genome.fa.s14.2.7.7.80.10.50.1000.65.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr12
Parameters: 2 7 7 80 10 50 1000
Length:  39383930

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  65  of  126  ( 15042 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19049239--19049489	90	2.8	90	82	2	218	41	14	20	23	1.90
19049281--19049517	45	5.3	45	83	4	255	40	15	21	23	1.91
19049281--19049498	90	2.4	90	86	1	303	39	15	21	23	1.91
19053017--19053041	6	4.2	6	100	0	50	0	32	0	68	0.90
19056243--19056268	4	6.5	4	100	0	52	50	0	23	26	1.50
19061698--19061882	40	4.7	40	81	5	178	27	28	20	24	1.99
19061665--19061882	40	5.5	39	77	7	165	25	27	20	25	1.99
19069584--19069755	40	4.3	40	87	2	213	25	28	21	24	1.99
19069584--19069808	80	2.8	79	80	7	231	25	28	21	24	1.99
19069740--19069817	40	1.9	41	82	10	97	26	28	20	24	1.99
19080317--19080531	45	4.7	46	86	4	247	46	15	20	17	1.84
19082308--19082337	12	2.5	12	94	0	51	23	40	30	6	1.80
19090268--19090300	3	11.3	3	87	6	50	30	3	0	66	1.06
19094029--19094075	18	2.7	19	84	12	57	14	17	4	63	1.45
19094846--19094887	6	7.0	6	88	0	66	83	14	2	0	0.75
19096762--19096943	44	4.2	44	67	10	104	28	18	24	28	1.98
19096790--19096884	44	2.2	44	82	0	109	28	20	24	27	1.99
19098710--19098932	79	2.8	78	83	7	272	24	27	22	25	2.00
19098710--19098932	39	5.7	40	87	6	280	24	27	22	25	2.00
19106687--19106948	39	6.7	40	88	7	337	24	27	22	25	2.00
19109793--19109825	3	11.3	3	87	6	50	30	3	0	66	1.06
19111682--19111711	16	1.9	16	93	6	53	0	10	6	83	0.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19119809--19119872	31	2.1	31	96	0	119	54	9	20	15	1.68
19122031--19122077	23	2.0	23	91	0	76	31	14	10	42	1.80
19122168--19122286	51	2.3	51	82	2	141	33	17	8	40	1.80
19129048--19129073	9	2.9	9	100	0	52	69	7	11	11	1.37
19136282--19136396	27	4.3	27	80	10	119	40	13	20	26	1.89
19136280--19136407	54	2.3	55	82	4	152	37	13	21	28	1.91
19140227--19140349	40	3.1	39	84	5	165	30	24	19	26	1.98
19140240--19140365	40	3.2	39	81	4	103	33	23	16	26	1.96
19145881--19146026	50	2.9	50	77	4	132	23	27	21	28	1.99
19145981--19146089	56	2.0	54	87	3	155	27	27	16	28	1.97
19152212--19152396	79	2.3	82	84	7	238	25	27	22	24	2.00
19152193--19152396	40	5.1	40	82	8	238	25	27	22	25	2.00
19162226--19162277	27	1.9	27	84	0	68	65	1	25	7	1.30
19167575--19167923	44	8.0	43	71	10	192	28	23	17	30	1.97
19182112--19182145	5	6.8	5	93	0	59	38	17	0	44	1.49
19182952--19182990	17	2.4	17	82	4	53	71	5	0	23	1.05
19183196--19183229	4	8.2	4	93	6	59	23	29	0	47	1.52
19185360--19185402	22	1.9	23	85	4	61	37	4	6	51	1.50
19185726--19185751	11	2.4	11	100	0	52	26	0	0	73	0.84
19185894--19185938	16	2.8	16	86	3	54	8	20	22	48	1.76
19187474--19187510	19	1.9	19	88	0	56	18	0	8	72	1.08
19187563--19187595	17	1.9	17	93	0	57	45	3	0	51	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19188013--19188082	11	6.4	11	76	0	68	71	10	1	17	1.20
19188029--19188085	30	1.9	30	86	13	82	70	10	1	17	1.24
19188013--19188086	22	3.4	22	82	0	85	70	12	1	16	1.24
19188214--19188246	14	2.4	14	94	0	57	18	24	12	45	1.83
19188470--19188538	31	2.2	31	94	0	120	55	26	15	2	1.55
19201814--19201946	61	2.2	58	85	6	178	42	3	3	50	1.35
19202343--19202394	26	2.0	26	82	10	63	15	19	9	55	1.67
19215425--19215469	22	2.0	22	86	0	63	37	2	4	55	1.32
19218555--19218642	45	2.0	45	86	0	122	28	18	21	31	1.97
19233100--19233204	40	2.6	41	80	8	126	23	23	27	24	2.00
19240153--19240350	51	3.9	50	75	4	200	30	27	17	24	1.97
19240161--19240346	101	1.8	101	87	3	275	32	26	17	23	1.97
19242448--19242500	24	2.1	26	83	13	67	32	5	1	60	1.31
19242448--19242500	25	2.1	26	82	10	65	32	5	1	60	1.31
