genome.fa.s14.2.7.7.80.10.50.1000.114.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr12
Parameters: 2 7 7 80 10 50 1000
Length:  39383930

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  114  of  126  ( 15042 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35062497--35062646	40	3.8	40	83	5	169	26	28	21	24	1.99
35070320--35070381	33	2.0	31	85	14	85	46	12	1	38	1.52
35072044--35072088	13	3.6	12	85	14	56	13	17	15	53	1.73
35081261--35081306	2	23.0	2	100	0	92	0	0	50	50	1.00
35084528--35084562	13	2.7	13	90	0	52	40	0	14	45	1.45
35095924--35096009	40	2.2	40	85	2	111	44	3	18	33	1.67
35095915--35095983	13	5.2	13	73	3	57	46	2	20	30	1.65
35095915--35096024	53	2.1	53	83	6	134	45	2	19	32	1.64
35102016--35102133	20	5.9	20	73	5	87	35	18	29	16	1.93
35102048--35102133	40	2.2	40	82	0	109	37	17	29	16	1.91
35104683--35104735	26	2.0	26	85	0	70	24	18	32	24	1.97
35107093--35107126	16	2.2	15	89	5	50	0	14	5	79	0.91
35112355--35112420	25	2.6	25	85	9	80	19	16	6	57	1.60
35113500--35113592	7	13.6	7	72	15	52	78	2	11	7	1.04
35113475--35113554	21	3.7	21	72	12	72	77	3	6	12	1.09
35113529--35113563	15	2.2	16	90	5	54	80	2	2	14	0.95
35113476--35113566	44	2.0	45	85	6	114	78	3	6	12	1.07
35113559--35113595	12	3.1	12	88	0	56	75	2	21	0	0.92
35113559--35113592	6	5.7	6	85	0	50	79	2	17	0	0.86
35116179--35116442	85	3.1	85	73	12	286	29	18	24	27	1.98
35116145--35116495	172	2.0	172	90	0	558	31	18	23	25	1.98
35116148--35116410	87	3.1	82	73	13	235	31	18	23	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35116145--35116574	172	2.5	171	82	4	400	30	20	23	25	1.98
35116289--35117095	216	3.7	216	90	1	1240	30	19	23	26	1.98
35116143--35116927	388	2.0	386	79	4	846	30	19	23	25	1.98
35116873--35116967	44	2.2	43	88	5	138	31	20	27	21	1.97
35117027--35117115	41	2.2	41	91	0	142	29	19	15	35	1.93
35117971--35118003	15	2.1	16	88	5	50	3	15	6	75	1.11
35118679--35118711	17	2.1	16	88	11	50	27	0	9	63	1.24
35129749--35129774	9	2.9	9	100	0	52	19	0	11	69	1.18
35134307--35134355	25	2.0	24	81	18	57	6	32	0	61	1.21
35151245--35151293	26	1.9	26	87	4	73	36	16	4	42	1.67
35152766--35152810	22	2.0	22	87	8	65	26	0	20	53	1.46
35155618--35155748	43	3.0	44	73	8	131	30	18	22	28	1.97
35159502--35159612	19	5.8	19	81	0	132	36	13	9	41	1.76
35159502--35159605	38	2.7	38	90	0	163	37	11	8	42	1.72
35159976--35160235	132	2.0	131	78	6	274	28	24	19	27	1.98
35164127--35164172	24	1.9	24	86	8	67	10	23	17	47	1.79
35174510--35174591	42	2.0	42	82	4	103	29	24	14	31	1.95
35178571--35178710	65	2.2	63	77	10	138	30	26	18	25	1.98
35178635--35178778	50	2.9	50	76	3	164	29	29	19	22	1.98
35178930--35178961	16	2.0	16	93	0	55	43	9	6	40	1.62
35179854--35179987	27	5.0	27	91	0	214	41	23	17	17	1.90
35180158--35180238	26	3.1	26	90	0	126	18	19	24	37	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35183536--35183593	20	2.9	20	81	0	62	22	29	0	48	1.51
35187686--35188713	40	25.7	40	99	0	2011	30	20	27	22	1.98
35196397--35196579	40	4.6	39	81	6	170	24	20	27	26	1.99
35196433--35196614	79	2.3	80	79	3	190	26	20	27	25	1.99
35199675--35199833	40	4.0	40	85	3	221	35	16	29	18	1.93
35199687--35199832	20	7.3	20	66	9	64	35	17	28	18	1.93
35204680--35205291	334	1.8	334	100	0	1224	35	11	18	34	1.87
35206498--35206906	151	2.7	150	82	2	491	24	22	32	21	1.98
35214340--35214387	7	6.7	7	77	13	53	20	2	2	75	1.02
35214340--35214387	21	2.2	22	88	3	71	20	2	2	75	1.02
35215794--35215822	12	2.4	12	100	0	58	17	51	17	13	1.76
35215970--35216005	18	1.9	19	88	5	56	41	47	5	5	1.50
35216662--35216715	22	2.5	21	76	5	54	37	1	9	51	1.45
35216675--35216747	31	2.4	31	83	4	85	39	1	6	52	1.37
35227861--35227907	23	2.0	23	100	0	94	44	4	29	21	1.71
