genome.fa.s14.2.7.7.80.10.50.1000.47.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr12
Parameters: 2 7 7 80 10 50 1000
Length:  39383930

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  47  of  126  ( 15042 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13665276--13665375	9	10.9	9	77	14	66	65	1	1	33	1.06
13665249--13665375	28	4.6	27	76	14	91	65	1	1	31	1.11
13665242--13665375	9	14.8	8	74	17	63	66	1	1	30	1.10
13665242--13665384	27	5.2	27	69	19	82	65	1	1	32	1.10
13665279--13665376	18	5.3	18	74	16	78	65	1	1	32	1.06
13665998--13666039	21	1.9	23	85	9	61	33	4	0	61	1.17
13665977--13666042	33	2.0	33	82	5	80	34	4	1	59	1.27
13668944--13668991	18	2.7	17	78	9	60	39	16	2	41	1.60
13678242--13678281	19	2.1	19	90	0	62	37	25	5	32	1.77
13679597--13679639	21	2.0	21	81	0	50	34	2	20	41	1.65
13680667--13680783	62	1.9	59	89	5	180	50	3	2	43	1.32
13690510--13690558	26	1.9	26	87	4	73	22	22	18	36	1.95
13690507--13690564	26	2.3	25	78	3	71	20	22	20	36	1.95
13699689--13699739	16	3.4	15	78	21	54	49	1	0	49	1.12
13703338--13703367	14	2.1	15	93	6	53	36	20	23	20	1.95
13707507--13707596	22	4.0	22	71	8	74	23	20	31	25	1.98
13717264--13717326	10	5.9	10	72	20	56	1	15	7	74	1.12
13718565--13718738	44	3.9	44	79	4	163	20	18	14	46	1.84
13718523--13718739	45	4.8	44	75	9	156	20	19	13	46	1.84
13723100--13723177	27	2.9	27	77	11	88	23	28	15	33	1.95
13726732--13726777	21	2.2	21	84	0	56	8	6	10	73	1.23
13726743--13726788	11	4.3	11	80	5	58	6	4	13	76	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13726934--13726972	17	2.4	17	82	4	53	25	0	7	66	1.18
13726972--13727007	12	3.0	12	87	0	54	75	0	0	25	0.81
13732154--13732290	51	2.7	51	79	0	175	40	13	6	39	1.71
13734956--13735092	51	2.7	51	79	0	175	40	13	6	39	1.71
13738967--13739041	30	2.5	29	79	16	73	58	4	1	36	1.25
13739029--13739125	9	10.1	9	68	22	56	60	3	2	34	1.24
13739020--13739072	20	2.6	21	82	8	74	60	1	0	37	1.08
13739027--13739125	29	3.5	28	79	5	92	60	3	2	34	1.23
13739359--13739388	8	3.6	8	91	8	51	43	0	0	56	0.99
13739360--13739390	9	3.6	9	95	4	55	41	0	0	58	0.98
13741762--13741910	43	3.5	43	87	2	203	18	31	31	18	1.95
13743568--13743629	31	2.0	31	100	0	124	32	9	16	41	1.80
13744176--13744221	21	2.2	20	92	7	83	71	13	15	0	1.14
13749772--13749833	31	2.0	31	100	0	124	32	9	16	41	1.80
13752122--13752160	20	2.0	20	89	0	60	30	12	12	43	1.81
13753519--13753556	17	2.2	17	86	13	51	60	0	13	26	1.33
13758092--13758130	20	2.0	20	89	0	60	30	12	12	43	1.81
13762613--13762689	32	2.4	32	97	2	147	28	23	2	45	1.66
13767753--13768091	41	8.3	41	82	1	329	35	14	27	22	1.93
13767738--13768091	82	4.3	82	83	0	395	35	14	27	22	1.93
13767864--13767930	21	3.2	21	71	12	75	31	19	31	17	1.95
13767753--13768087	123	2.7	123	82	2	404	35	14	27	22	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13769861--13769902	21	2.0	21	81	9	50	52	2	11	33	1.51
13770884--13770936	25	2.2	24	89	3	79	16	22	22	37	1.94
13775896--13775947	23	2.2	24	79	6	61	30	32	7	28	1.85
13775907--13775956	23	2.2	23	88	0	73	28	30	6	36	1.81
13780531--13780612	27	3.0	26	80	7	92	36	12	25	25	1.91
13784509--13784540	16	2.0	16	100	0	64	62	0	12	25	1.30
13794609--13794890	121	2.3	121	80	2	307	32	14	25	27	1.94
13794824--13794887	27	2.4	27	86	0	83	34	10	26	28	1.90
13805955--13805988	17	2.0	17	88	11	52	70	0	11	17	1.16
13806487--13806541	2	27.5	2	96	0	101	52	0	47	0	1.00
13811025--13811113	25	3.1	30	81	15	116	25	24	6	42	1.79
13811035--13811081	15	3.1	15	70	11	51	27	23	8	40	1.83
13817330--13817380	13	3.9	14	77	12	63	60	0	1	37	1.08
13817390--13817472	7	11.9	7	91	7	125	43	0	1	55	1.07
