genome.fa.s79.2.7.7.80.10.50.1000.37.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167904.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_17, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  21107920

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   

This is table  37  of  121  ( 14423 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6567354--6567396	3	14.3	3	95	0	77	62	0	2	34	1.08
6570408--6570451	23	1.9	23	90	9	72	38	31	0	29	1.58
6573163--6573271	53	2.1	53	82	6	132	27	27	10	34	1.89
6573369--6573544	89	2.0	89	84	2	228	31	19	5	44	1.72
6577099--6577220	65	1.9	62	81	6	147	36	12	11	39	1.79
6577418--6577459	12	3.3	12	90	6	57	47	11	0	40	1.40
6582025--6582105	28	2.8	28	83	10	85	67	4	22	4	1.29
6582086--6582121	11	3.2	11	92	4	54	88	2	5	2	0.67
6585161--6586192	291	3.5	290	83	4	1146	38	14	14	33	1.86
6585468--6585626	62	2.5	63	82	9	175	34	17	14	33	1.90
6585159--6586192	292	3.5	291	84	2	1198	38	14	14	33	1.86
6585907--6585950	22	2.0	22	86	0	61	47	4	13	34	1.63
6586062--6586426	189	1.9	186	83	7	470	39	13	13	32	1.84
6593815--6593850	15	2.4	15	95	0	63	13	8	13	63	1.50
6593980--6594026	24	2.0	24	83	8	60	55	0	2	42	1.12
6595185--6595213	3	9.7	3	100	0	58	34	31	0	34	1.58
6595632--6595665	5	6.8	5	87	12	52	82	0	0	17	0.67
6595800--6595850	26	2.0	26	84	0	66	45	3	9	41	1.56
6597302--6597344	11	3.9	11	84	0	50	83	2	9	4	0.87
6598982--6599020	18	2.2	18	95	0	69	51	17	0	30	1.46
6603662--6603788	68	1.9	68	91	3	211	37	7	13	42	1.71
6604615--6604762	55	2.7	55	81	4	174	51	12	6	29	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6604915--6605008	49	1.9	49	82	4	118	40	14	17	27	1.89
6605742--6605848	7	15.3	7	74	7	83	42	39	1	15	1.58
6605742--6605806	21	3.1	21	86	0	94	46	36	0	16	1.48
6605742--6605848	42	2.5	42	84	3	135	42	39	1	15	1.58
6605742--6605862	21	5.9	21	78	3	88	42	39	2	15	1.61
6607471--6607511	21	2.0	21	85	9	57	53	2	0	43	1.13
6607928--6607970	21	2.1	20	82	4	50	41	2	2	53	1.26
6607823--6608079	125	2.0	126	93	2	437	38	4	7	49	1.52
6608037--6608073	18	2.2	18	85	9	51	40	0	5	54	1.24
6608393--6608444	16	3.2	16	72	0	50	76	7	7	7	1.15
6615678--6615709	16	2.0	16	93	0	55	71	18	0	9	1.12
6616137--6616186	11	4.5	12	85	12	63	84	0	16	0	0.63
6616138--6616186	16	3.0	16	87	3	71	83	0	16	0	0.64
6616137--6616175	6	6.8	6	82	11	55	84	0	15	0	0.62
6616136--6616182	25	1.9	25	91	4	78	85	0	14	0	0.61
6616716--6616791	34	2.3	34	84	6	93	46	15	9	28	1.77
6616716--6616819	35	3.1	33	80	8	93	44	17	10	27	1.82
6616984--6617129	34	4.3	34	73	6	100	41	14	13	30	1.85
6617226--6617342	33	3.5	33	80	0	135	41	20	8	29	1.82
6619541--6619737	99	2.0	98	86	3	270	35	10	17	37	1.84
6619981--6620031	15	3.4	14	77	20	50	70	0	3	25	1.04
6620293--6620337	13	3.5	13	81	6	56	57	22	4	15	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6620366--6620423	26	2.2	27	84	3	73	44	24	8	22	1.80
6620621--6620656	18	2.0	18	89	10	56	66	0	2	30	1.06
6626123--6626177	16	3.4	16	77	7	58	83	3	9	3	0.88
6626123--6626187	10	6.8	9	76	11	58	83	4	9	3	0.90
6626114--6626188	20	3.7	20	79	10	73	82	4	9	4	0.92
6626123--6626187	29	2.2	28	89	10	96	83	4	9	3	0.90
6626114--6626189	29	2.5	30	83	14	95	81	3	9	5	0.96
6627627--6627700	32	2.3	32	77	11	80	35	21	13	29	1.92
6627754--6627794	21	2.0	21	85	0	55	36	19	21	21	1.95
6628005--6628078	32	2.3	32	80	2	85	33	17	16	32	1.92
6628031--6628272	131	1.8	131	80	10	289	37	17	14	30	1.90
6628407--6628488	33	2.6	32	84	5	103	42	18	8	30	1.80
6628413--6628503	32	2.8	33	78	8	96	41	18	8	30	1.81
6628537--6628602	23	2.9	23	78	10	82	28	18	24	28	1.98
