genome.fa.s14.2.7.7.80.10.50.1000.22.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr12
Parameters: 2 7 7 80 10 50 1000
Length:  39383930

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  22  of  126  ( 15042 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6458301--6458371	16	4.4	16	81	0	70	35	12	1	50	1.49
6458313--6458379	32	2.1	32	85	0	89	28	13	1	56	1.46
6458316--6458378	16	3.9	16	80	0	72	30	12	1	55	1.47
6458453--6458497	19	2.3	19	84	7	54	35	4	2	57	1.31
6458517--6458550	12	2.8	12	90	0	50	23	0	0	76	0.79
6464834--6464935	30	3.4	28	78	10	114	44	0	19	35	1.58
6464800--6464935	60	2.3	60	82	8	154	42	2	20	34	1.64
6468642--6468694	18	2.9	18	82	0	70	13	22	20	43	1.86
6473326--6473364	16	2.4	16	82	0	51	35	15	17	30	1.91
6489283--6489327	23	2.0	23	82	8	56	33	0	4	62	1.15
6490700--6490754	11	5.4	11	74	22	57	60	1	0	38	1.08
6490686--6490729	21	2.1	21	87	8	63	54	2	0	43	1.12
6490903--6490944	20	2.1	20	86	8	59	61	2	7	28	1.35
6492767--6492818	25	2.1	24	82	10	61	76	3	9	9	1.12
6514878--6514918	21	2.0	21	90	0	64	19	29	21	29	1.98
6517857--6517899	16	2.8	15	79	6	50	62	2	11	23	1.40
6525407--6525563	43	3.7	42	81	4	145	31	27	17	24	1.97
6525457--6525563	44	2.5	44	84	6	139	29	28	17	23	1.97
6527530--6527961	215	2.0	215	94	0	756	26	25	14	33	1.94
6531654--6531707	19	2.9	19	86	2	65	31	0	1	66	1.02
6531665--6531707	18	2.3	18	88	4	59	32	0	2	65	1.06
6532075--6532116	21	2.0	21	85	0	57	30	28	14	26	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6540949--6541002	27	1.9	27	85	14	74	64	3	1	29	1.21
6541371--6541400	4	7.5	4	100	0	60	76	0	0	23	0.78
6542167--6542217	27	2.0	26	84	7	68	37	0	3	58	1.16
6547676--6547713	19	2.0	19	100	0	76	36	0	21	42	1.53
6555309--6555355	23	2.0	23	95	0	85	31	4	10	53	1.55
6556268--6556310	22	2.0	22	86	8	63	39	18	16	25	1.91
6559871--6559933	14	4.5	14	82	7	74	60	4	14	20	1.52
6559798--6560022	117	1.9	117	86	1	317	44	16	16	23	1.87
6559900--6560177	83	3.2	84	80	9	285	38	19	15	25	1.91
6560094--6560865	78	10.1	77	87	5	965	31	22	18	27	1.97
6560844--6560878	14	2.5	14	95	0	61	57	2	20	20	1.54
6560767--6560938	91	1.9	91	92	0	290	34	19	19	26	1.96
6560869--6561010	72	1.9	73	90	2	223	30	19	17	31	1.95
6561007--6561041	14	2.5	14	95	0	61	57	2	20	20	1.54
6560690--6561516	163	4.9	165	80	11	863	34	20	18	26	1.96
6560623--6561966	254	5.6	251	79	13	1026	33	21	17	27	1.96
6560943--6561449	91	5.7	90	91	3	655	34	20	17	26	1.95
6561098--6561132	14	2.5	14	95	0	61	57	2	20	20	1.54
6561189--6561223	14	2.5	14	95	0	61	57	2	20	20	1.54
6561380--6561966	73	7.9	73	82	7	693	31	22	16	29	1.96
6561380--6561966	149	4.0	149	95	2	1017	31	22	16	29	1.96
6570911--6571028	30	3.9	30	85	2	132	22	4	47	26	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6570996--6571045	17	2.9	18	88	8	61	26	4	50	20	1.66
6571006--6571045	17	2.3	17	95	4	71	30	5	47	17	1.69
6570976--6571075	47	2.1	47	94	1	173	24	4	49	23	1.67
6571024--6571090	30	2.3	30	94	2	118	23	2	49	23	1.64
6571456--6571655	100	2.0	100	100	0	400	28	13	16	43	1.84
6574431--6574455	5	5.0	5	100	0	50	80	0	20	0	0.72
6575254--6575288	16	2.2	17	90	10	56	8	0	11	80	0.92
6577774--6577868	49	1.9	49	84	0	127	24	14	30	30	1.95
6577777--6577879	49	2.1	49	81	0	116	24	14	29	32	1.95
6580040--6580091	25	2.1	25	100	0	104	28	11	15	44	1.81
6588428--6588468	21	2.0	21	81	18	50	31	19	26	21	1.97
6590520--6590569	20	2.5	20	78	15	59	34	10	10	46	1.71
6590564--6590607	20	2.2	20	88	4	63	52	2	6	38	1.41
6590606--6590636	9	3.4	9	90	0	53	29	0	0	70	0.87
