genome.fa.s79.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167904.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_17, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  21107920

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   

This is table  5  of  121  ( 14423 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
405080--405121	15	2.9	15	85	3	59	2	14	2	80	0.90
405521--405551	13	2.4	13	88	0	53	51	0	6	41	1.27
405522--405555	13	2.5	13	90	4	50	55	0	2	41	1.15
406019--406096	20	3.8	20	72	3	66	55	5	0	39	1.22
406072--406132	21	3.0	21	80	20	67	52	1	0	45	1.10
407886--407935	26	1.9	26	88	8	75	42	0	8	50	1.32
412654--412747	48	2.0	48	100	0	188	31	14	19	34	1.92
414292--414335	22	2.0	22	91	8	72	6	27	20	45	1.76
418346--418394	18	2.7	18	100	0	98	34	6	26	32	1.81
418140--418638	253	2.0	253	99	0	989	36	10	19	34	1.85
418599--418638	18	2.2	18	100	0	80	35	5	27	32	1.79
418786--418862	28	2.6	30	89	8	99	38	6	9	45	1.62
418798--418862	28	2.3	28	97	0	121	36	7	10	44	1.68
420460--420485	2	13.0	2	100	0	52	50	0	0	50	1.00
427123--427177	26	2.1	26	100	0	110	38	14	10	36	1.81
427259--427319	29	2.1	29	81	9	70	31	13	16	39	1.87
433413--433459	22	2.1	22	88	0	67	44	6	8	40	1.60
436379--436424	22	2.2	21	88	7	67	45	15	8	30	1.76
436512--436553	18	2.3	18	84	12	50	42	11	7	38	1.69
436528--436576	18	2.7	18	84	6	55	48	6	12	32	1.65
436679--436806	17	7.4	17	74	6	78	43	13	14	28	1.83
437044--437099	23	2.5	22	76	2	58	55	8	5	30	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
438686--438813	45	2.8	45	81	9	170	43	12	8	35	1.73
449184--449225	14	3.0	14	82	10	50	23	2	2	71	1.10
449181--449261	25	3.1	26	78	13	78	23	3	1	71	1.09
449219--449267	19	2.6	19	81	15	66	26	6	0	67	1.14
463319--464603	334	3.9	332	85	1	1662	37	12	13	35	1.83
469335--469414	41	1.9	41	85	7	108	28	6	10	55	1.57
475606--475681	35	2.2	35	79	15	86	71	2	0	26	1.00
475622--475691	25	2.7	26	75	20	74	70	1	1	27	1.05
476430--476458	3	9.7	3	100	0	58	65	0	34	0	0.93
477062--477096	2	17.5	2	93	0	61	48	2	0	48	1.16
477359--477404	3	15.3	3	100	0	92	67	0	0	32	0.91
481585--481644	27	2.3	24	83	8	66	46	8	3	41	1.50
481340--481691	190	1.9	188	80	9	416	38	9	6	46	1.61
482775--483003	44	5.2	44	76	4	169	41	17	12	29	1.86
482836--483002	44	3.8	44	80	0	174	40	15	14	29	1.87
484157--484230	7	10.4	7	77	2	58	4	16	1	78	0.97
488376--488407	16	2.0	16	100	0	64	25	18	18	37	1.94
493304--493365	25	2.4	26	81	13	74	40	6	4	48	1.50
493964--493995	11	2.8	12	90	9	50	46	6	6	40	1.54
500222--500284	26	2.4	26	92	5	101	20	9	22	47	1.78
501633--501679	16	3.2	15	85	11	62	34	8	0	57	1.29
501656--501714	13	4.3	13	77	10	55	37	1	1	59	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
501661--501716	7	8.0	7	80	13	62	39	0	1	58	1.08
501663--501716	28	1.9	28	88	0	81	37	0	1	61	1.07
501730--501775	3	15.3	3	100	0	92	32	0	0	67	0.91
502045--502077	15	2.1	16	88	5	50	6	0	6	87	0.65
502045--502114	14	4.9	14	80	3	59	12	0	10	77	1.00
502443--502562	35	3.4	35	82	2	143	50	14	15	20	1.77
510318--510403	20	4.6	19	69	26	67	54	5	6	32	1.51
510314--510538	87	2.6	87	88	2	339	55	8	5	30	1.53
510349--510522	32	5.7	32	78	12	186	55	8	5	29	1.53
510382--510489	55	2.0	54	88	1	162	56	9	5	28	1.53
510399--510458	23	2.8	22	78	14	72	60	10	5	25	1.49
510486--510527	20	2.1	20	90	0	66	54	9	4	30	1.53
510506--510660	24	6.8	24	68	20	109	54	10	3	32	1.50
510590--510633	20	2.2	20	87	4	61	54	13	2	29	1.51
