genome.fa.s14.2.7.7.80.10.50.1000.23.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr12
Parameters: 2 7 7 80 10 50 1000
Length:  39383930

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  23  of  126  ( 15042 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6707094--6707332	105	2.3	104	84	5	304	26	17	25	30	1.98
6707109--6707306	51	3.8	51	75	7	166	23	20	27	29	1.99
6720918--6720961	22	2.0	23	86	4	63	50	0	20	29	1.49
6721020--6721213	53	3.6	53	87	6	282	52	4	19	24	1.63
6721173--6721212	15	2.6	16	84	11	57	60	0	17	22	1.37
6721025--6721222	108	1.8	104	86	5	270	52	4	19	24	1.63
6727242--6727745	254	2.0	251	91	2	823	24	19	15	39	1.91
6729061--6729091	13	2.4	13	94	0	53	48	0	0	51	1.00
6732430--6732522	40	2.3	40	87	7	127	16	22	23	37	1.93
6742167--6742210	23	1.9	23	85	0	61	40	6	4	47	1.50
6751121--6751300	25	7.3	25	65	15	79	20	25	21	33	1.97
6753526--6754171	131	4.9	131	82	3	744	39	12	16	31	1.86
6753526--6754171	262	2.5	261	84	1	837	39	12	16	31	1.86
6757284--6757362	37	2.1	37	90	0	122	24	30	20	25	1.98
6757481--6757844	49	7.6	49	92	3	573	29	29	7	32	1.85
6763433--6763483	23	2.2	23	85	0	66	47	3	0	49	1.20
6764624--6764650	7	3.9	7	100	0	54	29	44	0	25	1.54
6766304--6766342	20	2.0	20	90	10	62	43	0	2	53	1.14
6766683--6766712	8	3.6	8	91	8	51	26	0	0	73	0.84
6766845--6766874	8	3.6	8	91	8	51	26	0	0	73	0.84
6766613--6766937	162	2.0	161	99	0	641	40	9	5	44	1.60
6768261--6768357	10	10.1	10	72	23	52	71	1	26	1	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6768256--6768357	14	6.9	14	72	20	68	70	0	27	0	1.00
6768255--6768351	24	3.9	24	75	15	90	70	1	27	1	1.01
6771112--6771228	63	1.9	63	82	8	152	46	10	4	39	1.58
6771268--6771320	3	17.7	3	92	0	88	64	3	0	32	1.12
6771549--6771615	27	2.5	27	85	4	91	19	29	26	23	1.98
6777214--6777239	13	2.0	13	100	0	52	7	46	0	46	1.31
6779579--6779671	45	2.1	44	80	9	100	27	21	12	37	1.90
6781840--6781866	3	9.0	3	100	0	54	66	0	33	0	0.92
6785543--6785585	19	2.3	18	80	7	50	58	6	0	34	1.25
6785527--6785581	23	2.4	23	80	17	62	56	7	0	36	1.27
6786637--6786745	45	2.4	45	84	1	128	33	22	20	24	1.97
6786819--6786940	34	3.6	34	72	4	93	45	14	9	30	1.78
6790917--6790943	4	6.8	4	100	0	54	22	0	0	77	0.76
6791019--6791065	9	5.2	9	84	0	58	34	8	2	55	1.42
6791027--6791086	6	10.0	6	75	0	57	31	5	5	58	1.41
6791019--6791078	24	2.5	24	86	5	77	33	8	3	55	1.47
6793507--6793531	12	2.1	12	100	0	50	24	32	8	36	1.84
6794033--6795030	132	7.6	132	88	2	1405	29	18	24	27	1.98
6795047--6795141	44	2.1	45	84	5	122	30	17	22	29	1.97
6796673--6796719	9	5.2	9	84	0	58	34	8	2	55	1.42
6796681--6796740	6	10.0	6	75	0	57	31	5	5	58	1.41
6796673--6796732	24	2.5	24	86	5	77	33	8	3	55	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6803848--6803934	34	2.5	35	81	3	95	36	29	6	26	1.82
6803912--6803961	23	2.2	22	85	3	64	48	24	0	28	1.52
6805648--6805703	22	2.7	21	83	8	69	44	35	5	14	1.68
6805643--6805680	14	2.7	14	87	0	58	36	39	7	15	1.77
6808942--6808975	17	2.1	16	88	5	50	14	0	2	82	0.79
6808934--6808975	8	5.0	8	86	11	57	14	2	2	80	0.90
6809967--6810006	20	2.0	20	85	9	55	35	7	5	52	1.51
6819194--6819248	22	2.4	22	78	9	56	32	5	7	54	1.51
6821234--6821277	20	2.2	20	88	8	63	25	6	4	63	1.38
6821991--6822068	41	1.9	41	86	5	113	37	0	3	58	1.16
6825777--6825821	24	1.9	23	86	4	63	31	2	0	66	1.04
6827787--6827813	3	9.0	3	100	0	54	66	0	0	33	0.92
6832819--6832913	47	2.0	47	97	2	183	57	16	6	18	1.60
6835954--6835994	6	6.7	6	91	2	64	70	0	29	0	0.87
6835953--6835988	18	2.0	18	100	0	72	72	0	27	0	0.85
