genome.fa.s79.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167904.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_17, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  21107920

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   

This is table  7  of  121  ( 14423 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
883726--883768	18	2.2	20	80	8	54	48	0	0	51	1.00
887200--887267	34	2.0	34	91	0	109	35	13	8	42	1.75
892270--892315	24	2.0	23	86	4	65	8	10	10	69	1.37
893803--893858	22	2.6	22	80	11	71	46	0	0	53	1.00
893818--893872	21	2.8	21	72	10	62	49	0	0	50	1.00
893875--893916	18	2.4	18	88	4	59	66	0	0	33	0.92
893946--894006	13	5.1	12	78	9	54	44	4	1	49	1.33
903429--903482	28	2.0	27	81	3	63	53	3	5	37	1.42
907703--907745	22	1.9	23	90	4	70	39	16	23	20	1.92
908127--908165	18	2.1	19	90	4	62	66	7	0	25	1.18
921979--922565	295	2.0	295	95	0	1066	37	18	13	30	1.89
925310--925363	28	2.0	27	92	3	90	62	5	1	29	1.28
937028--937077	23	2.3	22	82	6	57	64	8	2	26	1.32
943890--943914	2	12.5	2	100	0	50	52	0	0	48	1.00
944703--944748	5	9.0	5	81	13	58	41	0	0	58	0.98
944983--945021	20	2.0	20	85	10	53	51	0	5	43	1.24
945047--945087	20	2.0	20	86	9	57	56	2	4	36	1.34
949623--949671	17	2.8	18	81	15	66	51	2	8	38	1.43
950309--950357	23	2.2	23	85	3	64	46	0	0	53	1.00
950324--950368	22	2.0	23	83	12	58	44	0	0	55	0.99
950366--950395	12	2.6	11	90	10	51	26	3	0	70	1.03
950921--950973	14	3.6	16	78	14	60	47	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
953213--953241	2	14.5	2	100	0	58	51	0	0	48	1.00
956547--956580	11	3.1	11	82	0	50	47	0	0	52	1.00
966288--966375	37	2.3	38	85	12	119	35	0	1	63	1.02
977140--977169	15	1.9	16	93	6	53	60	3	0	36	1.14
977526--977564	3	13.0	3	100	0	78	66	0	0	33	0.92
977989--978031	22	2.0	21	82	13	52	46	6	6	39	1.58
978174--978247	22	3.3	22	79	9	78	29	2	1	66	1.14
979708--979752	21	2.1	21	83	0	54	42	0	0	57	0.98
981955--982004	20	2.4	21	80	10	57	40	0	0	60	0.97
993412--993442	7	4.4	7	95	0	53	54	0	0	45	0.99
993729--993776	23	2.0	24	84	11	64	41	10	0	47	1.37
995168--995214	15	3.2	15	84	6	60	14	0	21	63	1.30
995162--995216	25	2.2	25	81	12	69	18	0	18	63	1.31
999848--999895	25	1.9	25	100	0	96	41	8	16	33	1.78
1001357--1001394	20	1.9	20	84	10	51	44	0	0	55	0.99
1003474--1003532	20	2.8	22	76	19	63	40	3	1	54	1.27
1003668--1003698	14	2.1	15	94	5	55	41	0	0	58	0.98
1011859--1011896	16	2.2	18	90	9	62	55	0	7	36	1.29
1011986--1012037	18	2.8	18	70	2	50	55	0	3	40	1.18
1014711--1014764	18	2.9	18	75	5	54	55	1	0	42	1.10
1015004--1015049	2	23.5	2	91	4	76	47	0	2	50	1.13
1015041--1015077	16	2.2	18	85	9	51	48	2	0	48	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1020026--1020058	9	3.8	9	88	4	50	36	12	9	42	1.74
1021363--1021397	15	2.4	14	85	4	52	34	0	8	57	1.29
1021476--1021528	17	3.0	17	80	5	61	41	0	0	58	0.98
1021453--1021633	102	1.8	96	83	9	238	42	3	2	51	1.32
1021800--1021829	14	2.1	15	93	6	53	53	3	0	43	1.17
1025490--1025537	5	9.6	5	82	17	64	37	0	0	62	0.95
1025485--1025546	17	3.6	16	81	14	70	38	0	0	61	0.96
1025418--1025546	27	5.2	26	68	18	87	41	0	0	58	0.98
1025491--1025538	11	4.2	11	89	10	78	35	0	0	64	0.94
1025735--1025794	31	1.9	31	89	0	93	48	3	0	48	1.18
1027862--1027886	2	12.5	2	100	0	50	48	0	0	52	1.00
1034528--1034559	15	2.1	15	94	0	55	75	0	3	21	0.95
1034870--1034967	20	5.0	19	74	16	58	40	0	3	56	1.15
1034900--1034944	23	1.9	24	90	4	74	42	0	0	57	0.98
1034894--1034948	18	2.9	18	74	15	58	45	0	0	54	0.99
