5	59	77	10	338	34	12	6	46	1.66
19575455--19575916	250	1.8	255	81	8	575	35	12	5	46	1.65
19577180--19577389	44	4.8	44	85	3	253	48	18	11	21	1.79
19577145--19577389	88	2.9	87	82	7	261	48	18	11	21	1.79
19578406--19578435	8	3.6	8	95	4	51	3	10	0	86	0.67
19582553--19582739	93	2.0	93	82	6	227	26	21	24	27	1.99
19585415--19585487	36	2.0	36	89	0	110	45	19	5	30	1.73
19586343--19586552	105	2.0	105	89	1	323	24	41	13	20	1.88
19588748--19588777	15	2.1	15	93	6	53	70	3	6	20	1.25
19588969--19589012	12	3.6	12	82	14	54	45	0	0	54	0.99
19588975--19589016	14	3.2	13	83	12	50	40	0	0	59	0.97
19588975--19589024	26	1.9	26	84	8	66	42	2	0	56	1.11
19597863--19597898	15	2.4	15	90	0	54	47	0	5	47	1.25
19598237--19598283	22	2.1	23	88	4	69	48	2	4	44	1.34
19601573--19601630	18	3.0	19	75	10	55	58	3	0	37	1.15
19601587--19601662	32	2.4	31	82	8	89	55	2	0	42	1.14
19603073--19603158	11	8.6	10	72	19	56	32	1	1	65	1.08
19603124--19603168	22	2.0	22	83	8	56	31	2	2	64	1.18
19605009--19605033	12	2.1	12	100	0	50	56	0	0	44	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19605403--19605458	29	1.9	29	85	7	78	42	0	7	50	1.30
19605603--19605685	41	2.0	41	88	0	121	39	4	6	49	1.49
19608398--19608445	26	1.9	25	87	8	71	54	6	2	37	1.38
19609080--19609126	3	15.7	3	100	0	94	31	0	0	68	0.90
19609448--19609656	34	6.2	34	73	10	106	33	15	18	33	1.92
19609543--19609655	33	3.3	33	78	11	138	35	15	17	31	1.91
19615669--19615714	3	15.3	3	100	0	92	34	0	0	65	0.93
19615714--19615753	21	1.9	21	90	10	64	65	7	5	22	1.38
19618153--19618195	19	2.2	19	83	4	50	25	2	4	67	1.22
19621181--19621260	41	2.0	41	85	5	108	42	5	6	46	1.51
19624583--19624621	20	2.1	18	85	9	51	48	0	0	51	1.00
19624787--19624839	26	2.0	26	88	0	79	32	7	11	49	1.67
19625400--19625450	26	2.0	26	88	0	75	45	3	3	47	1.40
19639098--19639131	12	2.8	12	90	0	50	41	2	0	55	1.15
19640131--19640182	23	2.2	24	86	6	72	61	0	0	38	0.96
19640499--19640571	35	2.1	35	92	0	119	43	13	6	35	1.71
19640839--19640893	24	2.3	25	78	12	62	38	0	0	61	0.96
19640859--19640896	6	6.2	6	85	14	51	31	0	0	68	0.90
19640864--19640901	7	5.6	7	87	12	53	28	2	0	68	1.03
19640864--19640896	13	2.5	13	100	0	66	30	0	0	69	0.88
19641682--19641739	20	3.0	20	78	12	66	46	3	1	48	1.29
19641748--19641792	24	1.9	23	95	4	81	68	0	0	31	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19641759--19641807	20	2.5	20	83	6	64	63	0	0	36	0.95
19642819--19642870	23	2.3	23	80	16	63	26	0	0	73	0.84
19642863--19642907	20	2.2	20	96	0	81	48	0	0	51	1.00
19644510--19644543	12	2.8	12	90	0	50	0	8	17	73	1.08
19651990--19652031	3	14.0	3	100	0	84	66	0	0	33	0.92
19654530--19654588	26	2.3	26	85	5	75	37	1	0	61	1.07
19655625--19655662	12	3.2	12	92	3	60	15	7	2	73	1.17
19656794--19656819	3	8.7	3	100	0	52	0	34	34	30	1.58
