genome.fa.s14.2.7.7.80.10.50.1000.109.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr12
Parameters: 2 7 7 80 10 50 1000
Length:  39383930

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  109  of  126  ( 15042 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33319306--33319461	82	1.9	81	88	3	233	26	15	28	29	1.96
33319302--33319482	82	2.2	81	83	2	229	27	15	27	29	1.96
33327368--33327545	27	6.6	27	83	3	205	26	15	28	29	1.96
33327369--33327524	82	1.9	81	88	3	233	26	15	28	29	1.96
33327365--33327545	82	2.2	81	83	2	229	27	15	27	29	1.96
33338778--33338961	100	1.8	100	86	0	269	25	22	32	20	1.98
33338778--33338939	50	3.2	50	94	0	270	24	22	32	20	1.98
33345152--33345186	17	2.1	17	100	0	70	34	5	14	45	1.68
33345504--33345701	50	3.8	50	79	6	155	27	20	26	24	1.99
33347199--33347252	27	2.0	27	100	0	108	48	14	14	22	1.81
33350404--33350433	13	2.3	13	100	0	60	50	23	0	26	1.50
33351970--33352489	27	19.3	27	81	4	480	19	18	19	42	1.89
33351970--33352489	81	6.4	81	82	5	559	19	18	19	42	1.89
33365823--33366062	50	4.7	50	75	7	171	27	19	27	25	1.99
33366267--33366305	20	2.0	20	90	10	62	56	5	23	15	1.59
33373965--33374013	20	2.5	20	78	15	57	55	6	24	14	1.62
33382042--33382120	30	2.6	30	91	0	131	30	24	25	20	1.98
33382225--33382327	26	4.0	25	76	7	89	38	21	21	18	1.93
33382520--33383319	27	29.3	27	76	12	192	24	18	17	39	1.92
33382523--33383319	54	14.6	53	80	6	747	24	17	17	39	1.92
33382520--33383319	81	9.8	81	81	7	791	24	18	17	39	1.92
33386430--33386752	27	11.8	27	80	8	278	41	20	17	20	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33386431--33386766	81	4.1	82	81	7	339	41	20	17	20	1.90
33386431--33386766	54	6.1	54	83	5	318	41	20	17	20	1.90
33387119--33387173	28	2.0	28	92	0	92	23	20	23	32	1.98
33395643--33395723	41	2.0	41	87	4	119	38	12	18	30	1.88
33402300--33402337	11	3.5	11	92	0	58	26	39	0	34	1.57
33402286--33402354	11	6.1	11	74	17	52	23	36	0	40	1.55
33404327--33404504	27	6.6	27	83	3	205	26	15	28	29	1.96
33404328--33404483	82	1.9	81	88	3	233	26	15	28	29	1.96
33404324--33404504	82	2.2	81	83	2	229	27	15	27	29	1.96
33406906--33406963	30	1.9	30	89	0	89	37	22	12	27	1.89
33407348--33407981	319	2.0	319	98	0	1214	27	22	16	33	1.95
33408984--33409246	40	6.6	39	86	4	278	25	27	21	25	1.99
33408984--33409246	120	2.2	119	82	4	307	25	27	21	25	1.99
33409178--33409255	40	1.9	41	82	10	97	26	28	20	24	1.99
33416933--33417104	40	4.3	40	88	2	222	25	27	21	25	1.99
33416935--33417157	40	5.6	39	83	5	216	25	27	21	25	1.99
33416933--33417157	80	2.8	79	80	7	240	25	27	21	25	1.99
33417089--33417166	40	1.9	41	82	10	97	26	28	20	24	1.99
33421701--33421735	17	2.1	17	100	0	70	28	5	34	31	1.81
33421640--33421957	158	2.0	158	100	0	636	34	12	20	32	1.90
33421859--33421893	17	2.1	17	100	0	70	28	5	34	31	1.81
33435459--33435703	120	2.1	118	87	4	350	25	20	27	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33435406--33435670	40	6.7	40	90	4	367	24	21	27	26	1.99
33456171--33456222	28	1.9	26	88	7	77	48	0	5	46	1.26
33472026--33472203	27	6.6	27	84	3	205	29	28	15	26	1.96
33472047--33472202	82	1.9	81	88	3	233	29	28	15	26	1.96
33481048--33481106	25	2.5	23	76	10	64	23	23	16	35	1.95
33483181--33484104	40	22.8	40	91	4	1469	22	22	26	28	1.99
33483436--33484192	40	18.7	44	98	0	207	22	23	26	27	1.99
33484199--33484550	175	2.0	173	85	5	456	30	19	18	31	1.96
33484292--33485123	44	18.8	44	67	12	292	28	21	19	30	1.98
33484337--33485006	310	2.2	310	98	0	1286	27	21	20	30	1.98
33484816--33485212	134	3.0	134	98	0	749	27	23	19	28	1.98
33484874--33485294	44	9.5	44	67	16	196	28	23	19	28	1.98
33486615--33486661	7	7.0	7	78	9	53	14	17	0	68	1.22
33486615--33486661	20	2.3	20	85	0	67	14	17	0	68	1.22
