genome.fa.s79.2.7.7.80.10.50.1000.100.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167904.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_17, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  21107920

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   

This is table  100  of  121  ( 14423 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17027735--17027771	17	2.2	17	90	0	56	29	2	0	67	1.04
17028036--17028077	21	2.0	21	85	0	57	16	7	2	73	1.15
17028288--17028350	32	2.0	32	84	12	85	61	7	1	28	1.33
17029291--17029317	6	4.5	6	100	0	54	0	14	0	85	0.61
17029863--17029919	27	2.1	27	96	3	105	43	10	7	38	1.66
17032965--17032994	15	2.1	15	93	6	53	26	10	0	63	1.26
17034036--17034159	52	2.4	52	88	0	176	37	7	25	29	1.83
17034708--17034758	25	2.0	25	84	0	66	37	7	31	23	1.83
17034739--17034794	25	2.2	25	77	0	58	32	8	39	19	1.83
17035033--17035064	11	2.8	12	90	9	50	25	0	25	50	1.50
17035089--17035245	52	3.0	52	85	1	199	41	8	24	25	1.84
17036602--17036686	30	2.8	31	82	10	88	42	9	2	45	1.49
17037906--17037960	28	2.0	28	88	0	83	49	10	18	21	1.78
17038015--17038041	14	1.9	14	100	0	54	55	0	0	44	0.99
17038165--17038234	34	2.0	34	91	2	113	48	2	2	45	1.32
17040812--17040896	29	2.9	28	77	6	89	38	5	3	51	1.43
17041553--17041618	19	3.4	19	66	22	55	46	18	19	15	1.83
17041557--17041636	40	2.0	40	100	0	160	47	17	20	15	1.83
17041799--17041874	24	3.2	24	69	9	75	13	17	40	28	1.87
17041775--17042107	47	7.2	47	90	5	448	12	15	48	24	1.79
17041760--17042109	12	30.4	11	63	18	63	12	14	48	24	1.79
17050445--17050474	14	2.1	14	93	0	51	50	10	0	40	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17061631--17061695	27	2.4	27	94	0	112	15	16	32	35	1.91
17061651--17062151	102	4.9	102	89	0	770	13	15	31	38	1.87
17061918--17062001	27	3.0	27	74	16	89	19	15	32	33	1.93
17062077--17062196	45	2.7	45	85	5	170	11	16	31	40	1.85
17063198--17063235	6	6.3	6	100	0	76	31	0	0	68	0.90
17063202--17063241	18	2.2	18	90	0	62	30	2	2	65	1.19
17063467--17063497	14	2.2	14	94	0	53	51	0	3	45	1.17
17063514--17063551	17	2.2	17	95	0	67	34	2	0	63	1.09
17063809--17063849	21	2.0	21	85	4	57	17	7	2	73	1.17
17064056--17064119	32	2.0	32	87	9	94	62	7	1	28	1.32
17065618--17065674	27	2.1	27	96	3	105	43	10	7	38	1.66
17069207--17069245	2	19.5	2	100	0	78	51	0	0	48	1.00
17069792--17069948	52	3.0	52	82	5	174	44	8	21	25	1.81
17070426--17070509	30	2.8	30	90	1	123	29	20	23	26	1.99
17070551--17070628	25	3.2	25	74	3	70	32	8	35	23	1.86
17070527--17070628	50	2.1	48	81	7	116	34	7	34	23	1.84
17070932--17071057	52	2.4	53	90	5	195	41	8	22	27	1.83
17072379--17072472	30	3.2	29	78	4	89	38	6	1	54	1.33
17072423--17072499	30	2.6	30	83	6	93	42	7	2	46	1.46
17073722--17073782	28	2.2	28	93	0	104	44	9	19	26	1.82
17076621--17076706	29	3.0	28	77	5	91	40	5	2	51	1.39
17077363--17077428	19	3.4	19	66	22	55	46	18	19	15	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17077367--17077446	40	2.0	40	100	0	160	47	17	20	15	1.83
17077555--17077611	24	2.5	23	80	11	55	8	14	43	33	1.76
17077627--17077703	35	2.2	35	90	4	120	10	14	53	22	1.71
17077647--17077819	12	14.6	12	67	19	78	12	12	52	22	1.72
17077602--17077759	82	1.9	82	87	5	212	11	13	51	22	1.73
17077647--17077821	47	3.7	47	92	3	264	12	12	53	22	1.71
17079149--17079207	29	2.0	29	86	0	82	44	10	1	44	1.48
17081550--17081597	18	2.5	20	73	6	55	56	0	6	37	1.25
17084442--17084475	14	2.3	15	85	5	52	67	23	0	8	1.18
17084930--17084959	2	15.0	2	100	0	60	0	50	0	50	1.00
17085306--17085340	2	17.5	2	100	0	70	48	0	0	51	1.00
17085493--17085527	2	17.5	2	100	0	70	0	48	0	51	1.00
17085632--17085679	22	2.2	22	100	0	96	41	8	22	27	1.82
