genome.fa.s14.2.7.7.80.10.50.1000.96.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr12
Parameters: 2 7 7 80 10 50 1000
Length:  39383930

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  96  of  126  ( 15042 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29234894--29234952	22	2.7	22	84	7	68	33	0	38	27	1.57
29235198--29235242	6	7.2	6	83	16	56	77	0	2	20	0.87
29235187--29235247	17	3.7	15	77	16	50	78	3	1	16	0.96
29235193--29235236	17	2.4	19	88	7	65	79	2	2	15	0.93
29235198--29235266	29	2.4	29	76	11	70	73	0	4	21	1.00
29242426--29242495	35	2.0	34	94	2	122	20	15	21	41	1.89
29257056--29257118	18	3.4	18	97	2	117	39	1	0	58	1.07
29260113--29260168	26	2.2	26	93	0	94	44	14	17	23	1.85
29263237--29263457	90	2.4	90	84	2	273	42	12	13	31	1.82
29264316--29264346	3	10.3	3	100	0	62	0	32	0	67	0.91
29269747--29269807	28	2.2	29	85	8	90	31	19	16	32	1.94
29269759--29269818	15	4.1	15	76	8	61	28	18	20	33	1.96
29269833--29269988	24	6.6	24	70	10	72	35	16	19	28	1.93
29269962--29270126	58	2.8	59	83	4	210	37	13	16	32	1.88
29270104--29270149	18	2.6	17	83	10	56	36	10	19	32	1.87
29270302--29270347	16	2.9	16	80	0	56	26	19	23	30	1.98
29270337--29270405	16	4.5	16	82	7	90	20	10	30	39	1.85
29270334--29270405	31	2.4	30	85	2	99	19	9	33	37	1.85
29272499--29272536	20	1.9	20	88	0	58	57	0	7	34	1.28
29278857--29279048	77	2.5	77	100	0	384	38	14	19	27	1.91
29279335--29279367	16	2.0	17	88	5	50	48	0	27	24	1.51
29283421--29283461	20	2.0	20	90	0	64	46	2	17	34	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29284330--29284533	40	5.1	40	81	0	237	41	25	18	15	1.89
29293332--29293371	19	2.0	20	85	4	55	45	5	7	42	1.54
29295478--29295549	26	2.7	27	84	6	92	63	5	4	26	1.34
29295475--29295708	120	1.9	122	95	3	429	60	5	5	27	1.43
29295601--29295671	26	2.6	27	84	4	81	63	7	2	26	1.34
29295591--29296019	212	2.0	212	100	0	858	54	5	8	31	1.53
29295813--29295883	26	2.6	27	84	4	81	63	7	2	26	1.34
29296636--29296727	43	2.1	43	83	0	112	6	17	18	57	1.60
29297304--29297345	22	2.0	22	85	4	59	54	23	4	16	1.61
29312623--29312762	75	1.9	74	82	5	174	47	19	2	30	1.64
29313021--29313074	12	4.2	12	77	13	63	46	9	1	42	1.46
29313529--29313560	15	2.1	15	100	0	64	46	0	6	46	1.27
29317456--29317535	30	2.7	30	82	1	99	38	20	16	25	1.92
29321254--29321328	6	12.5	6	86	0	87	17	25	1	56	1.49
29321254--29321328	18	4.2	18	89	0	96	17	25	1	56	1.49
29321253--29321324	24	3.0	24	93	0	126	16	23	1	58	1.46
29332055--29332111	21	2.7	21	75	8	62	17	31	29	21	1.96
29332216--29332263	21	2.3	21	85	0	69	14	35	25	25	1.94
29335510--29335537	3	9.3	3	100	0	56	67	0	32	0	0.91
29349902--29350059	51	3.0	51	82	8	183	32	18	22	26	1.97
29349899--29350084	53	3.5	52	80	9	207	30	18	24	25	1.98
29353325--29353385	28	2.1	29	85	11	81	26	8	0	65	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29353338--29353409	14	4.8	15	70	21	53	25	9	0	65	1.23
29358414--29358444	9	3.4	9	90	0	53	25	12	22	38	1.90
29358728--29358787	30	2.0	31	86	3	86	20	40	0	40	1.52
29364007--29364053	20	2.3	20	89	7	69	23	21	25	29	1.99
29365717--29365775	25	2.4	24	78	15	66	32	1	6	59	1.34
29365719--29365775	26	2.1	25	84	12	69	33	1	7	57	1.36
29365894--29365943	20	2.5	20	87	6	66	26	30	26	18	1.98
29373956--29373986	16	1.9	16	100	0	62	51	6	16	25	1.68
29374405--29374457	24	2.2	24	96	0	97	33	3	49	13	1.60
29376045--29376376	168	2.0	168	95	0	601	29	15	18	36	1.91
29380341--29380431	31	2.8	32	90	5	139	70	10	9	8	1.35
29380344--29380444	31	3.2	31	82	10	123	69	9	10	9	1.38
29381347--29381380	13	2.5	14	90	4	52	70	0	14	14	1.17
29382615--29382910	87	3.4	87	86	0	403	28	24	22	23	1.99
