genome.fa.s14.2.7.7.80.10.50.1000.116.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr12
Parameters: 2 7 7 80 10 50 1000
Length:  39383930

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  116  of  126  ( 15042 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35839853--35839908	28	2.0	28	96	0	103	48	7	17	26	1.73
35848210--35848445	26	9.1	26	81	5	217	37	17	16	28	1.91
35848210--35848408	78	2.6	78	82	10	244	37	17	15	30	1.90
35848210--35848445	78	3.0	77	78	7	242	37	17	16	28	1.91
35848660--35848922	131	2.0	131	98	0	508	15	15	37	31	1.89
35853544--35855449	951	2.0	951	91	1	3120	27	16	24	30	1.97
35855760--35855787	10	2.8	10	100	0	56	10	0	67	21	1.20
35857174--35857238	27	2.4	27	80	7	71	21	23	23	32	1.98
35858270--35858334	33	1.9	34	90	3	105	36	43	3	16	1.64
35867360--35867611	26	9.7	26	89	1	344	38	19	15	26	1.91
35867360--35867648	52	5.5	52	87	2	384	38	20	16	25	1.92
35867370--35867648	78	3.6	78	84	4	348	38	20	16	24	1.93
35867360--35867648	26	11.1	25	83	4	202	38	20	16	25	1.92
35867604--35867666	27	2.3	27	83	5	74	34	25	19	20	1.96
35867818--35867882	27	2.4	27	85	7	89	20	24	23	32	1.98
35875010--35875182	26	6.7	26	85	1	231	36	19	16	27	1.93
35875010--35875182	78	2.2	78	89	0	265	36	19	16	27	1.93
35875010--35875210	52	3.8	52	83	5	230	36	19	16	26	1.93
35875010--35875209	26	7.7	26	82	3	160	37	19	17	27	1.93
35875602--35875661	28	2.2	27	84	3	75	23	23	23	30	1.99
35880950--35881007	30	1.9	30	85	0	80	41	6	20	31	1.79
35881370--35881562	43	4.5	43	79	10	218	22	15	26	35	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35881370--35881607	85	2.8	84	88	1	332	23	15	25	35	1.94
35883692--35883744	24	2.2	24	96	0	97	64	3	13	18	1.43
35884558--35884610	24	2.2	24	96	0	97	64	3	13	18	1.43
35883679--35885412	866	2.0	866	100	0	3468	36	10	18	34	1.85
35884888--35886159	636	2.0	635	99	0	2517	35	11	20	32	1.88
35888984--35889222	42	5.6	42	76	10	218	22	16	27	33	1.95
35888984--35889219	85	2.8	85	94	0	391	22	15	27	34	1.95
35890461--35890497	14	2.7	14	88	12	51	27	0	2	70	1.01
35890730--35890866	71	1.9	71	81	6	166	29	24	21	24	1.99
35891650--35891695	24	1.9	24	86	8	67	21	26	30	21	1.99
35902121--35902229	41	2.7	41	84	2	130	27	16	26	29	1.97
35905997--35906063	21	3.2	21	64	19	59	43	10	17	28	1.82
35912115--35912153	18	2.2	17	82	13	51	5	17	2	74	1.12
35917106--35917214	41	2.7	41	79	2	112	29	16	24	29	1.97
35918717--35918779	28	2.1	29	82	11	74	25	4	9	60	1.47
35919542--35919608	33	2.0	33	85	0	89	32	22	14	29	1.94
35921011--35921368	27	13.3	27	80	8	216	21	15	19	43	1.87
35921036--35921368	54	6.2	54	81	7	340	20	15	20	43	1.88
35921011--35921368	81	4.4	80	81	5	373	21	15	19	43	1.87
35926712--35926754	21	2.0	22	86	4	61	16	20	27	34	1.94
35932051--35932103	25	2.0	27	85	7	74	49	7	16	26	1.73
35947418--35947449	16	2.0	16	93	0	55	25	15	0	59	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35947677--35947867	51	3.8	50	79	9	226	29	28	17	24	1.97
35947675--35947859	101	1.8	102	88	3	284	29	28	17	24	1.97
35947667--35947859	102	1.9	102	87	3	273	29	28	18	24	1.98
35948556--35948925	184	2.0	184	100	0	740	34	19	8	37	1.83
35955814--35955849	18	2.1	18	89	5	56	38	2	0	58	1.13
35956083--35956200	43	2.7	43	78	2	112	30	21	15	33	1.94
35956247--35956352	43	2.5	43	89	3	160	30	14	21	33	1.93
35962172--35962202	15	2.0	16	93	6	55	32	6	9	51	1.60
35967432--35967458	7	3.9	7	100	0	54	14	0	0	85	0.61
35972564--35972632	26	2.7	26	88	0	102	28	24	24	21	1.99
35976661--35976722	25	2.6	25	80	7	67	6	29	3	61	1.37
35978968--35979020	15	3.2	15	80	17	52	54	1	1	41	1.22
35979051--35979089	20	2.0	20	94	0	69	48	0	2	48	1.15
35979188--35979227	20	2.0	20	90	0	62	50	10	10	30	1.69