17085776--17085840	29	2.2	31	83	5	80	47	3	0	49	1.17
17087809--17087855	18	2.5	19	74	12	53	53	2	6	38	1.39
17088731--17089111	210	1.8	210	92	0	645	16	22	24	37	1.93
17088993--17089492	111	4.5	111	94	0	847	15	24	21	37	1.93
17092838--17093033	60	3.1	60	68	23	186	41	4	11	42	1.60
17092896--17093111	68	3.3	68	69	21	224	41	3	9	45	1.52
17092829--17093120	128	2.3	128	98	1	559	42	3	9	44	1.54
17093010--17093230	118	1.9	118	84	1	300	42	4	9	44	1.55
17093737--17093799	31	2.0	31	84	6	83	42	4	12	39	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17095654--17096229	243	2.3	247	88	4	838	13	21	26	38	1.91
17097842--17097878	17	2.3	17	86	9	51	40	2	2	54	1.29
17098183--17098280	30	3.2	30	84	7	92	39	1	14	44	1.52
17098196--17098288	30	3.1	30	86	7	109	44	0	13	41	1.44
17098214--17098309	30	3.2	28	84	10	104	43	1	11	43	1.47
17098623--17098678	28	2.0	28	83	10	71	55	0	1	42	1.10
17098633--17098678	12	3.1	15	76	23	53	56	0	0	43	0.99
17098755--17098813	32	2.0	31	83	12	79	55	3	0	40	1.16
17098861--17098885	2	12.5	2	100	0	50	52	0	0	48	1.00
17099794--17099821	3	9.3	3	100	0	56	32	0	0	67	0.91
17099943--17099995	24	2.3	22	81	12	61	62	3	1	32	1.24
17100780--17100890	30	3.7	30	80	1	125	40	2	6	50	1.42
17100902--17100935	17	2.0	17	88	11	52	52	8	2	35	1.47
17101045--17101076	2	16.0	2	93	0	55	46	0	0	53	1.00
17101344--17101384	20	2.0	20	86	9	57	51	0	4	43	1.23
17102103--17102154	20	2.5	21	93	6	88	51	0	0	48	1.00
17102140--17102193	8	6.6	8	79	12	65	57	0	0	42	0.98
17102301--17102336	17	2.1	18	89	5	56	61	2	0	36	1.11
17113934--17114010	37	2.1	36	83	7	93	44	3	2	49	1.34
17114026--17114313	71	4.0	70	76	9	278	43	8	4	43	1.54
17114029--17114310	143	2.0	143	84	8	378	42	8	4	44	1.53
17114026--17114313	72	4.0	71	76	8	264	43	8	4	43	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17117491--17117544	24	2.2	24	83	0	63	44	0	1	53	1.11
17117533--17117574	17	2.5	17	80	7	50	40	4	0	54	1.21
17117644--17117684	21	1.9	22	95	5	75	51	9	0	39	1.35
17119396--17119441	8	5.9	8	84	5	67	41	0	0	58	0.98
17119434--17119484	23	2.2	24	82	10	61	45	0	3	50	1.20
17120466--17120834	71	5.3	71	74	11	314	38	11	6	44	1.65
17122250--17122289	20	2.0	20	100	0	80	45	5	10	40	1.60
17123524--17123558	16	2.2	16	90	5	54	71	0	0	28	0.86
17126816--17126894	30	2.6	31	88	7	119	37	1	7	53	1.38
17126916--17126949	17	2.0	17	88	11	52	52	8	2	35	1.47
17127354--17127394	20	2.0	20	86	9	57	51	0	4	43	1.23
17128115--17128167	21	2.5	21	90	9	81	52	0	0	47	1.00
17128152--17128203	8	6.5	8	79	0	59	61	0	0	38	0.96
17128115--17128178	20	3.2	20	82	12	71	54	0	0	45	0.99
17128135--17128193	16	3.8	16	77	6	59	55	0	0	44	0.99
17137726--17137752	14	1.9	14	100	0	54	22	7	18	51	1.70
17138459--17138487	5	5.8	5	100	0	58	82	0	0	17	0.66
17139861--17139937	37	2.1	36	83	7	93	44	3	2	49	1.34
17139953--17140240	71	4.0	70	76	9	278	43	8	4	43	1.54
17139956--17140237	143	2.0	143	84	8	378	42	8	4	44	1.53
17139953--17140240	72	4.0	71	76	8	264	43	8	4	43	1.54
17143410--17143472	24	2.6	24	74	2	63	44	0	0	55	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17145328--17145373	8	5.9	8	84	5	67	41	0	0	58	0.98
17145328--17145400	31	2.4	31	84	9	87	42	0	1	56	1.08
17145366--17145416	23	2.2	24	82	10	61	47	0	1	50	1.12
17146385--17146749	71	5.2	70	73	10	275	39	10	5	44	1.62
17149421--17149455	16	2.2	16	90	5	54	71	0	0	28	0.86
17149410--17149454	22	2.1	21	87	4	63	66	4	0	28	1.11
17153565--17153594	13	2.3	13	100	0	60	30	36	6	26	1.82
17155998--17156036	20	2.0	20	85	10	53	74	0	12	12	1.08
17156642--17156806	24	7.2	24	71	14	116	33	4	9	52	1.55
17156919--17156977	18	3.3	18	68	13	50	28	8	13	49	1.71

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121