genome.fa.s14.2.7.7.80.10.50.1000.100.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr12
Parameters: 2 7 7 80 10 50 1000
Length:  39383930

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  100  of  126  ( 15042 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30487287--30487361	29	2.6	29	81	6	82	45	18	13	22	1.84
30499538--30499611	33	2.2	33	80	4	87	21	20	10	47	1.80
30499588--30499699	33	3.4	33	76	12	104	19	26	12	41	1.87
30499709--30499860	63	2.4	63	91	2	234	19	26	17	36	1.94
30511124--30511251	57	2.3	55	84	4	166	40	5	17	35	1.73
30526582--30526853	50	5.7	46	79	9	269	26	20	31	21	1.98
30526585--30526885	95	3.1	94	85	8	358	27	20	30	22	1.98
30532730--30532794	27	2.4	27	92	0	103	30	32	15	21	1.94
30537210--30537274	21	3.2	21	64	27	59	40	26	9	24	1.85
30537198--30537275	39	2.0	39	97	0	147	37	32	7	23	1.83
30547364--30547463	31	3.3	30	77	6	76	39	5	9	47	1.57
30549580--30549635	23	2.2	25	79	20	64	48	0	3	48	1.19
30551995--30552032	20	1.9	20	88	0	58	86	2	0	10	0.66
30559511--30559942	209	2.1	208	88	4	640	29	25	20	24	1.99
30560539--30560601	7	9.0	7	78	0	54	15	1	36	46	1.56
30560569--30560609	21	2.0	21	90	0	64	21	0	29	48	1.50
30560539--30560601	28	2.2	28	86	5	92	15	1	36	46	1.56
30560737--30560766	15	2.0	15	93	0	51	63	0	3	33	1.11
30561528--30561571	19	2.2	20	88	4	63	27	43	2	27	1.67
30561927--30561953	6	4.5	6	100	0	54	33	0	14	51	1.43
30568612--30568651	21	1.9	21	84	0	53	32	12	50	5	1.62
30569055--30569443	86	4.5	86	95	0	645	26	18	29	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30569006--30569443	43	10.2	43	83	1	520	26	18	29	25	1.98
30579015--30579061	20	2.3	20	88	0	67	21	21	19	38	1.94
30581354--30581461	51	2.1	51	91	0	171	31	14	11	42	1.81
30588983--30589270	150	1.9	150	100	0	576	29	9	16	44	1.79
30592760--30592789	3	10.3	3	92	7	53	30	0	0	70	0.88
30594684--30594708	13	1.9	13	100	0	50	28	8	16	48	1.74
30600219--30600807	44	13.1	43	70	17	295	33	17	22	26	1.96
30600218--30600825	89	6.8	88	87	4	734	33	17	22	26	1.96
30600218--30600809	274	2.2	267	84	4	751	33	17	22	26	1.96
30601205--30601284	11	7.4	11	74	17	69	36	2	0	61	1.10
30601157--30601272	42	2.9	41	89	6	168	34	2	0	62	1.09
30601156--30601303	38	3.8	40	82	13	166	35	2	0	61	1.10
30601205--30601306	11	9.1	11	69	23	52	36	1	0	61	1.07
30607572--30607614	18	2.4	18	92	7	70	20	4	48	25	1.69
30608258--30608345	24	3.7	23	77	7	79	31	11	15	40	1.83
30623408--30623475	34	2.0	34	82	5	84	22	23	22	32	1.98
30635591--30635636	14	3.3	14	82	11	58	32	4	0	63	1.14
30640152--30640197	22	2.1	22	84	8	58	41	2	6	50	1.40
30642136--30642456	85	3.8	85	93	1	511	35	24	16	23	1.95
30642144--30642455	42	7.4	42	77	9	276	35	25	16	23	1.94
30642432--30642484	26	2.0	26	92	0	88	22	33	24	18	1.97
30644405--30644555	42	3.5	42	78	7	110	25	19	25	29	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30644454--30644555	42	2.4	42	84	9	120	25	21	24	28	1.99
30646788--30646854	29	2.3	29	84	2	80	47	20	4	26	1.69
30647465--30647511	13	3.5	13	88	5	58	21	2	4	72	1.12
30647662--30647724	9	7.3	9	69	16	53	57	0	0	42	0.99
30647696--30647845	70	2.1	72	90	5	241	42	3	2	52	1.32
30647739--30647784	18	2.4	19	82	10	58	41	2	0	56	1.11
30647755--30647795	20	2.0	20	85	0	55	53	0	0	46	1.00
30647898--30647969	20	3.6	20	70	7	65	54	2	6	36	1.42
30647896--30647971	40	1.9	40	94	0	134	53	2	6	36	1.41
30650908--30650976	16	4.2	16	92	3	120	24	1	37	36	1.65
30650908--30650976	33	2.1	32	94	2	120	24	1	37	36	1.65
30651212--30651246	18	2.0	17	88	5	52	54	0	0	45	0.99
30654633--30654662	9	3.3	9	100	0	60	70	0	0	30	0.88
30667122--30667169	23	2.1	23	84	7	62	68	4	2	25	1.18
