genome.fa.s14.2.7.7.80.10.50.1000.26.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr12
Parameters: 2 7 7 80 10 50 1000
Length:  39383930

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  26  of  126  ( 15042 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7422758--7422799	3	14.3	3	85	5	59	66	2	0	30	1.04
7430669--7430711	3	14.3	3	100	0	86	67	0	0	32	0.91
7435492--7435703	104	2.0	105	91	1	345	31	18	11	38	1.87
7436010--7436058	25	2.0	25	87	0	71	2	22	22	53	1.57
7436893--7437021	67	1.9	66	89	6	197	48	11	14	24	1.77
7439256--7439428	72	2.4	72	82	5	233	26	6	12	54	1.62
7441665--7441692	8	3.5	8	100	0	56	50	0	0	50	1.00
7441952--7441984	13	2.5	13	100	0	66	45	15	9	30	1.77
7451599--7451773	54	3.2	54	96	0	314	40	13	2	42	1.59
7452435--7452548	38	3.0	38	81	0	138	37	15	14	32	1.88
7454634--7454685	19	2.6	19	76	11	52	32	17	0	50	1.47
7455674--7455712	18	2.2	18	80	0	51	58	5	0	35	1.20
7457055--7457093	19	2.0	20	90	5	62	41	0	2	56	1.13
7464727--7464779	27	2.0	27	88	0	79	26	1	5	66	1.25
7464764--7464789	11	2.4	11	100	0	52	34	0	0	65	0.93
7464773--7464833	27	2.3	26	86	5	79	37	0	1	60	1.07
7475426--7475534	27	4.0	27	90	0	155	18	29	33	18	1.95
7475655--7475712	13	4.5	12	73	14	53	68	0	31	0	0.89
7475684--7475717	8	4.1	8	85	7	50	82	0	17	0	0.67
7475682--7475716	17	2.1	17	94	0	61	80	0	20	0	0.72
7475871--7475992	60	2.0	60	95	0	217	32	0	12	54	1.37
7476187--7476475	103	2.8	101	88	5	422	29	0	16	53	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7476220--7476475	102	2.5	104	91	3	423	29	0	16	53	1.44
7476481--7476516	18	2.1	18	89	5	56	30	0	5	63	1.17
7477565--7477693	33	3.9	34	76	9	92	20	44	11	23	1.83
7477603--7477726	66	1.9	66	83	9	164	17	41	12	28	1.85
7477603--7477730	33	3.9	34	76	7	120	17	41	12	28	1.86
7479722--7479746	13	1.9	13	100	0	50	32	20	16	32	1.94
7480296--7480473	27	6.6	26	82	6	178	26	15	28	29	1.96
7480297--7480452	82	1.9	81	86	3	224	26	16	28	28	1.97
7480293--7480473	82	2.2	81	82	2	220	27	16	27	29	1.97
7480378--7480484	27	3.9	27	85	1	70	26	14	28	30	1.95
7488486--7488663	27	6.6	27	83	3	205	26	15	28	29	1.96
7488487--7488642	82	1.9	81	88	3	233	26	15	28	29	1.96
7488483--7488663	82	2.2	81	83	2	229	27	15	27	29	1.96
7492459--7492543	27	3.1	27	86	0	116	23	35	21	20	1.96
7495277--7495310	11	3.1	11	86	0	50	32	26	0	41	1.56
7497138--7497180	18	2.4	18	84	0	50	18	25	9	46	1.79
7497580--7497846	49	5.5	49	95	0	473	42	2	9	45	1.50
7501039--7501450	125	3.3	124	87	0	572	30	20	16	31	1.95
7502730--7502762	5	6.4	5	96	3	57	78	0	0	21	0.75
7504886--7505007	41	3.0	41	79	4	129	22	26	34	17	1.95
7504900--7505259	146	2.5	143	81	4	398	23	23	31	21	1.98
7505095--7505357	104	2.5	104	83	1	303	24	22	30	21	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7505552--7505591	20	2.0	20	90	0	62	0	25	20	55	1.44
7507939--7507981	20	2.2	20	83	4	52	51	6	6	34	1.56
7508533--7508570	16	2.3	17	86	4	51	50	0	2	47	1.15
7509181--7509205	5	5.0	5	100	0	50	20	0	0	80	0.72
7509203--7509227	6	4.2	6	100	0	50	48	0	0	52	1.00
7509203--7509262	20	3.2	20	79	9	54	48	0	0	51	1.00
7509245--7509278	13	2.6	14	86	13	54	38	0	0	61	0.96
7513755--7513793	21	1.9	20	85	15	53	66	2	5	25	1.25
7514506--7514541	15	2.5	14	86	8	54	44	8	0	47	1.33
7515100--7515146	16	2.9	17	84	6	62	23	2	4	70	1.16
7515091--7515140	17	2.7	19	80	20	61	24	0	2	74	0.93
7516337--7516412	4	19.0	4	72	22	54	71	0	5	23	1.07
7517769--7518166	199	2.0	199	100	0	796	35	14	22	28	1.93
7517808--7518219	199	2.1	197	86	3	567	41	12	18	27	1.87
7518243--7518278	15	2.5	14	86	8	54	44	8	0	47	1.33