35230128--35230335	111	1.9	111	97	0	398	24	21	18	36	1.95
35243339--35243378	17	2.4	17	83	4	55	55	2	0	42	1.13
35243657--35243721	20	3.2	20	75	14	62	43	1	1	53	1.19
35243656--35243722	21	3.2	21	74	14	59	41	1	1	55	1.18
35251849--35251936	33	2.6	34	92	5	153	59	4	5	30	1.41
35251849--35251936	32	2.7	33	94	3	151	59	4	5	30	1.41
35258567--35258743	27	6.6	27	79	5	135	44	20	12	22	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35258575--35258707	27	5.0	27	80	7	146	43	19	12	24	1.86
35258576--35258757	53	3.4	52	81	5	161	43	20	12	23	1.85
35258672--35258757	27	3.2	27	83	3	102	47	20	10	20	1.79
35259226--35259290	34	1.9	34	81	6	78	24	23	26	26	2.00
35261173--35261212	21	1.9	21	94	0	71	45	20	35	0	1.51
35261214--35261285	30	2.4	29	86	6	101	45	19	13	20	1.84
35261571--35261657	42	2.0	42	84	2	111	32	16	22	28	1.96
35261585--35261791	43	4.8	43	83	1	229	28	16	23	30	1.96
35263095--35263162	31	2.2	30	80	12	77	17	7	7	67	1.38
35264575--35264617	20	2.1	21	83	12	54	46	18	0	34	1.50
35267821--35267869	23	2.2	22	85	3	62	16	0	10	73	1.09
35270932--35271095	87	1.9	86	85	6	224	29	16	19	34	1.94
35271743--35271793	24	2.2	23	89	6	77	9	17	31	41	1.82
35280659--35280701	18	2.4	18	80	7	52	44	2	0	53	1.13
35280992--35281105	57	2.0	57	93	3	194	36	17	7	38	1.77
35285447--35285486	20	2.0	20	85	9	55	37	10	12	40	1.77
35287185--35287217	17	1.9	17	88	11	50	33	12	27	27	1.92
35288351--35289122	386	2.0	386	98	0	1481	30	21	17	30	1.96
35294168--35294196	12	2.4	12	100	0	58	0	6	20	72	1.07
35305893--35305924	16	2.0	16	93	0	55	25	15	0	59	1.36
35306150--35306340	51	3.8	51	73	13	187	31	27	17	23	1.97
35306148--35306330	101	1.8	102	88	5	282	32	26	17	23	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35317131--35317166	18	1.9	19	88	5	56	25	19	11	44	1.83
35321770--35321803	18	1.9	17	88	5	50	52	14	0	32	1.42
35322413--35322495	21	4.0	21	76	3	89	44	18	21	15	1.86
35337539--35337800	39	6.7	40	88	7	337	24	27	22	25	2.00
35340908--35340956	24	2.0	24	92	0	80	26	16	32	24	1.96
35364421--35364453	15	2.2	15	94	0	57	36	15	9	39	1.79
35365458--35365508	24	2.1	24	85	0	66	33	17	25	23	1.96
35383626--35383810	50	3.8	49	81	4	178	27	22	28	21	1.99
35387181--35388046	442	1.9	447	88	3	1314	39	13	14	33	1.84
35391366--35391402	3	12.3	3	100	0	74	0	32	0	67	0.91
35393014--35393075	30	2.1	30	84	6	81	50	9	8	32	1.65
35394362--35394448	27	3.2	27	85	6	113	31	24	3	41	1.71
35394382--35394453	27	2.7	27	88	0	117	29	22	4	44	1.71
35408182--35408224	20	2.3	18	88	11	61	25	20	23	30	1.99
35414159--35414207	11	4.6	11	80	9	50	34	2	38	24	1.67
35417569--35417720	27	5.6	27	92	3	232	27	13	28	30	1.94
35417569--35417720	55	2.8	55	92	0	241	27	13	28	30	1.94
35420358--35420431	37	2.0	37	97	0	139	17	31	27	24	1.97
35423386--35423502	61	1.9	61	85	0	162	35	18	19	26	1.95
35436754--35436795	22	1.9	22	95	0	75	26	26	4	42	1.75
35438109--35438514	137	3.0	137	98	0	776	31	6	16	45	1.73
35460372--35460631	129	2.0	129	100	0	520	41	3	8	46	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35460905--35460944	12	3.2	12	96	3	71	67	15	7	10	1.41
35461530--35461672	74	1.9	74	100	0	286	32	16	22	27	1.96
35463755--35463932	27	6.6	27	82	3	178	29	28	15	26	1.96
35463776--35463931	82	1.9	81	88	3	233	28	28	16	26	1.97
35471890--35472067	27	6.6	27	84	3	205	29	28	15	26	1.96
35471911--35472066	82	1.9	81	88	3	233	29	28	15	26	1.96
35478151--35478213	24	2.6	22	80	16	63	9	17	3	69	1.28
35490920--35491008	13	6.7	13	76	10	90	43	1	20	34	1.59
35490920--35491008	40	2.2	40	95	0	160	43	1	20	34	1.59
35490929--35491004	27	2.8	26	82	9	82	44	1	17	36	1.57

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126