30672526--30672559	17	2.0	17	100	0	68	41	5	17	35	1.74
30675113--30675150	18	2.1	18	100	0	76	36	26	15	21	1.93
30675314--30675356	17	2.5	17	96	0	77	30	11	9	48	1.71
30676264--30676298	3	11.7	3	100	0	70	31	0	0	68	0.90
30684109--30684443	171	2.0	171	95	0	607	29	17	25	27	1.98
30690254--30690281	13	2.2	13	100	0	56	35	14	25	25	1.93
30690900--30690953	21	2.6	21	90	0	81	31	27	5	35	1.80
30691324--30691351	8	3.5	8	100	0	56	78	0	10	10	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30694824--30694857	17	1.9	18	88	5	52	35	2	11	50	1.54
30695694--30695721	7	4.0	7	100	0	56	57	0	0	42	0.99
30697492--30697542	9	5.6	9	79	11	50	70	1	1	25	1.08
30697485--30697542	18	3.2	18	75	9	64	72	1	1	24	1.03
30698198--30698226	9	3.2	9	100	0	58	27	31	20	20	1.98
30706195--30706224	7	4.3	7	95	0	51	43	23	0	33	1.54
30726362--30726436	21	3.7	21	71	16	68	34	4	2	58	1.31
30739565--30739626	31	2.0	31	100	0	124	41	19	9	29	1.83
30744252--30744320	35	2.0	35	94	0	120	10	30	2	56	1.47
30758447--30758507	25	2.5	24	73	5	59	22	6	14	55	1.62
30763044--30763081	19	2.0	20	85	15	53	39	23	0	36	1.55
30763310--30764221	46	19.7	46	70	15	612	31	28	16	24	1.96
30763312--30764224	93	9.8	91	96	1	1506	31	28	15	23	1.96
30764644--30764703	30	2.0	30	87	6	86	31	25	6	36	1.82
30771378--30771415	19	2.0	20	85	15	53	39	23	0	36	1.55
30771646--30771815	93	1.8	93	89	0	268	30	28	18	22	1.97
30771640--30771810	46	3.7	46	75	13	170	30	28	18	22	1.97
30777825--30777888	32	2.1	30	83	11	78	43	0	4	51	1.22
30778019--30778098	32	2.6	30	78	11	90	60	0	1	38	1.05
30778035--30778084	24	2.1	23	82	14	57	54	0	2	44	1.11
30781744--30781847	38	2.6	39	87	7	113	16	26	36	20	1.93
30781763--30781847	38	2.2	38	97	0	161	14	25	38	21	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30794197--30794237	5	7.8	5	89	10	64	17	2	0	80	0.82
30794197--30794239	22	2.0	21	95	4	77	18	2	0	79	0.85
30799484--30799535	26	2.0	26	88	3	79	50	3	0	46	1.20
30799688--30799758	16	4.4	16	89	0	106	29	26	7	36	1.83
30803799--30803832	5	6.8	5	100	0	68	17	0	0	82	0.67
30805083--30805147	24	2.7	24	81	9	62	40	20	13	26	1.89
30806551--30806599	21	2.3	21	89	0	71	20	20	26	32	1.97
30807405--30807478	9	8.7	9	77	14	61	36	0	1	62	1.04
30807405--30807480	17	4.5	17	79	11	84	38	0	1	60	1.05
30819450--30819529	42	1.9	42	97	0	151	26	13	7	52	1.67
30827540--30827569	15	2.0	15	93	0	51	40	10	6	43	1.64
30831241--30831500	130	2.0	130	99	0	511	46	8	6	38	1.60
30831541--30831599	31	1.9	31	96	0	109	42	10	10	37	1.73
30831627--30832303	226	3.0	226	94	1	1140	36	16	11	35	1.85
30838626--30838731	53	2.0	53	98	0	203	16	14	20	48	1.81
30842808--30843183	44	8.8	44	74	8	274	28	25	16	28	1.97
30842808--30843183	88	4.4	88	74	9	337	28	25	16	28	1.97
30842866--30843183	168	1.9	168	95	1	575	28	27	15	28	1.96
30843037--30843208	44	3.9	45	78	8	156	29	26	15	27	1.96
30866149--30866422	46	5.8	47	73	11	177	22	31	20	25	1.98
30876949--30876995	22	2.1	22	100	0	94	27	10	17	44	1.81
30878241--30878507	88	3.0	88	98	0	509	29	13	24	31	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30879584--30879634	26	2.0	25	81	11	59	54	3	1	39	1.30
30888275--30888333	30	2.0	30	90	6	93	45	6	3	44	1.47
30888306--30888366	22	2.7	24	75	10	74	47	3	1	47	1.28
30889166--30889190	11	2.3	11	100	0	50	8	8	28	56	1.57
30891019--30891076	29	2.0	29	100	0	116	48	10	10	31	1.71
30891284--30891348	25	2.5	26	82	5	78	56	3	35	4	1.35
30891392--30891435	6	7.2	6	89	5	70	36	0	61	2	1.09
30891392--30891443	18	2.9	18	85	5	52	38	0	59	1	1.08
30893088--30893294	35	6.0	34	88	3	279	28	13	22	35	1.92
30893088--30893294	69	3.0	69	88	2	290	28	13	22	35	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126