35979176--35979242	34	1.9	35	87	3	100	47	10	8	32	1.69
35979211--35979250	14	2.9	14	84	0	53	42	15	7	35	1.75
35993098--35993136	20	1.9	21	89	5	62	43	5	0	51	1.24
35993785--35993835	26	2.0	26	92	0	84	27	5	23	43	1.77
35995332--35995369	18	2.1	18	85	9	51	28	7	2	60	1.38
35996546--35996594	22	2.2	22	78	7	55	14	10	12	63	1.53
35996626--35996685	30	2.0	30	90	0	93	26	5	13	55	1.59
35997906--35997946	21	2.0	21	85	0	55	51	14	2	31	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35998271--35998355	39	2.2	39	78	16	88	51	1	3	43	1.26
36009638--36009852	116	1.9	112	83	8	276	43	5	11	39	1.64
36011838--36011881	13	3.4	13	80	0	52	29	0	0	70	0.88
36011854--36011929	40	1.9	39	81	7	91	39	1	3	55	1.27
36012837--36012878	20	2.0	20	86	4	57	38	9	9	42	1.70
36018017--36018292	50	5.4	50	84	3	178	23	28	20	27	1.99
36018053--36018300	50	4.8	50	86	3	298	22	29	21	26	1.99
36018395--36018426	13	2.5	13	94	0	55	56	12	0	31	1.37
36018638--36018695	30	1.9	30	89	0	89	31	24	3	41	1.71
36025668--36025905	50	4.7	50	79	4	199	23	27	21	28	1.99
36025668--36025859	99	1.9	100	80	1	224	21	28	21	29	1.98
36032369--36032519	53	2.9	53	80	5	137	34	13	22	29	1.93
36032644--36032821	57	3.1	56	81	5	180	29	14	25	29	1.95
36040958--36041211	56	4.7	56	93	3	405	27	18	27	25	1.98
36040958--36041311	100	3.3	106	84	6	393	27	19	27	24	1.99
36040958--36041360	50	7.7	50	84	6	348	28	19	27	24	1.99
36046992--36047048	29	1.9	30	86	10	82	35	7	26	31	1.83
36047387--36047834	50	8.8	50	72	11	277	28	19	28	24	1.98
36048538--36048720	98	1.9	98	81	2	224	24	22	33	19	1.97
36048647--36048778	49	2.7	49	84	3	158	29	21	27	21	1.99
36048543--36048777	50	4.8	50	78	6	192	25	22	31	20	1.98
36050380--36050436	29	1.9	30	89	3	89	35	5	26	33	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36050775--36051201	50	8.4	50	72	12	271	28	20	27	23	1.99
36051922--36052113	50	3.9	49	82	5	208	25	22	31	20	1.98
36051924--36052162	50	4.9	48	79	6	194	26	22	29	21	1.99
36051924--36052113	98	1.9	98	81	2	229	25	23	31	20	1.98
36054159--36054296	56	2.6	50	86	6	168	28	20	28	23	1.99
36054159--36054348	50	3.7	50	85	5	193	27	20	29	23	1.98
36054211--36054392	50	3.6	50	80	4	197	26	20	30	21	1.98
36055106--36055286	50	3.6	50	79	3	157	25	20	32	22	1.98
36058419--36058490	27	2.8	26	73	19	69	29	15	12	43	1.83
36058449--36058502	27	2.0	25	83	16	65	31	16	11	40	1.84
36058453--36058516	13	4.8	13	70	25	53	31	15	10	42	1.82
36058453--36058530	40	2.0	40	97	0	147	32	15	10	42	1.80
36058501--36058555	25	2.2	25	83	6	67	29	16	14	40	1.88
36058885--36058927	18	2.4	16	82	17	50	41	13	0	44	1.44
36058885--36058929	19	2.5	17	80	20	56	42	13	0	44	1.43
36081075--36081119	14	3.1	15	84	12	58	68	0	15	15	1.21
36081082--36081119	7	5.4	7	81	12	51	68	0	15	15	1.22
36081084--36081135	14	3.5	14	72	23	52	69	0	15	15	1.20
36081074--36081133	17	3.3	17	76	19	59	70	0	15	15	1.18
36082405--36083176	100	7.7	100	84	1	938	33	22	18	24	1.97
36082420--36083107	300	2.3	300	88	1	1038	34	22	18	24	1.96
36096473--36096670	47	4.2	47	88	0	252	36	20	13	29	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36112929--36112960	16	2.1	16	88	11	50	62	21	0	15	1.32
36119733--36119772	13	3.1	13	85	0	53	32	0	25	42	1.55
36119798--36119831	13	2.7	12	90	9	50	44	2	20	32	1.67
36129618--36129664	15	3.1	15	84	0	58	29	25	17	27	1.97
36129689--36129764	23	3.4	22	75	10	55	34	14	19	31	1.92
36141852--36141900	24	2.0	24	84	7	64	36	12	6	44	1.67
36145615--36145656	16	2.5	17	92	7	68	80	0	2	16	0.81
36145615--36145656	8	5.0	8	85	8	57	80	0	2	16	0.81
36155488--36155603	25	4.6	25	89	0	160	24	21	24	30	1.99
36158916--36159031	25	4.6	25	89	0	160	24	21	24	30	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126