genome.fa.s79.2.7.7.80.10.50.1000.25.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167904.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_17, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  21107920

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   

This is table  25  of  121  ( 14423 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4383901--4384421	145	3.5	146	77	12	450	47	32	1	18	1.57
4383922--4384319	14	27.3	15	65	14	120	47	32	1	17	1.56
4384034--4384171	21	6.3	22	70	13	88	48	35	0	15	1.46
4384060--4384171	7	15.4	7	70	10	64	50	35	0	14	1.43
4383922--4384230	87	3.5	85	83	9	333	48	33	1	16	1.55
4383989--4384289	74	4.1	72	74	9	218	48	32	1	17	1.57
4384192--4384404	29	7.3	30	78	12	178	47	31	1	19	1.60
4384213--4384434	58	3.8	60	76	12	194	46	31	2	20	1.63
4384052--4384365	161	2.0	161	81	6	377	47	32	1	18	1.58
4384249--4384447	87	2.3	88	77	11	203	45	33	1	20	1.60
4385681--4385712	2	16.0	2	93	0	55	46	0	0	53	1.00
4389075--4389130	25	2.0	30	83	16	77	50	5	5	39	1.48
4388920--4389244	161	2.0	161	98	0	632	34	6	8	50	1.58
4393290--4393323	13	2.6	14	86	13	54	38	0	0	61	0.96
4394890--4394936	24	2.0	23	83	4	58	14	6	8	70	1.32
4395237--4396007	50	15.6	50	81	6	781	37	21	12	29	1.89
4395237--4396007	99	7.8	98	82	6	817	37	21	12	29	1.89
4409214--4409306	17	5.5	17	82	10	93	12	1	4	81	0.88
4409214--4409309	10	8.9	10	72	15	66	13	1	4	81	0.89
4409215--4409277	25	2.5	25	87	12	94	11	1	1	85	0.73
4409215--4409277	24	2.5	26	87	7	94	11	1	1	85	0.73
4409214--4409275	31	2.0	32	90	3	99	11	1	1	85	0.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4409214--4409292	25	3.2	24	82	7	86	11	1	3	83	0.83
4409234--4409315	24	3.7	23	74	23	70	14	0	6	79	0.92
4409448--4409492	23	1.9	24	86	4	65	44	13	2	40	1.56
4412355--4412404	25	2.0	25	100	0	100	32	16	12	40	1.84
4412586--4412631	9	4.8	10	76	10	51	23	2	0	73	0.94
4412588--4412631	19	2.3	19	96	0	79	20	2	0	77	0.88
4412704--4412756	26	2.0	26	82	7	63	39	15	5	39	1.70
4412877--4412914	18	2.1	19	85	5	51	78	2	0	18	0.86
4413161--4413205	23	2.0	23	86	0	63	0	42	0	57	0.98
4413870--4413912	21	2.0	21	86	0	59	67	0	0	32	0.91
4417278--4417302	8	3.1	8	100	0	50	36	12	12	40	1.79
4417484--4417516	16	2.0	17	94	5	59	42	0	6	51	1.26
4417533--4417562	2	15.0	2	92	0	51	46	0	3	50	1.18
4418607--4418647	17	2.3	19	91	8	68	31	0	0	68	0.90
4419613--4419644	15	2.3	15	89	10	50	0	0	18	81	0.70
4419922--4419973	7	7.6	7	76	20	56	11	0	13	75	1.06
4419920--4419974	16	3.3	16	92	7	92	10	0	12	76	1.02
4419918--4419974	18	3.3	18	85	9	91	10	0	12	77	1.00
4419913--4419997	34	2.6	32	83	12	102	14	0	10	75	1.05
4420295--4420696	49	8.2	50	80	9	402	38	20	12	28	1.89
4420295--4420696	147	2.7	146	83	7	476	38	20	12	28	1.89
4420643--4420994	178	2.0	178	96	0	650	31	13	10	44	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4433966--4433990	9	2.8	9	100	0	50	24	0	0	76	0.80
4434299--4434347	17	2.8	17	85	11	64	67	0	2	30	1.02
4435424--4435456	16	2.0	17	94	5	59	51	6	0	42	1.26
4435639--4435663	8	3.1	8	100	0	50	40	12	12	36	1.79
4436385--4436416	15	2.3	15	89	10	50	0	0	18	81	0.70
4436690--4436752	18	3.7	18	81	10	87	11	0	11	77	0.99
4436698--4436752	16	3.3	16	87	7	83	12	0	10	76	1.02
4436687--4436744	27	2.1	27	83	0	71	10	0	10	79	0.94
4436698--4436775	34	2.4	32	85	12	97	15	0	10	74	1.07
4437072--4437531	49	9.4	50	79	11	400	38	20	12	28	1.89
4437040--4437478	149	3.0	146	78	10	480	38	19	13	28	1.89
4437072--4437531	98	4.7	98	80	7	452	38	20	12	28	1.89
4449551--4449603	12	4.3	12	76	9	54	30	0	0	69	0.88