29382759--29382897	44	3.2	44	68	8	120	22	24	27	25	2.00
29383178--29383317	44	3.1	44	72	4	136	30	20	22	27	1.98
29388249--29388289	17	2.5	17	88	4	57	73	0	17	9	1.09
29392461--29392502	18	2.2	19	87	8	59	35	4	11	47	1.61
29393147--29393222	9	8.4	9	71	15	59	28	2	1	67	1.12
29393142--29393191	19	2.7	19	84	3	75	32	4	0	64	1.12
29393142--29393197	28	2.1	26	83	6	67	32	3	0	64	1.11
29393618--29393662	22	2.1	21	91	4	72	11	17	26	44	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29393733--29393937	42	4.8	43	84	5	256	27	32	18	22	1.97
29393935--29393964	16	1.9	16	93	6	53	50	3	0	46	1.18
29394210--29394300	43	2.1	43	87	2	130	43	9	10	35	1.73
29398863--29398982	41	3.0	41	95	1	215	29	28	24	18	1.98
29399058--29399151	40	2.4	40	89	1	136	20	19	23	37	1.94
29399157--29399182	12	2.2	12	100	0	52	46	30	15	7	1.74
29399247--29399294	21	2.3	21	82	7	53	35	8	4	52	1.51
29411067--29412025	93	10.3	93	99	0	1857	29	28	18	23	1.98
29412451--29412510	30	2.0	30	90	0	93	30	25	8	36	1.85
29416642--29416693	15	3.5	15	81	5	52	75	5	3	15	1.14
29417406--29417471	23	2.7	25	79	11	64	33	12	4	50	1.60
29418980--29419028	24	2.0	24	100	0	98	42	4	0	53	1.20
29418987--29419027	12	3.4	12	79	0	55	39	4	0	56	1.21
29419633--29419850	41	5.3	41	89	0	330	20	22	21	34	1.96
29421875--29421954	32	2.5	32	80	6	92	27	2	20	50	1.61
29422679--29422734	18	3.2	16	80	17	51	78	7	0	14	0.95
29428819--29428857	16	2.4	16	84	12	53	20	0	25	53	1.45
29428819--29428857	17	2.4	17	87	8	55	20	0	25	53	1.45
29428833--29428890	25	2.4	25	80	5	66	17	0	25	56	1.40
29428864--29428910	22	2.1	22	84	0	58	14	0	34	51	1.43
29428998--29429030	16	2.0	17	94	5	59	39	0	24	36	1.56
29430187--29430238	26	2.0	26	96	0	95	23	25	26	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29433121--29433155	18	1.9	18	94	0	61	40	2	28	28	1.71
29434754--29434888	48	2.8	46	85	6	164	52	5	10	31	1.57
29435022--29435070	21	2.3	23	80	16	61	40	0	16	42	1.48
29436673--29437088	144	2.9	144	91	1	656	29	24	15	31	1.95
29437058--29437119	31	2.0	31	93	0	106	30	11	20	37	1.88
29437089--29437421	144	2.3	144	86	3	463	27	22	17	32	1.96
29452816--29452870	26	2.1	26	96	0	101	30	9	10	49	1.69
29471880--29472002	43	2.8	45	81	4	128	27	16	26	30	1.97
29480178--29480223	15	3.1	15	76	17	51	36	6	2	54	1.39
29483348--29483372	11	2.3	11	100	0	50	0	8	0	92	0.40
29483561--29483625	31	2.1	32	83	13	82	43	1	6	49	1.37
29483860--29483927	35	2.0	35	88	2	102	42	8	11	36	1.73
29500356--29500394	16	2.4	16	91	0	69	35	5	23	35	1.77
29502327--29502369	19	2.2	19	83	8	50	37	16	11	34	1.85
29506757--29507097	46	7.8	45	71	15	200	32	20	20	26	1.98
29506927--29507130	43	4.7	43	75	10	164	30	23	20	25	1.98
29506970--29507175	87	2.4	83	89	4	306	30	21	22	25	1.99
29506970--29507163	43	4.6	42	71	9	119	29	21	22	26	1.99
29508173--29508230	3	19.3	3	78	7	64	29	5	1	63	1.25
29508666--29508702	18	2.1	18	89	0	56	32	5	5	56	1.45
29508664--29508702	20	2.1	18	90	9	60	33	5	5	56	1.43
29516334--29516366	16	2.1	16	94	0	57	33	6	3	57	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29517785--29517819	17	2.1	17	89	10	54	25	2	0	71	1.00
29522487--29522558	21	3.0	24	76	19	71	41	0	1	56	1.07
29522849--29522908	31	1.9	31	86	0	84	26	15	13	45	1.83
29527386--29527410	13	1.9	13	100	0	50	44	32	8	16	1.76
29529583--29529627	22	2.1	21	91	4	72	11	17	26	44	1.82
29529698--29529902	42	4.8	43	84	5	256	27	32	18	22	1.97
29530171--29530261	43	2.1	43	87	2	130	43	9	10	35	1.73
29535124--29535368	41	6.0	41	92	0	382	27	28	23	20	1.99
29535422--29535554	40	3.3	41	79	7	141	24	22	20	32	1.98
29535543--29535568	12	2.2	12	100	0	52	46	30	15	7	1.74

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126