genome.fa.s14.2.7.7.80.10.50.1000.14.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr12
Parameters: 2 7 7 80 10 50 1000
Length:  39383930

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  14  of  126  ( 15042 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3915657--3915711	11	5.0	11	78	8	67	60	0	1	38	1.08
3915641--3915711	33	2.2	33	92	5	117	59	0	2	38	1.12
3918910--3918974	33	2.0	33	81	6	78	32	6	20	41	1.77
3919090--3919132	8	5.5	8	91	5	70	23	2	0	74	0.93
3919090--3919132	15	2.8	15	92	3	68	23	2	0	74	0.93
3929464--3929506	23	2.0	21	90	9	68	46	11	0	41	1.40
3934769--3934793	13	1.9	13	100	0	50	44	8	24	24	1.80
3935965--3936030	33	2.0	33	82	5	80	31	6	22	39	1.79
3939143--3939185	22	2.0	22	90	0	68	46	16	2	34	1.60
3942877--3942919	22	2.0	22	90	0	68	46	16	2	34	1.60
3952843--3953678	418	2.0	418	99	0	1636	26	27	16	29	1.97
3962057--3962117	12	5.6	11	75	16	56	36	3	0	60	1.13
3962164--3962224	31	2.0	31	90	6	97	37	1	0	60	1.07
3973505--3973639	18	8.0	17	67	19	77	40	0	2	56	1.17
3973798--3973891	46	2.1	44	88	4	134	38	25	4	31	1.75
3974197--3974227	6	5.2	6	100	0	62	48	35	0	16	1.46
3974197--3974234	18	2.1	18	90	0	58	47	39	0	13	1.42
3978017--3978070	27	2.0	27	100	0	108	48	7	29	14	1.71
3999932--3999996	33	2.0	33	84	0	85	40	23	4	32	1.75
4005178--4005229	3	17.3	3	83	0	59	36	3	1	57	1.28
4005178--4005229	21	2.5	21	87	0	77	36	3	1	57	1.28
4005412--4005500	42	2.1	43	80	2	99	32	5	7	53	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4006332--4006381	26	1.9	26	100	0	100	28	32	4	36	1.76
4013543--4013612	33	2.2	32	84	2	86	64	1	0	34	1.03
4013622--4013651	11	2.6	12	89	10	53	50	0	0	50	1.00
4013626--4013652	11	2.5	11	100	0	54	51	0	0	48	1.00
4013625--4013711	41	2.2	40	82	15	108	59	0	2	37	1.10
4013667--4013691	11	2.3	11	100	0	50	52	0	8	40	1.31
4018965--4019000	16	2.2	16	90	9	56	77	0	2	19	0.88
4019133--4019197	33	2.0	33	87	0	94	43	21	4	30	1.73
4024854--4024906	20	2.7	19	77	8	61	52	1	0	45	1.11
4028395--4028439	24	1.9	23	82	13	56	31	22	0	46	1.52
4028676--4028711	16	2.2	16	90	9	56	19	2	0	77	0.88
4030533--4030621	33	2.7	33	83	0	124	32	5	23	38	1.78
4037839--4038270	51	8.5	50	75	9	340	26	15	26	31	1.96
4037835--4038116	102	2.8	102	89	1	406	27	15	26	30	1.96
4037885--4038223	151	2.2	153	83	5	402	26	15	26	30	1.96
4041473--4041524	20	2.7	19	74	11	52	44	0	3	51	1.19
4045089--4045136	13	3.6	13	75	13	53	81	4	12	2	0.93
4064483--4064521	17	2.4	16	84	12	53	48	2	10	38	1.51
4068873--4068923	21	2.4	21	100	0	102	47	11	9	31	1.73
4068865--4068927	21	2.7	25	78	19	89	47	9	9	33	1.68
4069117--4069188	32	2.3	30	83	9	83	40	9	11	38	1.74
4070018--4070096	29	2.6	29	82	6	86	34	2	12	50	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4070018--4070097	31	2.7	29	84	5	88	33	2	12	51	1.53
4072675--4072712	16	2.4	16	86	8	51	42	0	2	55	1.14
4074295--4074325	16	1.9	16	93	0	53	22	3	16	58	1.52
4078257--4078296	4	10.0	4	100	0	80	75	0	25	0	0.81
4080408--4080454	20	2.2	22	85	7	62	53	0	0	46	1.00
4083455--4083513	32	1.9	31	86	6	84	32	6	15	45	1.72
4086860--4086904	21	2.1	21	83	0	54	37	0	2	60	1.09
4086980--4087019	19	2.2	18	90	4	62	57	5	0	37	1.21
4096084--4096122	20	2.0	20	85	10	53	69	0	2	28	1.02
4104473--4104628	42	3.7	42	77	16	169	30	26	18	24	1.98
4111125--4111280	42	3.7	42	77	16	169	30	26	18	24	1.98
4113799--4114202	202	2.0	202	100	0	808	24	16	17	41	1.89
4116751--4116849	32	3.1	32	85	4	128	39	13	9	38	1.76
4121168--4121222	24	2.2	26	81	12	71	45	0	1	52	1.11