4449813--4449858	12	4.0	12	83	16	62	39	0	0	60	0.97
4449909--4449975	21	3.2	21	78	18	70	73	2	0	23	0.97
4451571--4451625	16	3.3	16	90	7	83	14	0	9	76	1.02
4451569--4451639	18	4.1	17	78	12	74	15	0	8	76	1.02
4451546--4451624	41	1.9	41	82	5	97	10	1	10	78	1.02
4451556--4451648	34	2.9	32	80	16	95	13	1	8	76	1.07
4454475--4454582	34	3.2	33	78	10	119	47	6	6	39	1.55
4454483--4454655	68	2.6	67	79	8	172	45	5	6	41	1.55
4454614--4454640	14	1.9	14	100	0	54	33	0	7	59	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4462515--4462558	21	2.0	22	86	8	63	29	4	2	63	1.26
4471935--4471999	20	3.3	20	85	4	89	67	6	0	26	1.13
4473037--4473077	3	13.7	3	94	0	73	65	2	0	31	1.05
4473256--4473348	48	2.0	47	82	2	114	48	13	11	25	1.77
4473369--4473543	49	3.6	49	75	6	183	40	16	10	32	1.83
4474074--4474157	42	2.0	42	100	0	168	47	7	21	23	1.75
4474427--4474470	11	4.0	11	93	0	79	0	11	0	88	0.51
4474431--4474471	20	2.0	21	95	4	75	0	12	0	87	0.53
4485617--4485658	11	4.0	11	75	12	52	21	2	0	76	0.90
4485604--4485661	20	3.0	19	80	9	64	22	5	0	72	1.04
4485617--4485661	20	2.3	20	88	3	65	20	2	0	77	0.87
4485678--4485728	3	16.3	3	80	11	50	33	3	1	60	1.26
4489147--4489171	2	12.5	2	100	0	50	52	0	0	48	1.00
4489340--4489385	3	15.3	3	81	0	56	56	0	0	43	0.99
4489340--4489385	12	3.8	12	91	0	74	56	0	0	43	0.99
4490024--4490072	25	2.0	25	84	15	66	65	0	32	2	1.04
4490311--4490341	2	15.5	2	100	0	62	48	0	0	51	1.00
4501891--4502216	46	6.9	46	82	5	357	27	11	23	37	1.89
4501888--4502216	95	3.5	95	82	7	386	27	11	23	37	1.89
4501891--4502217	141	2.3	142	86	2	451	27	11	23	37	1.90
4502221--4502245	10	2.5	10	100	0	50	72	0	0	28	0.86
4502576--4502619	23	2.0	22	90	4	70	36	45	6	11	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4502570--4502617	12	4.1	12	76	15	55	33	47	8	10	1.68
4503906--4503934	12	2.5	12	94	5	51	72	3	0	24	1.00
4506774--4506868	34	2.8	33	82	6	118	45	1	9	44	1.43
4506773--4506888	33	3.4	32	80	11	117	43	2	9	44	1.50
4507177--4507251	33	2.3	32	84	9	89	48	6	4	41	1.48
4515596--4515661	31	2.1	31	100	0	132	42	19	12	25	1.86
4520742--4520775	16	2.3	15	90	10	52	67	0	0	32	0.91
4520825--4520886	27	2.2	28	86	8	83	50	0	0	50	1.00
4520865--4520902	13	2.9	13	84	0	58	63	0	0	36	0.95
4528441--4528505	13	4.7	13	74	20	60	20	1	3	75	1.02
4528440--4528496	30	1.9	30	88	0	87	19	3	3	73	1.12
4529503--4529547	8	5.3	9	79	12	51	80	6	2	11	0.99
4529619--4529678	18	3.3	18	97	0	111	26	13	16	43	1.85
4533444--4533596	80	1.9	81	79	4	175	26	10	18	44	1.82
4533546--4533810	41	6.4	40	77	10	216	27	15	14	42	1.86
4534483--4534520	19	2.0	19	89	0	58	28	7	13	50	1.69
4534518--4534556	7	5.6	7	100	0	78	25	0	12	61	1.31
4541611--4541664	22	2.4	23	81	3	74	50	0	0	50	1.00
4543365--4543410	25	1.9	25	91	8	78	54	4	6	34	1.46
4543561--4543590	2	15.0	2	92	0	51	50	0	3	46	1.18
4543807--4543849	16	2.7	16	74	0	50	53	2	0	44	1.13
4553849--4553921	36	2.0	36	100	0	146	53	10	8	27	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4553849--4553906	20	3.1	20	66	19	61	53	8	10	27	1.64
4553854--4553929	36	2.1	36	92	2	125	53	13	6	26	1.63
4553861--4553937	4	19.2	4	76	5	57	53	14	3	28	1.58
4553907--4553949	8	5.4	8	94	0	59	51	13	0	34	1.42
4560000--4560037	18	2.1	18	90	9	60	5	18	10	65	1.41
4560575--4560610	12	3.0	12	87	0	54	72	0	0	27	0.85
4569509--4569544	2	18.0	2	100	0	72	50	0	0	50	1.00
4582049--4582097	21	2.3	22	79	10	57	34	4	2	59	1.28
4582083--4582115	8	4.1	8	85	14	50	27	0	0	72	0.85
4582992--4583032	18	2.2	19	91	4	66	80	12	7	0	0.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121