13819904--13819945	22	1.9	23	90	9	70	66	2	0	30	1.04
13836357--13836487	52	2.5	53	86	3	185	23	12	6	56	1.61
13836431--13836464	17	1.9	18	88	5	52	14	20	0	64	1.28
13842775--13842814	20	2.0	20	90	0	62	27	10	12	50	1.72
13844961--13844986	7	3.7	7	100	0	52	76	0	0	23	0.78
13850773--13851035	40	6.6	39	86	4	278	25	27	21	25	1.99
13850773--13851035	120	2.2	119	82	4	307	25	27	21	25	1.99
13850967--13851044	40	1.9	41	82	10	97	26	28	20	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13858720--13858891	40	4.3	40	87	2	213	25	28	21	24	1.99
13858720--13858944	80	2.8	79	80	7	231	25	28	21	24	1.99
13858876--13858953	40	1.9	41	82	10	97	26	28	20	24	1.99
13860639--13860684	9	5.0	9	84	5	65	67	0	0	32	0.91
13865932--13866008	31	2.4	31	89	4	109	28	3	15	51	1.61
13869431--13869649	41	5.3	41	93	0	357	29	21	27	21	1.98
13881284--13881323	18	2.2	18	86	4	53	25	27	0	47	1.52
13884041--13884098	26	2.2	26	84	0	71	56	6	3	32	1.42
13884157--13884203	17	2.8	16	81	18	51	46	2	2	48	1.25
13884866--13884925	30	2.0	30	100	0	120	36	6	0	56	1.26
13886485--13886544	13	4.6	13	77	8	68	35	1	8	55	1.40
13886485--13886544	26	2.3	25	88	8	93	35	1	8	55	1.40
13886483--13886551	27	2.5	28	83	6	97	37	1	8	52	1.42
13886842--13886876	18	2.0	18	94	5	63	57	2	0	40	1.14
13887023--13887062	6	6.8	6	82	5	55	50	2	0	47	1.14
13887018--13887052	18	1.9	18	94	0	61	48	2	0	48	1.16
13889724--13889759	6	6.0	6	100	0	72	33	0	16	50	1.46
13892124--13892197	29	2.5	29	86	4	94	51	16	12	20	1.76
13894537--13894561	8	3.1	8	100	0	50	52	0	24	24	1.48
13897852--13897889	20	2.0	20	89	5	60	71	15	0	13	1.16
13898567--13898597	3	10.3	3	100	0	62	32	0	0	67	0.91
13908214--13908288	12	6.3	11	73	13	51	61	2	6	29	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13914157--13914549	114	3.4	114	91	0	615	36	19	20	23	1.95
13915168--13915243	21	3.6	21	76	16	84	18	0	28	52	1.45
13915322--13915377	7	8.0	7	79	0	58	14	0	39	46	1.44
13915322--13915376	28	2.0	28	96	0	101	12	0	40	47	1.42
13915345--13915384	21	1.9	21	84	0	53	20	0	32	47	1.50
13915325--13915389	28	2.3	28	86	0	85	16	1	33	47	1.56
13915324--13915377	14	3.9	14	80	0	72	14	0	37	48	1.45
13915513--13915548	15	2.3	16	90	4	56	61	0	2	36	1.11
13915749--13915786	20	1.9	20	94	0	67	34	0	7	57	1.28
13916410--13916438	15	1.9	15	100	0	58	37	0	13	48	1.43
13916392--13916461	16	3.9	16	69	25	50	41	0	10	48	1.36
13916434--13916484	25	2.1	24	85	3	66	47	0	5	47	1.26
13921724--13921771	21	2.3	21	88	0	69	33	18	45	2	1.61
13922139--13922281	43	3.3	43	83	6	166	29	18	25	26	1.98
13922139--13922447	42	7.3	43	77	5	236	25	19	25	29	1.98
13922155--13922447	85	3.5	83	76	9	232	26	19	24	29	1.99
13924330--13924518	43	4.4	43	83	2	227	27	30	19	22	1.98
13926142--13926182	20	2.0	20	100	0	82	41	19	4	34	1.73
13928900--13929207	41	7.5	41	84	1	377	31	27	20	19	1.97
13928900--13929200	122	2.5	122	84	4	356	32	26	20	20	1.97
13929259--13929375	39	3.0	39	78	10	125	20	22	22	35	1.96
13929951--13929985	18	1.9	18	94	0	61	45	5	14	34	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13948458--13948482	8	3.1	8	100	0	50	28	12	36	24	1.91
13949370--13949531	41	4.0	41	83	4	193	20	18	27	33	1.96
13957943--13958042	49	2.0	49	96	0	182	26	11	21	42	1.85
13959059--13959088	15	2.0	15	93	0	51	56	13	0	30	1.37
13973794--13973833	18	2.3	17	91	4	62	57	0	37	5	1.21
13974877--13974916	20	2.1	18	90	9	62	40	0	5	55	1.22
13980629--13980856	52	4.4	51	81	2	224	39	27	15	17	1.90
13980629--13980864	26	9.1	26	72	7	124	38	27	15	18	1.91
13983750--13983824	38	2.0	38	94	0	132	42	18	8	30	1.79
13987336--13987377	21	2.0	21	86	9	59	42	19	14	23	1.87

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126