33488352--33488407	25	2.1	28	77	12	64	55	7	16	21	1.64
33496661--33496728	29	2.3	29	85	5	93	27	30	13	27	1.94
33496550--33496877	174	1.9	174	96	0	602	30	24	14	29	1.95
33496830--33496908	29	2.7	30	82	13	110	30	30	13	25	1.94
33501206--33501253	7	7.4	7	82	15	59	87	10	0	2	0.62
33501205--33501253	12	3.9	12	86	7	71	85	12	0	2	0.68
33503804--33504160	44	8.3	43	75	10	248	29	20	22	27	1.99
33502516--33503813	132	9.7	132	96	2	2353	28	21	26	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33503809--33504218	217	1.9	217	93	0	703	30	20	22	27	1.98
33504384--33505225	40	21.1	40	99	0	1627	37	12	15	35	1.85
33510814--33510998	51	3.7	50	77	7	160	23	19	26	30	1.98
33511220--33511244	8	3.1	8	100	0	50	64	0	24	12	1.27
33511232--33511263	16	2.0	16	93	0	55	59	0	15	25	1.36
33524605--33524666	30	2.1	30	84	6	81	50	11	6	32	1.64
33528107--33528238	66	2.0	67	95	1	239	23	13	19	43	1.87
33538305--33538348	13	3.4	13	87	0	61	40	18	0	40	1.50
33559904--33559948	22	2.0	22	91	0	72	31	17	20	31	1.96
33565153--33565196	13	3.4	13	87	0	61	40	18	0	40	1.50
33581946--33582013	22	3.3	21	64	27	56	48	23	2	25	1.65
33581924--33582017	39	2.4	39	89	0	134	44	24	2	28	1.65
33595223--33595261	19	2.1	19	85	9	53	33	5	2	58	1.33
33598630--33598670	3	13.7	3	94	0	73	36	0	29	34	1.58
33608243--33609380	126	9.1	125	91	2	1606	27	17	17	37	1.92
33608243--33609380	123	9.1	125	91	2	1620	27	17	17	37	1.92
33609442--33609563	33	3.7	31	80	13	129	46	19	0	33	1.50
33609464--33609553	34	2.8	31	88	8	135	42	17	0	40	1.50
33609586--33609633	6	6.7	7	84	15	55	45	41	0	12	1.42
33612863--33612896	16	2.2	16	89	5	52	55	14	2	26	1.53
33616006--33616039	14	2.4	15	90	9	54	52	32	11	2	1.53
33616074--33616284	41	5.1	41	79	2	199	25	18	23	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33616287--33616328	20	2.2	19	86	4	57	23	4	4	66	1.30
33616377--33616427	26	2.0	26	84	0	66	58	5	11	23	1.55
33616724--33616763	14	2.9	14	88	3	64	20	0	50	30	1.49
33618448--33618477	2	15.0	2	100	0	60	50	0	50	0	1.00
33622181--33622345	43	3.9	43	83	2	190	23	19	30	26	1.98
33625545--33625578	16	2.2	16	94	5	61	52	14	5	26	1.64
33630487--33630535	25	2.0	25	84	8	64	44	12	12	30	1.78
33631116--33631203	28	3.1	28	83	0	104	20	21	15	42	1.89
33633983--33634043	30	2.0	30	100	0	122	40	16	13	29	1.86
33642234--33642332	42	2.3	43	81	8	114	23	33	23	20	1.97
33644326--33644355	11	2.7	11	89	0	51	26	0	6	66	1.16
33650494--33650546	26	2.1	26	92	3	90	54	1	7	35	1.40
33651210--33651251	16	2.4	18	88	11	70	59	0	0	40	0.97
33651519--33651656	69	2.0	69	98	0	267	51	3	13	31	1.58
33651634--33651662	14	2.0	15	93	6	51	55	0	13	31	1.39
33652134--33652304	86	2.0	86	100	0	342	33	5	16	44	1.72
33653880--33653904	12	2.1	12	100	0	50	28	16	40	16	1.89
33663877--33663935	30	2.0	30	86	0	82	40	5	25	28	1.77
33664260--33664309	26	1.9	26	91	0	82	18	22	34	26	1.96
33664289--33664515	43	5.4	42	76	11	223	23	16	25	35	1.95
33664288--33664523	85	2.8	84	88	0	337	23	17	25	34	1.96
33667622--33667811	68	2.8	68	85	0	272	36	17	21	24	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33671260--33671450	50	3.7	50	76	4	184	27	20	29	23	1.99
33678614--33678669	28	2.0	28	85	0	76	26	23	19	30	1.98
33692373--33692693	49	6.6	49	93	3	522	33	7	28	29	1.85
33694921--33695146	40	5.7	40	88	4	271	26	27	21	24	1.99
33698249--33698529	40	7.1	40	88	2	395	24	22	27	24	2.00
33699534--33699575	20	2.1	20	100	0	84	23	30	26	19	1.98
33708340--33708471	64	2.1	64	98	0	255	27	25	17	30	1.97
33709512--33709751	28	8.6	28	77	3	178	28	28	17	25	1.97
33709552--33709751	56	3.6	56	80	3	215	28	29	17	25	1.97
33709552--33709751	84	2.4	84	77	3	197	28	29	17	25	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126