genome.fa.s14.2.7.7.80.10.50.1000.11.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr12
Parameters: 2 7 7 80 10 50 1000
Length:  39383930

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  11  of  126  ( 15042 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2989850--2989881	13	2.3	15	89	10	50	53	6	0	40	1.26
2991238--2991273	16	2.3	16	90	4	56	25	25	25	25	2.00
2994802--2994851	18	2.9	18	83	13	61	46	14	4	36	1.63
2997105--2997317	110	1.9	110	84	0	282	27	10	22	39	1.87
3020048--3020092	21	2.1	22	84	12	58	33	11	11	44	1.75
3021645--3021699	21	2.6	22	73	21	55	27	5	61	5	1.40
3023852--3023892	15	2.7	15	80	0	55	60	2	9	26	1.40
3027603--3027656	15	3.3	15	74	18	54	42	0	1	55	1.10
3027722--3027763	20	2.0	22	86	9	61	54	0	0	45	0.99
3030601--3030633	16	2.1	16	88	11	50	48	9	0	42	1.35
3032139--3032170	6	5.3	6	100	0	64	34	0	15	50	1.45
3034907--3034958	16	3.2	16	75	17	54	71	3	1	23	1.13
3042312--3042346	12	2.9	12	95	0	61	5	25	2	65	1.28
3049540--3049884	147	2.3	147	90	2	541	28	23	20	28	1.99
3059745--3059813	26	2.7	26	76	10	70	44	0	0	55	0.99
3062038--3062081	21	2.1	21	83	4	54	59	6	2	31	1.36
3062819--3062852	4	8.2	4	87	6	50	50	0	2	47	1.16
3070923--3071105	96	1.9	95	84	7	246	31	6	16	45	1.73
3075138--3075185	7	6.9	7	80	17	55	77	2	0	20	0.88
3075139--3075188	8	6.9	8	80	15	56	76	2	0	22	0.89
3076184--3076211	2	14.0	2	100	0	56	50	50	0	0	1.00
3086222--3086267	22	2.1	22	100	0	92	43	17	8	30	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3089473--3090099	263	2.4	262	88	1	918	29	14	19	35	1.92
3093697--3093840	58	2.4	59	79	8	168	34	13	24	28	1.93
3094980--3095005	11	2.4	11	100	0	52	76	15	7	0	0.99
3097918--3097979	30	2.0	31	87	3	90	29	14	8	48	1.72
3103142--3103186	9	4.7	9	81	10	54	24	2	2	71	1.09
3103169--3103224	24	2.7	20	70	21	51	32	0	3	64	1.11
3111000--3111042	18	2.3	19	84	15	54	65	2	2	30	1.18
3116300--3116328	10	2.9	10	100	0	58	48	20	20	10	1.79
3116365--3116750	136	2.7	142	84	10	449	37	19	14	27	1.92
3116807--3117069	132	2.0	131	85	4	359	35	19	15	28	1.93
3116983--3117234	130	1.9	128	86	4	353	38	17	14	29	1.89
3125368--3125410	11	3.9	11	82	11	61	55	0	2	41	1.12
3125396--3125464	30	2.3	31	92	5	115	63	0	2	33	1.09
3125375--3125472	30	3.2	30	83	9	110	62	0	4	33	1.14
3126986--3127029	24	1.9	24	90	9	74	36	0	2	61	1.09
3127096--3127265	59	2.9	59	92	0	295	45	9	5	40	1.59
3127276--3127317	16	2.6	16	92	0	66	42	7	2	47	1.43
3127293--3127352	23	2.7	23	79	5	61	48	1	1	48	1.21
3128995--3129028	3	11.3	3	100	0	68	64	0	0	35	0.94
3130707--3130765	30	1.9	31	89	3	93	28	6	16	47	1.72
3136169--3136207	18	2.2	18	90	0	60	48	10	7	33	1.66
3136708--3136845	69	2.0	69	91	2	224	45	10	12	31	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3137045--3137069	9	2.8	9	100	0	50	48	0	0	52	1.00
3145315--3145347	15	2.2	15	89	10	50	51	18	30	0	1.46
3151865--3151944	31	2.6	31	80	4	90	32	20	22	25	1.98
3154600--3154639	14	2.8	14	84	3	53	57	2	0	40	1.12
3156394--3156650	87	3.0	88	82	5	317	23	12	18	45	1.83
3157769--3157806	13	2.9	13	100	0	76	23	7	28	39	1.83
3181854--3181897	22	2.0	22	83	12	56	61	4	13	20	1.50
3182272--3182388	19	5.5	19	65	21	63	22	1	34	41	1.64
3182291--3182371	25	3.5	24	71	21	84	20	2	32	44	1.65
3182269--3182386	44	2.7	44	95	0	218	22	1	32	44	1.63
3182375--3182399	13	1.9	13	100	0	50	16	0	44	40	1.47
3191399--3191449	15	3.5	15	69	15	52	21	9	15	52	1.71
3193258--3193321	31	2.1	31	100	0	128	34	9	15	40	1.80
3209755--3209791	10	3.6	10	85	7	56	75	2	10	10	1.14
3213463--3213539	31	2.5	31	87	4	93	24	6	15	53	1.66