19657028--19657104	36	2.1	36	92	4	129	31	14	12	41	1.83
19665371--19665593	110	2.0	110	94	0	392	20	24	11	44	1.84
19671366--19671429	13	4.5	14	73	13	51	57	0	1	40	1.08
19674875--19675321	222	2.0	222	93	0	770	21	13	29	35	1.92
19679863--19679911	18	2.7	18	81	12	55	61	0	2	36	1.08
19686787--19686864	29	2.6	29	79	4	84	65	1	3	29	1.18
19686765--19686848	36	2.3	38	84	10	104	61	0	1	36	1.04
19686807--19686831	13	1.9	13	100	0	50	56	0	0	44	0.99
19701838--19701882	21	2.0	23	83	8	58	40	4	6	48	1.49
19703114--19703141	2	14.0	2	100	0	56	50	0	0	50	1.00
19707686--19707723	20	1.9	20	88	0	58	7	7	0	84	0.79
19707689--19707736	18	2.7	17	84	12	69	4	12	0	83	0.79
19711766--19711798	16	2.1	16	94	0	57	42	0	15	42	1.46
19722298--19722328	12	2.6	12	94	0	53	35	22	16	25	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19723589--19723958	50	7.8	50	77	11	325	28	11	20	39	1.88
19723780--19723958	51	3.7	50	85	7	228	26	12	22	39	1.89
19723887--19724122	44	5.4	44	85	2	314	27	12	18	41	1.86
19723835--19724122	132	2.1	133	83	8	343	27	12	18	41	1.87
19729031--19729104	36	2.1	36	94	0	130	27	10	32	29	1.90
19729591--19729695	28	3.8	28	90	0	165	20	0	33	44	1.58
19732102--19732263	59	2.7	59	90	5	256	38	11	4	44	1.63
19732107--19732286	59	3.1	58	88	7	251	40	10	4	45	1.59
19733189--19733282	24	4.1	24	82	12	108	59	0	5	35	1.20
19733493--19733684	41	4.6	41	81	8	190	37	21	16	24	1.93
19733661--19733708	24	2.0	24	100	0	96	25	33	16	25	1.96
19733620--19733749	65	2.0	66	92	4	219	30	23	17	27	1.97
19733538--19733832	148	2.0	148	87	2	432	34	21	16	27	1.94
19733685--19733838	41	3.7	42	86	2	222	34	20	15	29	1.94
19733688--19733839	83	1.8	82	91	1	250	34	20	15	28	1.94
19734868--19734923	10	5.4	10	81	8	67	8	16	0	75	1.05
19734875--19734921	22	2.1	22	92	0	76	10	14	0	74	1.07
19736604--19736641	20	1.9	20	100	0	76	21	34	0	44	1.52
19745429--19745580	59	2.6	59	88	5	213	39	9	6	44	1.62
19746497--19746591	24	3.9	24	74	10	86	60	0	6	33	1.22
19751127--19751349	115	1.9	115	97	0	419	46	17	11	25	1.81
19764459--19764603	43	3.3	43	76	12	134	43	12	15	28	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19764459--19764603	44	3.3	43	76	8	141	43	12	15	28	1.83
19764979--19765066	35	2.6	34	78	7	97	26	11	18	44	1.83
19765191--19765223	11	3.1	11	86	8	50	78	3	9	9	1.05
19765978--19766020	22	1.9	22	85	4	59	18	0	9	72	1.11
19766075--19766121	17	2.6	19	77	16	55	70	2	8	19	1.24
19766115--19766160	22	2.1	22	83	0	56	73	2	0	23	0.94
19766418--19766450	11	3.1	11	91	4	50	75	6	0	18	1.00
19766432--19766469	3	13.0	3	86	5	51	73	0	0	26	0.83
19766422--19766469	15	3.2	15	88	8	71	72	2	0	25	0.95
19778377--19778454	40	2.0	40	81	0	93	26	7	19	46	1.77

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121