510520--510662	46	3.2	43	77	14	141	54	9	2	32	1.48
510636--510670	16	2.1	17	89	5	54	51	11	5	31	1.61
511601--512295	42	16.4	43	77	5	664	40	19	12	27	1.87
511601--512295	85	8.2	85	79	6	701	40	19	12	27	1.87
511607--512294	127	5.4	127	78	7	646	41	19	11	27	1.86
518935--518974	13	2.9	14	81	7	55	47	12	10	30	1.74
518960--518997	20	1.9	20	88	0	58	50	10	5	34	1.59
519185--519224	20	2.0	20	95	0	71	52	7	5	35	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
519190--519233	20	2.2	20	83	0	52	52	11	6	29	1.63
519206--519251	24	1.9	24	86	0	65	52	10	6	30	1.62
519253--519330	20	3.8	20	81	9	102	51	10	6	32	1.61
519290--519362	32	2.2	32	90	7	112	52	10	6	30	1.63
519253--519363	20	5.8	19	72	25	92	52	10	6	30	1.61
519347--519482	24	5.8	24	73	12	122	52	11	2	33	1.51
524460--524493	17	2.1	16	88	5	50	26	0	2	70	1.01
529356--529380	13	1.9	13	100	0	50	28	32	8	32	1.86
529388--529423	18	2.0	18	88	0	54	47	13	16	22	1.82
538125--538149	13	1.9	13	100	0	50	28	32	8	32	1.86
547984--548032	25	1.9	25	87	4	71	20	8	22	48	1.75
547949--548031	12	6.4	13	70	17	57	19	7	19	54	1.67
547954--548038	26	3.2	25	75	8	71	20	7	20	52	1.68
548254--548375	3	41.7	3	74	11	92	36	1	1	59	1.17
549989--550060	33	2.3	31	81	11	83	15	8	8	68	1.39
550104--550151	7	6.6	7	76	9	51	20	2	0	77	0.88
550222--550299	6	11.7	7	77	10	58	33	1	1	64	1.10
550212--550298	7	12.7	7	80	10	67	32	2	1	64	1.13
550218--550299	20	4.1	20	75	6	85	34	1	1	63	1.10
550220--550309	27	3.3	27	75	9	85	33	1	1	64	1.08
550300--550338	3	13.0	3	100	0	78	33	0	0	66	0.92
552342--552396	29	1.9	28	88	3	83	49	3	0	47	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
552342--552396	28	2.0	28	85	7	76	49	3	0	47	1.19
559539--559589	25	2.0	25	100	0	102	49	19	7	23	1.74
561665--561801	73	1.9	72	83	4	177	27	16	22	33	1.96
568610--568653	22	1.9	24	82	17	58	29	9	4	56	1.50
572720--572764	16	2.8	16	90	6	65	68	11	0	20	1.19
572713--572787	16	4.8	16	77	15	59	74	8	1	16	1.11
572770--572799	13	2.3	13	94	0	51	86	10	0	3	0.67
574493--574519	14	1.9	14	100	0	54	74	0	25	0	0.83
576444--576519	6	13.0	6	76	13	61	76	0	7	15	1.01
576490--576524	16	2.3	15	90	5	52	80	0	2	17	0.84
576786--576810	13	1.9	13	100	0	50	80	0	0	20	0.72
576970--577191	108	2.0	111	92	3	378	54	2	7	35	1.43
577669--577694	2	13.0	2	100	0	52	50	0	0	50	1.00
577747--577790	10	4.5	10	81	16	56	29	0	2	68	1.02
577741--577790	18	2.8	19	76	8	52	34	0	2	64	1.05
577820--577860	10	3.8	10	84	15	55	58	2	0	39	1.11
577820--577862	12	3.8	11	85	11	52	58	2	0	39	1.11
579643--579668	9	2.9	9	100	0	52	42	0	23	34	1.54
581844--581894	22	2.3	22	89	0	84	29	13	13	43	1.83
583305--583385	21	3.9	21	76	0	81	32	27	7	33	1.84
583305--583385	42	1.9	42	82	0	99	32	27	7	33	1.84
583505--583537	14	2.3	15	89	5	50	39	24	0	36	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
583735--583976	120	2.0	121	96	0	450	32	17	5	43	1.73
584345--584384	21	1.9	21	84	0	53	32	25	5	37	1.77
584837--584877	14	2.7	15	85	14	57	29	14	0	56	1.39
589829--589869	2	20.5	2	100	0	82	0	48	0	51	1.00
589869--589893	2	12.5	2	100	0	50	48	0	0	52	1.00
595556--595588	2	16.5	2	93	0	57	0	3	48	48	1.17
606581--606606	7	3.7	7	100	0	52	15	26	42	15	1.87
606740--606803	21	3.2	21	74	17	73	10	12	43	32	1.77
606750--606784	17	2.1	17	94	0	61	5	14	48	31	1.67
612296--612436	73	1.9	74	88	1	212	43	18	17	21	1.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121