3216525--3216582	25	2.4	25	85	2	73	25	1	25	46	1.62
3216844--3217556	175	4.1	175	87	2	993	43	22	12	21	1.86
3216844--3217553	348	2.0	351	88	1	1061	43	22	12	21	1.85
3218281--3218331	22	2.3	22	86	0	75	25	29	1	43	1.66
3218354--3218404	22	2.3	22	93	0	93	27	31	0	41	1.56
3218276--3218440	73	2.3	73	94	0	285	26	27	1	45	1.61
3219579--3219604	7	3.7	7	100	0	52	26	0	15	57	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3220535--3220583	21	2.3	21	82	6	55	36	36	24	2	1.67
3220784--3221501	29	24.6	29	90	2	1008	45	30	0	23	1.53
3221497--3221698	37	5.5	37	98	0	386	39	7	2	50	1.46
3224674--3225017	124	2.8	123	93	0	562	35	22	14	27	1.93
3238495--3238922	232	1.9	230	81	5	533	42	15	10	32	1.80
3239362--3240018	205	3.2	204	87	3	874	52	12	15	19	1.74
3240513--3240545	16	2.1	16	100	0	66	24	0	27	48	1.51
3242003--3242042	20	2.0	20	90	0	62	27	10	12	50	1.72
3241988--3242054	34	1.9	35	90	3	109	31	8	13	46	1.74
3241982--3242058	14	5.0	15	71	20	52	33	9	14	42	1.77
3242141--3242179	20	2.0	20	94	0	69	48	2	0	48	1.15
3242210--3242262	17	3.2	15	80	17	52	41	1	1	54	1.22
3244919--3244979	25	2.4	26	74	20	65	60	1	32	4	1.28
3245041--3245074	18	1.9	17	94	5	59	41	0	58	0	0.98
3245428--3245480	25	2.2	24	83	10	63	37	1	5	54	1.35
3245446--3245485	17	2.3	18	86	4	55	40	0	5	55	1.22
3246830--3246862	17	1.9	17	88	11	50	30	9	21	39	1.84
3247955--3247979	5	5.0	5	100	0	50	60	0	0	40	0.97
3250864--3251001	69	2.0	69	98	0	267	40	5	22	31	1.76
3251020--3251051	12	2.6	13	85	14	50	37	0	6	56	1.25
3252027--3252141	39	2.9	39	64	19	94	39	4	19	37	1.71
3259533--3259621	38	2.2	40	86	5	119	51	7	1	39	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3266879--3266914	15	2.3	16	90	4	56	61	0	2	36	1.11
3272162--3272197	7	5.3	7	90	3	56	27	2	13	55	1.52
3284076--3284564	257	1.9	257	91	1	809	38	19	15	27	1.91
3293769--3293856	41	2.1	42	93	4	151	56	6	9	27	1.55
3294518--3294587	33	2.1	33	86	5	97	34	5	32	27	1.80
3296898--3296931	11	3.0	11	86	4	50	20	0	2	76	0.92
3298872--3299111	101	2.4	101	90	0	372	30	14	25	29	1.94
3303162--3303199	15	2.5	15	79	12	51	15	5	31	47	1.68
3308694--3308773	39	2.1	39	85	0	106	22	3	41	32	1.72
3308840--3308870	3	10.3	3	92	0	53	35	0	64	0	0.94
3308869--3308914	12	3.8	12	79	0	56	17	0	52	30	1.45
3321412--3321801	201	2.0	198	96	1	726	33	10	14	41	1.80
3341793--3342231	223	2.0	223	86	1	612	35	13	18	33	1.89
3341400--3343186	891	2.0	891	99	0	3556	35	12	16	34	1.87
3342684--3343122	223	2.0	223	86	1	621	35	13	17	33	1.89
3347022--3347093	31	2.3	31	83	4	83	25	6	11	56	1.58
3348706--3348765	31	1.9	31	96	0	111	45	13	11	30	1.79
3351093--3351121	6	4.8	6	100	0	58	17	0	0	82	0.66
3351114--3351154	17	2.4	17	84	11	57	39	2	0	58	1.11
3351116--3351156	18	2.4	17	87	4	55	39	2	0	58	1.11
3353128--3353289	3	54.0	3	98	0	315	66	0	33	0	0.97
3353495--3354135	334	1.9	326	87	6	923	38	11	12	37	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3354617--3354656	2	20.0	2	100	0	80	50	0	50	0	1.00
3359562--3359605	17	2.5	17	88	3	61	36	6	9	47	1.62
3359983--3360044	28	2.2	28	91	0	97	53	24	0	22	1.46
3360847--3360896	24	2.1	24	96	0	91	14	14	26	46	1.81
3373057--3373124	27	2.5	27	87	0	100	23	29	35	11	1.90
3378124--3378164	21	2.0	21	90	0	64	19	29	21	29	1.98
3388757--3388782	13	2.0	13	100	0	52	53	0	15	30	1.42
3394206--3394255	24	2.1	24	100	0	100	46	4	32	18	1.67
3400538--3400595	29	2.0	28	86	3	80	43	3	13	39	1.61
3401627--3401676	8	6.4	8	82	13	59	42	2	0	56	1.11

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126