6836332--6836370	20	2.1	19	85	9	53	56	5	0	38	1.22
6840077--6840192	30	3.9	30	82	3	119	30	22	3	43	1.69
6840074--6840206	30	4.5	29	72	16	85	32	20	3	43	1.69
6840427--6840469	18	2.4	18	84	0	50	67	0	32	0	0.91
6852573--6852716	71	2.0	72	86	4	202	30	13	21	34	1.92
6852573--6852748	71	2.5	69	83	3	201	28	14	23	33	1.94
6852748--6852941	71	2.7	69	79	10	185	29	12	20	37	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6852573--6853064	193	2.5	193	92	2	794	28	13	21	35	1.92
6852913--6853118	54	3.5	54	68	17	169	28	14	20	36	1.92
6852836--6853154	123	2.6	123	92	1	512	27	14	21	37	1.92
6853138--6853171	16	2.1	17	88	5	52	17	11	5	64	1.45
6853077--6853489	193	2.2	181	82	12	475	27	17	18	37	1.93
6853077--6853335	91	2.9	88	82	10	309	26	18	18	37	1.93
6853322--6853355	15	2.5	13	82	17	50	11	8	8	70	1.34
6853327--6853355	15	1.9	15	100	0	58	13	6	6	72	1.26
6853433--6853652	54	4.1	54	84	10	297	29	15	17	36	1.91
6853894--6853928	14	2.4	15	90	4	54	68	2	0	28	1.04
6853924--6854039	30	3.9	30	81	3	119	31	22	2	43	1.67
6853921--6854053	30	4.5	29	72	16	85	34	20	2	42	1.64
6854582--6854636	24	2.3	24	93	0	101	65	9	25	0	1.22
6855220--6855267	17	2.8	17	76	23	55	31	16	10	41	1.82
6855331--6855442	17	6.4	16	71	14	71	33	12	10	42	1.77
6855373--6855414	20	2.0	20	86	4	57	45	11	9	33	1.73
6855471--6855512	19	2.2	19	95	0	75	45	4	4	45	1.45
6855565--6855642	19	4.1	20	80	15	94	35	14	8	41	1.77
6855574--6855660	38	2.3	38	83	11	108	33	11	10	44	1.74
6855575--6855643	17	3.7	18	81	12	77	34	13	10	42	1.77
6858287--6858631	172	2.0	172	97	1	647	30	13	17	39	1.88
6862041--6862083	19	2.2	20	87	4	61	62	0	0	37	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6863811--6863854	23	1.9	23	90	0	70	54	0	0	45	0.99
6867215--6867256	22	1.9	22	90	0	66	59	16	14	9	1.60
6872700--6872740	21	2.0	21	95	4	75	36	0	0	63	0.95
6872704--6872748	20	2.2	21	84	4	56	33	0	6	60	1.23
6873545--6873577	12	2.8	12	86	4	50	27	0	9	63	1.24
6873799--6874036	43	5.7	43	81	7	256	24	20	26	27	1.99
6873799--6874036	87	2.8	85	82	8	247	24	20	26	27	1.99
6873903--6874024	37	3.1	37	85	8	145	21	22	30	25	1.99
6875640--6875685	24	1.9	24	83	16	60	32	0	17	50	1.47
6875692--6875735	10	4.4	11	78	18	51	40	0	9	50	1.34
6875694--6875736	18	2.3	19	80	8	52	39	0	9	51	1.34
6875847--6875957	37	2.8	40	73	12	104	27	16	23	33	1.95
6876967--6877005	14	2.8	14	84	0	51	35	12	23	28	1.91
6877400--6877435	18	1.9	18	88	5	54	58	2	0	38	1.13
6877429--6877483	13	4.4	13	76	13	53	49	0	0	50	1.00
6877424--6877483	18	3.2	19	76	23	56	50	0	0	50	1.00
6885101--6885135	8	4.1	8	86	13	52	74	0	25	0	0.82
6887172--6887207	16	2.1	18	90	10	58	22	0	0	77	0.76
6905227--6905260	16	2.1	16	88	0	50	20	14	20	44	1.87
6905645--6905688	21	2.1	21	100	0	88	31	11	31	25	1.91
6911478--6912171	132	5.3	132	83	4	845	29	19	24	26	1.99
6911478--6912169	254	2.7	258	86	3	921	29	19	24	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6912322--6912505	43	4.3	43	86	3	199	28	27	18	25	1.98
6912577--6912610	16	2.1	16	88	0	50	61	2	0	35	1.11
6912844--6912873	15	2.0	15	93	0	51	16	33	0	50	1.46
6914038--6914067	14	2.1	14	100	0	60	33	0	43	23	1.54
6917183--6917283	47	2.2	46	90	3	157	43	0	7	48	1.32
6917780--6917817	14	2.7	15	84	12	53	44	28	0	26	1.54
6918052--6918094	22	2.0	21	81	4	50	32	44	2	20	1.65
6918098--6918141	17	2.7	17	89	6	65	43	27	0	29	1.55
6917609--6918192	323	1.8	312	81	9	712	40	28	2	28	1.70
6920087--6920128	3	14.0	3	100	0	84	33	0	0	66	0.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126