6628537--6628637	46	2.3	45	82	5	116	29	16	24	28	1.97
6628760--6628819	14	4.1	14	81	14	68	81	1	6	10	0.93
6628760--6628819	24	2.7	21	85	12	68	81	1	6	10	0.93
6628774--6628824	6	8.7	6	79	12	52	84	1	3	9	0.83
6631125--6631166	22	1.9	22	100	0	84	19	23	4	52	1.65
6633044--6633531	244	2.0	244	88	0	717	27	19	12	40	1.87
6633755--6633817	32	2.0	32	81	12	76	4	11	1	82	0.88
6633755--6633818	24	2.7	23	81	13	67	6	10	1	81	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6644823--6644859	19	1.9	19	88	0	56	16	27	16	40	1.89
6646122--6646160	18	2.2	18	86	4	53	43	10	10	35	1.73
6646613--6646648	18	2.0	18	94	0	63	19	5	36	38	1.75
6647491--6647515	13	1.9	13	100	0	50	80	4	8	8	1.03
6649021--6649053	7	4.9	7	88	7	50	3	0	6	90	0.52
6649021--6649055	13	2.6	13	95	4	61	2	0	5	91	0.50
6649063--6649324	49	5.3	50	75	6	223	34	12	17	35	1.88
6649063--6649324	98	2.7	99	76	9	266	34	12	17	35	1.88
6649351--6649459	50	2.2	49	83	1	146	47	11	13	27	1.77
6649360--6649455	50	1.9	50	89	2	149	50	10	10	29	1.70
6650065--6650108	19	2.3	19	81	14	54	13	27	2	56	1.49
6650380--6650464	31	2.7	31	85	0	107	28	18	17	35	1.94
6650259--6650466	62	3.3	62	72	6	168	28	18	18	35	1.94
6650892--6650939	19	2.5	19	93	6	80	35	18	16	29	1.93
6657563--6657618	17	3.3	17	82	9	62	3	16	0	80	0.85
6660327--6660436	37	2.9	38	76	9	118	31	10	20	38	1.85
6662476--6662596	21	5.6	21	74	13	77	23	0	29	45	1.59
6662476--6662598	7	17.1	7	69	11	61	23	0	30	45	1.59
6662589--6662657	19	3.7	18	81	11	86	13	1	42	43	1.52
6670057--6670093	19	1.9	19	88	0	56	21	18	10	48	1.78
6670655--6670804	71	2.1	71	81	4	169	30	14	18	37	1.90
6671118--6671153	18	1.9	19	88	5	56	19	0	11	69	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6671131--6671172	21	2.0	21	86	9	59	21	0	9	69	1.17
6681901--6681963	33	1.9	33	93	0	108	23	46	1	28	1.62
6683609--6683645	17	2.2	17	90	0	56	35	8	8	48	1.62
6685701--6686075	57	6.6	57	77	2	331	33	26	20	20	1.97
6685752--6686081	114	2.9	114	83	0	401	33	27	19	19	1.96
6699933--6699975	22	2.0	22	100	0	86	27	53	4	13	1.60
6699984--6700178	57	3.4	56	84	4	223	33	25	20	20	1.97
6702381--6702429	25	2.0	24	84	7	64	44	24	0	30	1.54
6711098--6711206	55	2.0	55	88	0	164	33	3	14	47	1.62
6725849--6725913	22	2.8	22	73	15	60	38	23	4	33	1.75
6732080--6732158	6	12.5	6	75	14	70	16	0	34	49	1.46
6732080--6732158	19	4.2	18	81	13	79	16	0	34	49	1.46
6732098--6732161	32	2.0	32	90	0	101	14	0	37	48	1.44
6732174--6732255	42	2.0	42	90	0	128	51	13	10	24	1.73
6733254--6733294	14	2.9	14	89	7	57	70	0	0	29	0.87
6733247--6733294	7	7.3	7	80	15	50	70	0	0	29	0.87
6733242--6733293	10	5.0	10	80	13	52	69	1	0	28	0.99
6747356--6747420	31	2.1	31	85	0	85	35	16	9	38	1.81
6747490--6747557	23	3.3	22	71	26	67	51	13	13	22	1.75
6747501--6747534	16	2.1	16	100	0	68	55	11	11	20	1.67
6751234--6751273	21	1.9	21	85	10	55	42	7	7	42	1.61
6751725--6751799	39	1.9	39	83	0	96	17	6	37	38	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6751753--6751818	26	2.6	25	80	9	71	18	1	39	40	1.60
6753290--6753621	142	2.3	143	77	3	339	42	15	13	28	1.85
6754859--6754916	19	3.1	19	85	9	82	13	20	17	48	1.81
6756065--6756104	18	2.2	18	86	8	55	47	10	5	37	1.59
6756538--6756610	19	3.9	19	80	5	78	20	4	30	45	1.70
6759014--6759384	50	7.5	48	77	10	306	38	14	14	33	1.86
6759017--6759384	99	3.7	99	76	10	312	38	14	14	33	1.86
6759014--6759374	149	2.4	148	78	8	353	37	14	14	33	1.87
6759265--6759374	49	2.2	49	84	9	145	41	14	12	30	1.83
6759341--6759537	50	3.9	50	82	7	238	46	12	14	26	1.81

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121