1035385--1035437	27	2.0	27	96	0	97	43	5	7	43	1.56
1036562--1036588	8	3.4	8	100	0	54	44	0	0	55	0.99
1038772--1038888	57	2.1	54	83	13	141	53	5	5	35	1.45
1042041--1042086	22	2.0	23	84	12	60	54	0	2	43	1.12
1051513--1051554	19	2.3	19	87	4	59	59	0	2	38	1.10
1054880--1054907	4	7.0	4	100	0	56	75	0	0	25	0.81
1058647--1058679	16	2.0	17	94	5	59	18	9	12	60	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1063470--1063515	17	2.5	18	82	13	58	71	4	0	23	1.03
1065003--1065035	12	2.7	13	86	13	52	30	6	0	63	1.18
1072011--1072048	15	2.5	15	95	0	67	65	13	0	21	1.26
1076984--1077209	111	2.0	111	98	0	434	48	21	8	20	1.76
1078752--1078804	27	2.0	27	81	7	63	43	1	3	50	1.30
1078826--1078878	16	3.4	16	86	5	81	66	0	0	33	0.92
1079094--1079169	31	2.5	31	78	4	82	36	6	3	52	1.46
1083744--1084075	58	5.8	58	84	6	399	34	12	8	44	1.72
1084088--1084170	6	13.7	6	82	15	100	81	0	2	15	0.78
1084088--1084169	19	4.5	18	81	15	98	81	0	2	15	0.79
1084584--1084616	13	2.6	13	90	4	50	78	0	21	0	0.75
1084614--1084858	17	13.3	17	70	18	61	68	1	3	26	1.12
1084648--1084811	41	4.1	42	75	22	133	64	1	3	31	1.16
1084616--1084803	3	58.7	3	70	20	73	66	0	3	29	1.13
1084662--1084834	68	2.4	69	82	12	192	67	1	2	27	1.14
1084607--1084877	68	4.0	68	73	13	190	69	1	3	25	1.14
1084832--1084873	8	5.4	8	94	2	59	78	4	0	16	0.91
1085070--1085350	41	6.7	41	78	11	268	41	18	14	24	1.89
1085070--1085350	82	3.3	82	79	11	311	41	18	14	24	1.89
1086342--1086379	19	2.0	20	89	5	60	2	7	0	89	0.57
1096798--1097068	58	4.7	58	85	2	350	36	12	7	43	1.70
1096797--1097067	57	4.7	58	82	8	313	36	12	7	43	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1096796--1097077	115	2.4	114	83	5	363	36	12	6	44	1.69
1097085--1097116	5	6.8	5	86	13	50	84	0	0	15	0.63
1097080--1097111	13	2.4	13	94	5	55	81	0	3	15	0.82
1097085--1097123	18	2.2	18	95	0	69	82	0	0	17	0.68
1098040--1098164	23	5.3	23	78	8	110	64	0	4	32	1.12
1098062--1098179	3	37.7	3	76	18	84	67	0	2	29	1.03
1098040--1098191	47	3.1	49	83	11	179	65	0	3	30	1.14
1098106--1098253	7	19.7	7	66	22	52	71	2	2	24	1.07
1098054--1098240	23	8.3	22	74	22	131	68	1	3	26	1.11
1098061--1098230	67	2.6	65	79	12	168	69	1	2	27	1.08
1098059--1098224	10	18.1	9	69	25	59	69	1	2	27	1.08
1098108--1098255	54	2.7	55	82	12	155	70	2	2	24	1.10
1098211--1098249	8	4.8	8	87	6	51	76	2	2	17	1.01
1098186--1098253	30	2.3	28	82	14	75	75	2	2	19	1.07
1104294--1104349	28	2.0	28	96	0	103	35	5	3	55	1.40
1104485--1104574	27	3.2	29	81	9	80	58	1	0	40	1.05
1104515--1104561	24	2.0	24	82	0	58	59	0	0	40	0.97
1104511--1104588	27	2.8	28	83	11	90	60	0	0	39	0.97
1104511--1104575	14	4.6	14	76	17	71	61	0	0	38	0.96
1105182--1105244	13	4.8	13	75	21	51	50	0	0	49	1.00
1105181--1105219	13	3.2	12	86	10	53	53	0	0	46	1.00
1105186--1105222	13	2.9	13	92	4	58	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1106242--1106304	27	2.3	27	77	2	72	39	0	1	58	1.07
1107177--1107201	11	2.3	11	100	0	50	20	12	24	44	1.85
1116414--1116449	18	2.0	18	100	0	72	27	33	5	33	1.80
1117567--1117605	11	3.5	11	80	13	53	56	2	2	38	1.27
1117711--1117793	33	2.5	33	84	2	103	34	4	2	57	1.33
1117744--1117810	15	4.9	15	74	23	67	35	5	1	56	1.33
1117761--1117810	21	2.5	19	74	22	57	36	6	0	58	1.23
1119261--1119306	20	2.3	20	85	3	58	63	2	0	34	1.07
1130035--1130067	16	2.2	15	89	10	50	66	3	0	30	1.06
1133920--1133968	22	2.2	22	85	0	62	32	4	2	61	1.26

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121