6591097--6591165	20	3.4	20	84	6	86	55	4	17	23	1.60
6591116--6591182	20	3.2	21	79	10	57	58	2	16	22	1.52
6592266--6592334	20	3.4	20	84	6	86	55	4	17	23	1.60
6592285--6592351	20	3.2	21	79	10	57	58	2	16	22	1.52
6593507--6593534	13	2.2	13	100	0	56	14	17	7	60	1.55
6592577--6594385	618	2.9	618	87	4	2533	33	16	15	34	1.90
6599156--6599195	21	1.9	21	94	0	71	52	12	10	25	1.70
6601259--6601296	20	1.9	20	88	0	58	13	26	34	26	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6604123--6604158	18	2.0	18	89	10	56	66	11	0	22	1.22
6604960--6604993	14	2.5	14	95	4	61	76	2	14	5	1.09
6605538--6605952	87	4.8	87	80	0	490	23	20	22	33	1.97
6605538--6605952	174	2.4	174	88	1	618	23	20	22	33	1.97
6610402--6610432	11	2.8	11	100	0	62	58	12	9	19	1.62
6618250--6618284	18	2.0	17	88	5	52	65	11	0	22	1.24
6619073--6619104	14	2.2	15	94	5	57	75	0	12	12	1.06
6620258--6620308	24	2.1	24	96	0	93	43	0	17	39	1.49
6621197--6621280	37	2.3	37	89	0	123	40	20	10	28	1.86
6625166--6625204	16	2.4	16	95	0	69	28	41	12	17	1.87
6631579--6631668	38	2.4	38	82	0	99	20	24	38	16	1.92
6640321--6640345	13	1.9	13	100	0	50	64	0	36	0	0.94
6640337--6640478	10	14.1	10	73	7	83	67	0	31	0	0.96
6640339--6640467	5	26.4	5	68	13	63	66	0	32	0	0.97
6640380--6640512	62	2.1	62	98	0	257	66	0	33	0	0.98
6640707--6642039	156	8.6	157	91	3	2011	52	7	10	29	1.64
6646313--6646359	23	2.0	22	84	15	60	36	25	0	38	1.56
6646409--6646494	45	1.9	45	92	0	145	33	24	15	26	1.95
6646500--6646686	51	3.7	50	80	8	218	31	26	17	25	1.97
6646498--6646682	101	1.8	102	91	3	311	31	25	17	24	1.97
6650175--6650202	14	2.0	14	100	0	56	50	0	7	42	1.30
6650298--6650504	39	5.3	38	69	13	116	50	11	4	33	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6650371--6650417	23	2.0	23	84	8	60	59	14	2	23	1.46
6650314--6650493	40	4.6	40	67	18	110	49	12	4	33	1.60
6650579--6650624	13	4.0	12	81	13	53	67	10	0	21	1.21
6650733--6650781	25	2.0	25	100	0	98	4	38	4	53	1.39
6651038--6651137	27	3.7	27	69	19	82	49	1	1	49	1.14
6651083--6651126	19	2.1	22	88	12	67	47	0	2	50	1.13
6651145--6651213	20	3.6	19	69	21	54	53	1	1	43	1.18
6655350--6656091	88	8.4	88	90	0	1119	26	24	20	28	1.99
6657706--6657807	41	2.5	40	85	6	132	26	25	19	28	1.99
6663883--6664007	67	1.9	66	94	1	223	28	32	20	19	1.96
6664135--6664282	57	2.5	60	82	9	187	22	27	20	29	1.98
6666919--6667116	41	4.8	41	90	0	288	19	20	27	31	1.97
6667924--6668200	69	4.0	69	89	0	401	25	10	19	44	1.83
6668088--6668143	23	2.4	22	75	18	60	26	5	23	44	1.74
6667940--6668210	24	11.7	23	66	12	88	27	10	19	43	1.83
6674643--6674840	41	4.8	41	89	0	279	19	20	27	32	1.97
6675446--6675646	24	8.6	23	66	10	95	27	9	19	43	1.82
6675430--6675719	69	4.2	69	87	0	391	26	11	19	42	1.85
6675434--6675601	22	7.4	22	64	10	77	25	13	19	42	1.87
6680396--6680454	26	2.4	25	75	10	59	47	1	10	40	1.47
6681802--6681826	8	3.1	8	100	0	50	52	0	0	48	1.00
6682806--6682861	15	3.8	15	83	4	69	50	1	17	30	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6682805--6682861	29	2.0	29	85	0	78	50	1	17	29	1.56
6685939--6685983	24	1.9	23	86	4	63	42	13	4	40	1.64
6685938--6685989	24	2.2	24	79	3	61	44	11	3	40	1.59
6686261--6686313	26	2.0	26	85	7	72	35	0	0	64	0.94
6692364--6692412	20	2.5	20	82	0	53	42	4	6	46	1.47
6692880--6692947	20	3.3	20	74	10	66	54	4	23	17	1.61
6705929--6705988	30	2.0	31	86	3	86	40	0	40	20	1.52
6706281--6706329	9	5.4	9	85	0	71	38	20	12	28	1.89
6706281--6706331	18	2.8	18	93	0	93	37	19	11	31	1.88
6707105--6707292	50	3.7	50	72	9	146	21	20	27	31	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126