genome.fa.s79.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167904.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_17, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  21107920

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   

This is table  6  of  121  ( 14423 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
618352--618398	21	2.2	21	78	17	53	65	0	21	12	1.25
621939--621969	3	10.3	3	100	0	62	32	0	0	67	0.91
622112--622158	17	2.8	17	75	15	53	61	0	17	21	1.34
628363--628394	9	3.6	9	95	0	55	68	12	9	9	1.39
631612--631714	46	2.2	47	77	8	113	44	0	0	55	0.99
631664--631734	32	2.2	31	85	9	90	52	1	0	46	1.09
632054--632095	19	2.2	19	84	16	52	40	7	7	45	1.59
635845--635879	15	2.2	16	90	5	54	77	0	22	0	0.78
636607--636646	2	20.0	2	89	0	62	45	0	0	55	0.99
643694--643734	12	3.4	12	86	0	55	36	0	14	48	1.44
650491--650529	17	2.3	18	82	13	55	53	0	7	38	1.30
651027--651065	3	13.0	3	88	0	60	33	0	5	61	1.18
653415--653439	3	8.3	3	100	0	50	32	0	0	68	0.90
663369--663417	24	2.0	24	96	0	89	32	2	0	65	1.04
663401--663444	23	1.9	23	81	9	54	45	0	0	54	0.99
664977--665001	6	4.2	6	100	0	50	32	0	52	16	1.44
666462--666504	22	1.9	23	85	4	61	41	0	0	58	0.98
666471--666512	16	2.7	15	82	7	57	38	0	0	61	0.96
668332--668368	2	18.5	2	100	0	74	51	0	0	48	1.00
670349--670402	6	9.0	6	91	0	81	22	61	16	0	1.35
674239--674269	3	10.3	3	100	0	62	67	0	0	32	0.91
675990--676042	13	4.0	13	77	2	52	37	0	0	62	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
676079--676116	17	2.2	17	90	0	58	68	0	0	31	0.90
679794--679836	2	21.5	2	100	0	86	51	0	0	48	1.00
681776--681839	33	2.0	32	84	3	83	46	3	3	46	1.34
681946--681977	15	2.1	15	94	0	55	43	6	0	50	1.27
682217--682258	16	2.8	16	89	7	61	54	0	0	45	0.99
682222--682258	8	4.6	8	86	0	56	56	0	0	43	0.99
682219--682266	14	3.3	14	80	11	51	60	0	0	39	0.97
682222--682286	26	2.6	24	79	9	67	61	0	0	38	0.96
682357--682394	19	2.0	19	89	0	58	63	2	0	34	1.09
684360--684411	23	2.4	21	87	9	70	46	0	32	21	1.52
689094--689118	2	12.5	2	100	0	50	0	48	0	52	1.00
692470--693293	415	2.0	415	99	0	1639	37	15	20	26	1.92
699314--699346	3	11.0	3	100	0	66	66	0	0	33	0.92
705024--705068	11	4.4	11	80	11	51	60	0	0	40	0.97
717735--718660	233	4.0	233	84	4	1150	35	16	12	35	1.87
717735--718660	465	2.0	467	84	3	1206	35	16	12	35	1.87
720327--720371	23	1.9	23	86	13	65	8	15	0	75	1.03
721280--721329	18	2.7	19	77	20	52	24	0	2	74	0.93
721281--721336	21	2.6	22	83	5	62	23	0	3	73	0.99
721581--721630	18	2.9	16	82	11	55	68	2	4	26	1.18
722267--722292	10	2.6	10	100	0	52	46	0	0	53	1.00
725427--725451	13	1.9	13	100	0	50	68	8	0	24	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
730645--730770	63	2.0	63	95	0	225	42	8	26	21	1.82
733673--734298	50	13.0	50	78	9	504	30	12	20	36	1.90
733673--734264	192	3.1	192	81	9	647	30	12	20	36	1.89
733684--734298	46	12.8	46	78	9	531	30	12	20	36	1.90
734476--734539	16	4.1	16	76	15	62	7	10	0	81	0.88
734482--734514	17	1.9	17	93	0	57	9	3	0	87	0.63
734483--734533	26	2.0	26	84	7	68	5	9	0	84	0.78
734479--734514	18	2.1	18	94	5	65	11	2	0	86	0.68
734476--734535	30	2.0	29	83	3	75	8	8	0	83	0.82
734476--734552	29	2.6	30	82	10	79	6	14	0	79	0.92
735756--735805	18	2.9	16	82	11	55	68	2	4	26	1.18
737811--737862	16	3.1	16	89	10	86	46	0	17	36	1.48
737806--737862	18	3.3	18	90	9	100	45	0	17	36	1.49
739364--739699	58	5.8	59	82	6	373	38	13	4	42	1.65