19245897--19245930	15	2.1	17	89	10	54	23	44	0	32	1.54
19247900--19247964	28	2.3	27	82	10	69	63	0	4	32	1.15
19248309--19248368	3	20.0	3	72	6	50	60	5	3	31	1.35
19248309--19248359	15	3.4	15	78	5	59	58	5	1	33	1.33
19252398--19252441	23	1.9	23	100	0	88	31	45	4	18	1.69
19252399--19252448	23	2.2	23	88	0	73	34	48	4	14	1.62
19257735--19257916	85	2.0	94	82	11	231	37	14	12	35	1.84
19259281--19259423	50	2.7	53	79	8	141	25	23	20	30	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19266359--19266442	41	2.0	41	86	4	116	26	30	14	28	1.95
19267516--19267566	20	2.7	20	75	6	52	68	1	0	29	1.00
19267539--19267577	20	2.0	20	85	10	53	61	7	2	28	1.37
19267760--19267785	10	2.6	10	100	0	52	23	7	0	69	1.14
19269962--19269995	16	2.1	16	94	0	59	61	0	0	38	0.96
19284668--19284701	17	2.0	17	88	0	50	29	20	14	35	1.93
19290549--19290612	33	2.0	33	84	3	85	54	10	3	31	1.51
19291771--19291799	14	2.0	15	93	6	51	62	6	3	27	1.37
19291819--19291947	24	5.7	23	78	16	117	51	2	7	38	1.44
19304719--19305006	150	1.9	150	97	0	549	23	11	20	44	1.84
19308568--19308714	41	3.6	41	91	0	231	29	19	26	25	1.98
19308691--19308784	26	3.6	25	91	5	152	22	18	34	25	1.96
19310129--19310306	27	6.6	27	84	3	205	29	28	15	26	1.96
19310150--19310305	82	1.9	81	88	3	233	29	28	15	26	1.96
19311923--19311954	14	2.3	14	100	0	64	34	15	6	43	1.72
19317492--19317549	30	1.9	30	100	0	116	41	15	17	25	1.89
19318583--19318608	11	2.4	11	100	0	52	53	19	7	19	1.68
19329008--19329037	10	3.0	10	100	0	60	70	0	10	20	1.16
19333308--19333489	29	6.3	29	73	11	108	25	25	12	36	1.91
19333420--19333516	28	3.4	29	76	17	96	29	21	10	38	1.87
19337627--19337671	24	2.0	23	87	12	67	31	22	13	33	1.92
19338161--19338285	43	2.9	43	86	1	162	25	20	3	51	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19338875--19338913	19	2.1	19	90	4	62	56	5	17	20	1.60
19339307--19339331	11	2.3	11	100	0	50	76	16	0	8	1.02
19342722--19342975	39	6.5	39	80	4	235	18	32	16	32	1.93
19342857--19342958	19	5.3	19	73	9	89	14	34	17	33	1.91
19342848--19342975	20	6.6	20	71	11	86	16	32	17	32	1.93
19342735--19342975	78	3.1	78	82	4	281	18	32	15	33	1.93
19346893--19346962	23	3.0	23	83	8	88	28	8	22	40	1.84
19354981--19355038	3	19.0	3	82	3	53	55	0	8	36	1.31
19367761--19367805	23	2.0	23	82	8	56	31	11	22	35	1.89
19375631--19375823	50	3.9	50	76	4	162	27	21	27	22	1.99
19376026--19376074	20	2.5	20	81	15	66	57	6	24	12	1.58
19385472--19385519	21	2.3	22	85	10	73	41	4	0	54	1.20
19385481--19385523	21	2.0	21	100	0	86	37	4	0	58	1.19
19390237--19390311	32	2.3	32	93	0	123	25	26	2	45	1.67
19394691--19394743	16	3.3	16	72	27	58	18	32	3	45	1.68
19394688--19394762	32	2.3	32	97	0	141	24	29	2	44	1.67
19396981--19397044	24	2.6	25	75	9	60	51	1	1	45	1.20
19397007--19397063	29	2.0	29	82	6	71	49	1	0	49	1.11
19397013--19397072	29	2.0	30	83	3	77	43	1	0	55	1.10
19400485--19400719	50	4.6	50	85	3	263	22	28	21	27	1.99
19400532--19400898	50	6.6	54	78	16	326	22	29	21	26	1.99
19400570--19400923	179	2.0	179	98	0	681	24	29	20	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19402995--19403043	25	1.9	26	84	12	66	57	12	10	20	1.64
19402997--19403051	24	2.3	24	76	17	60	58	9	9	23	1.58
19407110--19407163	20	2.8	20	91	2	92	59	11	9	20	1.59
19435030--19435059	8	3.8	8	95	0	51	76	6	3	13	1.11
19435546--19435594	23	2.1	24	85	11	66	36	4	0	59	1.17
19435546--19435593	22	2.1	23	81	11	55	37	4	0	58	1.18
19440067--19440105	19	2.0	20	90	5	62	33	10	17	38	1.84
19444307--19444447	50	2.8	50	81	6	178	26	22	29	21	1.99
19446102--19446152	24	2.1	24	92	0	84	33	11	25	29	1.91
19451956--19452013	29	2.0	29	89	0	89	24	20	39	15	1.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126