7523973--7524005	17	1.9	17	100	0	66	42	9	0	48	1.35
7528773--7528812	20	2.0	21	90	5	64	40	30	2	27	1.70
7533868--7533938	35	2.0	35	100	0	142	39	11	11	38	1.77
7533962--7533998	16	2.3	16	90	0	56	45	5	0	48	1.25
7537249--7537297	24	2.0	24	88	7	73	14	26	4	55	1.57
7545076--7545215	25	5.6	25	64	17	60	20	22	20	37	1.95
7549491--7549618	43	3.0	43	78	15	147	23	16	28	31	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7554734--7554868	40	3.4	39	77	7	139	33	27	16	22	1.95
7554734--7554869	41	3.5	39	75	12	127	33	27	16	22	1.95
7555805--7555847	22	2.0	22	86	9	61	32	4	0	62	1.15
7556952--7557002	20	2.5	20	74	0	57	72	1	0	25	0.95
7556997--7557026	11	2.6	11	94	5	51	46	0	3	50	1.18
7557041--7557066	11	2.4	11	100	0	52	53	0	7	38	1.30
7556973--7557085	41	2.8	40	84	13	144	61	0	2	35	1.16
7558088--7558119	2	16.0	2	100	0	64	50	0	50	0	1.00
7563561--7563623	31	2.0	31	100	0	126	39	12	6	41	1.69
7564468--7564540	24	3.0	24	70	21	71	31	16	21	30	1.95
7575229--7575340	42	2.6	42	79	9	120	14	22	16	46	1.83
7575230--7575301	21	3.4	21	70	14	67	12	20	16	50	1.78
7577228--7577481	49	5.1	49	76	14	277	42	3	10	43	1.55
7577252--7577515	49	5.3	48	72	19	220	43	3	9	44	1.51
7577231--7577499	100	2.7	100	98	0	520	42	3	9	43	1.55
7578377--7578576	43	4.7	43	87	3	269	22	20	28	29	1.98
7579545--7579579	13	2.6	13	95	4	61	31	20	14	34	1.92
7580650--7583238	862	3.0	862	98	0	4962	31	14	24	30	1.94
7586350--7586478	42	3.1	40	82	6	132	16	19	19	44	1.86
7586411--7586478	21	3.2	21	74	0	64	14	20	19	45	1.85
7587427--7587527	51	2.0	51	96	0	184	55	8	7	27	1.59
7589117--7589226	58	1.9	58	83	7	143	19	25	10	45	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7589183--7589230	13	3.5	13	72	10	51	18	31	12	37	1.88
7589113--7589265	57	2.7	57	79	9	152	18	28	9	43	1.81
7589137--7589264	28	4.5	28	75	12	109	19	28	10	41	1.84
7589480--7589514	18	1.9	18	88	0	52	8	17	14	60	1.58
7592729--7592810	34	2.4	34	97	2	155	39	8	13	39	1.75
7592898--7592922	11	2.3	11	100	0	50	40	16	0	44	1.47
7593457--7593484	6	4.7	6	100	0	56	67	0	0	32	0.91
7594758--7594788	13	2.4	13	94	0	53	32	19	22	25	1.97
7602189--7602250	31	2.0	31	93	3	108	40	6	12	40	1.69
7602191--7602295	31	3.5	31	79	8	92	43	5	10	40	1.63
7604478--7604521	17	2.5	17	85	3	61	43	4	9	43	1.56
7605471--7605508	20	2.0	20	89	5	60	63	0	7	28	1.23
7605705--7605907	101	2.0	101	95	0	361	25	4	20	49	1.68
7607896--7608031	45	3.0	45	85	0	182	26	25	14	33	1.95
7614309--7614354	23	2.1	23	84	8	60	43	15	4	36	1.66
7614309--7614367	22	2.7	22	82	7	66	40	16	3	38	1.66
7614338--7614373	19	2.0	17	89	10	54	33	16	5	44	1.71
7614827--7615210	131	2.9	131	85	3	511	26	24	20	28	1.99
7615008--7615188	44	4.1	44	64	18	106	26	23	20	29	1.99
7614805--7615218	132	3.1	132	84	2	537	26	25	19	28	1.99
7615277--7615413	44	3.1	44	70	13	111	26	20	19	33	1.97
7615449--7615881	89	4.9	89	78	7	428	26	23	19	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7615449--7615881	45	9.7	45	78	2	390	26	23	19	30	1.98
7622998--7623055	22	2.6	22	81	7	64	41	17	3	37	1.66
7622823--7623295	238	2.0	238	98	0	919	38	17	15	27	1.91
7623236--7623293	22	2.6	22	81	7	64	41	17	3	37	1.66
7623264--7623299	19	2.0	17	89	10	54	33	16	5	44	1.71
7626663--7626701	19	2.1	18	85	9	51	20	0	28	51	1.48
7627230--7627386	43	3.7	42	79	4	163	24	17	26	31	1.97
7642877--7642949	35	2.1	35	89	0	110	30	4	8	57	1.47
7643923--7644009	43	2.0	43	90	0	138	40	4	22	32	1.75
7648101--7648329	43	5.3	43	88	2	271	30	30	13	25	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126