739364--739719	116	3.1	114	82	5	419	39	12	4	42	1.64
740594--740662	16	4.2	17	75	12	63	57	2	5	33	1.37
740653--740698	4	12.0	4	81	9	60	76	2	0	21	0.90
740648--740695	23	2.1	23	92	0	78	75	4	2	18	1.07
740664--740737	15	4.9	14	76	16	60	75	5	2	16	1.10
740705--740745	6	6.7	6	89	10	57	82	4	0	12	0.81
740888--740923	13	2.8	13	86	0	54	0	8	2	88	0.59
740998--741375	44	8.8	42	72	9	237	42	18	13	26	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
740999--741385	130	3.0	129	76	6	363	43	17	12	26	1.85
741084--741385	86	3.5	86	81	4	369	42	17	13	26	1.86
742385--742460	16	4.6	17	74	20	65	7	13	0	78	0.94
742421--742461	22	1.9	21	90	5	64	9	12	0	78	0.98
745443--745525	28	3.0	28	90	0	139	32	24	14	28	1.94
752936--753096	59	2.8	58	83	4	218	36	13	6	44	1.68
753108--753139	14	2.3	14	94	0	55	78	0	3	18	0.89
754010--754051	16	2.6	17	78	14	54	57	2	7	33	1.39
754035--754120	32	2.7	32	80	5	84	61	2	5	30	1.32
754112--754169	22	2.6	23	76	15	66	75	5	1	17	1.06
754134--754197	6	10.7	6	81	18	64	81	3	0	15	0.82
754162--754198	5	7.0	5	88	11	56	81	0	0	18	0.70
754133--754197	12	5.3	12	80	15	80	81	3	0	15	0.81
759092--759127	16	2.2	16	90	0	54	38	0	19	41	1.52
762234--762520	143	2.0	143	97	0	538	33	8	27	30	1.87
762929--762972	22	2.0	23	86	4	63	45	11	4	38	1.61
773595--773623	3	9.7	3	100	0	58	34	34	31	0	1.58
779695--779755	12	5.3	12	74	18	58	52	0	0	47	1.00
779695--779755	20	2.7	22	78	12	63	52	0	0	47	1.00
789168--789277	55	2.0	55	100	0	220	36	10	30	21	1.88
792964--793010	19	2.5	19	82	0	67	36	0	2	61	1.08
793239--793338	51	2.0	51	88	4	148	47	12	10	31	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
794285--794345	25	2.3	27	78	21	76	39	3	3	54	1.33
794362--794396	17	2.1	17	88	0	52	28	0	0	71	0.86
796634--796673	2	21.5	2	82	14	50	52	2	0	45	1.14
796726--796766	23	1.9	22	85	14	59	51	0	4	43	1.23
803437--803511	23	3.3	23	75	14	59	49	1	5	44	1.33
803829--803991	81	2.0	80	89	3	247	49	12	17	20	1.79
805547--805585	21	1.9	21	89	5	62	43	20	5	30	1.73
806535--806568	1	34.0	1	90	0	50	0	2	2	94	0.38
819150--819174	2	12.5	2	100	0	50	52	0	0	48	1.00
824226--824267	22	1.9	22	90	0	66	61	0	0	38	0.96
825082--825157	37	2.0	40	84	7	104	39	2	2	55	1.28
837013--837079	28	2.3	29	83	16	86	46	1	4	47	1.31
837032--837079	15	3.1	15	72	3	51	45	0	4	50	1.21
837094--837143	13	3.8	13	78	2	55	40	0	0	60	0.97
837120--837167	22	2.2	22	82	14	55	47	0	2	50	1.12
837096--837199	33	3.1	33	72	10	86	45	0	1	52	1.11
837180--837221	18	2.3	19	87	4	59	61	0	2	35	1.09
837661--837701	18	2.3	18	86	0	55	58	0	0	41	0.98
850298--850338	12	3.2	13	76	16	50	36	0	0	63	0.95
850316--850354	20	1.9	21	84	5	53	48	0	0	51	1.00
850383--850417	18	1.9	18	88	11	54	65	0	0	34	0.93
856605--856639	18	1.9	18	88	11	54	82	0	14	2	0.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
865001--865037	18	2.2	18	85	9	51	40	0	5	54	1.24
866114--866171	29	2.0	28	83	9	73	48	3	1	46	1.29
868576--868630	20	2.8	19	76	10	58	52	1	0	45	1.11
873006--873085	31	2.5	32	85	4	92	21	26	21	31	1.98
873024--873085	31	2.0	31	93	0	106	22	29	20	27	1.99
876986--877052	32	2.1	33	94	2	118	37	4	5	52	1.46
876989--877060	32	2.2	33	90	2	110	31	6	6	54	1.54
877449--877482	2	17.0	2	100	0	68	0	50	0	50	1.00
880740--880766	1	27.0	1	100	0	54	0	0	100	0	0.00
883457--883486	2	15.0	2	92	0	51	53	0	0	46	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121