4122952--4122983	7	4.6	7	96	0	55	28	50	9	12	1.71
4122980--4123215	7	34.1	7	78	9	137	41	47	1	9	1.47
4122950--4123237	14	20.7	14	76	10	198	40	45	3	10	1.53
4122942--4123185	21	11.3	22	73	13	66	40	45	2	11	1.55
4122942--4123237	28	10.6	28	75	10	223	41	45	3	10	1.53
4122980--4123031	6	8.2	6	80	6	50	42	55	0	1	1.10
4123517--4124060	270	2.0	271	96	1	1011	42	11	15	30	1.82
4124811--4124870	31	1.9	31	86	0	84	28	18	23	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4126105--4126138	17	2.0	17	94	0	59	47	2	0	50	1.16
4127614--4127668	23	2.4	23	90	0	92	40	14	3	41	1.63
4133127--4133674	274	2.0	274	99	0	1087	38	13	25	22	1.91
4136588--4136621	14	2.4	14	90	0	50	50	2	2	44	1.32
4138684--4138724	21	2.0	21	90	9	66	48	21	17	12	1.79
4138945--4138970	8	3.2	8	100	0	52	50	0	23	26	1.50
4139611--4139694	40	2.1	40	100	0	168	38	38	11	11	1.79
4140446--4140506	28	2.2	29	77	11	74	50	13	14	21	1.76
4145589--4145644	22	2.5	23	82	2	69	51	1	1	44	1.22
4145620--4145659	16	2.5	16	91	0	62	47	2	7	42	1.45
4145662--4145781	59	2.1	59	88	1	188	42	5	8	44	1.56
4145847--4145890	24	1.9	24	90	9	74	61	2	0	36	1.09
4147422--4147456	10	3.4	10	84	7	52	28	0	0	71	0.86
4148771--4148809	2	19.5	2	100	0	78	0	51	0	48	1.00
4150557--4150595	17	2.4	17	86	4	53	5	10	20	64	1.44
4150675--4150741	16	4.3	15	74	9	62	26	23	31	17	1.97
4158211--4158247	14	2.6	14	95	0	65	51	8	13	27	1.69
4158211--4158257	14	3.4	14	88	2	51	51	10	12	25	1.72
4159714--4159742	13	2.2	13	100	0	58	20	44	0	34	1.52
4161701--4161752	24	2.2	24	82	6	61	55	3	5	34	1.42
4169524--4169554	13	2.3	14	94	5	55	22	0	0	77	0.77
4174673--4174726	21	2.5	21	93	3	90	25	11	18	44	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4174773--4174815	22	2.0	22	100	0	86	37	4	30	27	1.77
4175079--4175194	59	2.0	60	84	1	153	34	6	7	51	1.55
4175208--4175250	22	1.9	23	85	4	61	34	4	0	60	1.17
4210924--4210965	16	2.7	16	85	3	59	33	2	0	64	1.07
4214516--4214561	22	2.0	22	87	8	65	43	0	4	52	1.21
4224970--4225262	154	1.9	154	83	0	379	43	9	8	39	1.67
4226239--4226263	13	1.9	13	100	0	50	32	4	40	24	1.73
4235033--4235059	6	4.5	6	100	0	54	33	0	66	0	0.92
4235123--4235157	18	1.9	18	94	0	61	42	5	51	0	1.25
4237320--4237348	15	1.9	15	100	0	58	27	20	3	48	1.66
4240893--4240980	45	2.0	45	86	0	122	40	18	25	15	1.90
4245817--4245843	3	9.0	3	100	0	54	0	33	33	33	1.58
4259199--4259486	95	3.0	95	100	0	576	37	22	10	29	1.87
4271374--4271425	17	3.1	17	73	15	63	61	1	0	36	1.07
4271375--4271425	16	3.1	16	73	15	59	62	1	0	35	1.06
4272492--4272521	5	6.0	5	100	0	60	20	40	20	20	1.92
4282894--4282918	12	2.1	12	100	0	50	52	8	0	40	1.31
4283179--4283217	15	2.7	15	88	4	53	51	0	0	48	1.00
4284264--4284467	109	1.9	109	82	2	257	44	7	19	28	1.78
4285092--4285130	16	2.4	17	86	4	53	38	2	2	56	1.27
4285116--4285165	24	2.2	24	85	7	68	26	12	4	58	1.51
4288219--4288285	29	2.3	28	80	10	73	44	11	5	37	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4291459--4291503	21	2.1	21	95	0	81	44	22	4	28	1.72
4295952--4296020	31	2.3	31	85	7	90	52	5	2	39	1.41
4309477--4309518	21	2.0	21	86	9	59	21	4	33	40	1.74
4315179--4315401	101	2.2	101	86	1	295	30	17	24	26	1.97
4317226--4317267	18	2.3	19	80	12	52	47	0	7	45	1.30
4322541--4322592	16	3.2	16	94	0	95	25	0	34	40	1.56
4322573--4322663	45	2.0	45	85	2	121	27	6	28	37	1.82
4322808--4322862	15	3.4	16	80	16	53	54	1	0	43	1.10
4322814--4322862	16	2.9	18	80	20	61	55	0	0	44	0.99
4323065--4323099	18	2.0	17	88	5	52	54	0	0	45	0.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126