genome.fa.s14.2.7.7.80.10.50.1000.24.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr12
Parameters: 2 7 7 80 10 50 1000
Length:  39383930

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  24  of  126  ( 15042 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6920087--6920137	9	5.9	8	95	2	57	33	0	0	66	0.92
6930813--6930853	21	1.9	22	90	5	66	51	41	4	2	1.36
6931945--6931980	3	12.0	3	87	0	54	30	2	2	63	1.22
6931990--6932033	20	2.2	20	87	0	61	34	4	2	59	1.30
6931989--6932033	18	2.3	20	88	7	67	33	4	2	60	1.29
6932242--6932436	97	2.0	97	97	0	372	24	8	9	56	1.59
6932442--6932477	18	2.1	17	89	5	54	13	5	8	72	1.27
6932585--6932912	110	3.0	111	95	0	577	30	15	20	33	1.94
6936332--6936596	46	5.8	46	92	1	419	33	14	21	30	1.93
6939914--6940001	43	2.0	43	97	0	167	35	18	17	29	1.93
6944731--6944824	48	2.0	48	87	8	138	19	12	27	40	1.88
6949471--6949500	15	2.0	15	93	0	51	36	6	0	56	1.26
6961034--6961703	335	2.0	336	95	0	1216	37	18	11	32	1.86
6961818--6962144	156	2.1	156	87	2	478	28	20	13	37	1.91
6962184--6962252	28	2.4	30	76	11	72	36	23	4	36	1.75
6962275--6962347	28	2.6	28	86	0	101	45	21	0	32	1.53
6962547--6962603	29	2.0	29	82	6	71	36	15	14	33	1.88
6963642--6963709	32	2.1	32	91	0	109	29	17	14	38	1.90
6969494--6969543	3	17.3	3	79	8	59	66	4	0	30	1.10
6969494--6969540	18	2.7	18	87	6	71	65	4	0	29	1.11
6973322--6973362	20	2.0	20	95	0	73	53	14	7	24	1.66
6975339--6975384	17	2.8	18	84	15	64	28	41	30	0	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6977851--6977888	19	2.1	19	85	14	53	42	10	5	42	1.62
6978160--6978200	20	2.0	21	85	4	57	14	14	0	70	1.16
6980871--6981155	124	2.3	126	76	9	300	34	20	8	36	1.84
6982018--6982058	21	2.0	21	90	4	66	26	9	12	51	1.70
6986305--6986358	9	5.4	11	86	13	57	33	0	0	66	0.92
6986304--6986360	18	3.0	18	89	7	78	36	0	0	63	0.95
6986316--6986360	9	4.9	9	91	2	72	35	0	0	64	0.94
6988851--6988880	2	15.0	2	100	0	60	50	0	0	50	1.00
6989035--6989095	31	2.0	31	83	6	79	37	4	13	44	1.65
6989912--6989979	35	1.9	35	93	0	118	27	10	17	44	1.81
6990301--6990336	15	2.4	14	86	13	54	63	0	0	36	0.94
6993697--6993790	9	10.0	9	73	12	73	62	1	4	31	1.21
6993710--6993804	19	5.1	18	77	12	93	66	1	4	28	1.17
6993702--6993806	28	3.7	27	72	13	77	65	0	4	28	1.19
6993758--6993804	10	5.0	9	80	15	51	72	0	4	23	1.02
6994060--6994216	9	17.4	9	69	16	94	29	1	2	65	1.16
6994049--6994140	19	4.8	20	82	6	68	27	3	3	66	1.23
6994135--6994181	22	2.2	21	84	3	58	34	0	4	61	1.15
6994114--6994190	32	2.5	30	75	8	75	32	1	2	63	1.16
6994060--6994216	19	8.2	19	73	10	90	29	1	2	65	1.16
7000224--7000374	42	3.5	43	76	8	137	32	25	16	25	1.96
7003937--7004011	17	4.0	18	77	16	80	38	1	1	58	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7003992--7004048	23	2.5	23	85	0	78	43	0	7	49	1.29
7005625--7005754	21	6.3	21	89	1	165	46	17	20	14	1.83
7006536--7006569	16	2.1	16	88	0	50	76	0	2	20	0.92
7009094--7009413	162	2.0	162	91	1	525	29	14	26	29	1.95
7012365--7012398	17	2.0	17	100	0	68	52	11	5	29	1.61
7024266--7024323	28	2.1	28	100	0	116	32	10	17	39	1.83
7026812--7026951	72	1.9	72	97	0	262	42	7	9	40	1.66
7031168--7031215	23	2.0	24	84	4	62	35	0	0	64	0.94
7042549--7042827	139	2.0	139	99	0	549	31	18	17	31	1.95
7048994--7049079	25	3.5	24	70	10	57	33	16	23	26	1.95
7049066--7049181	25	4.7	24	69	14	74	36	19	25	18	1.95
7049064--7049181	50	2.4	50	78	8	141	36	19	24	19	1.95
7051797--7051861	31	2.1	31	86	8	89	30	9	13	46	1.75
7058031--7058093	33	1.9	33	96	0	117	23	0	25	50	1.49
7058031--7058105	33	2.4	30	85	12	91	20	0	26	53	1.46
7061508--7061563	27	2.1	26	83	12	69	39	21	10	28	1.87
7065131--7065186	21	2.6	21	81	10	69	83	7	7	1	0.86
7068084--7068138	28	1.9	29	85	10	78	58	1	0	40	1.09
7068083--7068145	28	2.2	27	81	15	74	57	1	0	41	1.08
7069251--7069288	16	2.4	16	86	4	51	63	2	10	23	1.39
7080170--7080202	15	2.1	16	94	5	59	15	24	18	42	1.88
7080245--7080323	39	2.1	38	87	2	113	32	8	10	48	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7081527--7081578	15	3.2	15	73	19	50	44	0	1	53	1.11
7081599--7081635	16	2.3	17	86	13	60	40	0	0	59	0.97
7082016--7082047	14	2.3	14	100	0	64	43	6	6	43	1.54
7082110--7082156	16	2.8	17	84	12	62	72	2	0	25	0.96
7082110--7082136	8	3.4	8	100	0	54	74	0	0	25	0.83
7082597--7082621	13	1.9	13	100	0	50	48	16	0	36	1.46
7083003--7083047	16	2.8	17	77	19	51	53	2	2	42	1.25
7083645--7083915	126	2.2	126	95	0	497	33	16	20	29	1.94
7086904--7087047	52	2.7	51	75	17	139	48	6	2	43	1.40
7087036--7087076	21	1.9	22	85	5	57	58	4	0	36	1.20
7087036--7087076	22	1.9	20	85	14	55	58	4	0	36	1.20
7087160--7087220	21	2.9	21	75	4	52	8	19	39	32	1.81
7089269--7089313	22	2.0	22	82	0	54	46	2	26	24	1.64
7089283--7089313	11	2.8	11	100	0	62	41	0	29	29	1.56
7089727--7089825	31	3.3	32	72	20	97	22	11	11	55	1.66
7094726--7094771	14	3.4	14	76	11	60	34	0	4	60	1.16
7094723--7094784	26	2.4	26	86	5	90	38	0	3	58	1.15
7100338--7100381	18	2.4	18	76	0	52	22	9	2	65	1.32
7100792--7100831	20	2.1	18	86	13	53	25	15	2	57	1.50
7100875--7101233	110	3.3	110	97	0	657	31	16	20	31	1.95
7101960--7101999	19	2.1	19	100	0	80	15	22	15	47	1.82
7106812--7107213	88	4.6	88	94	0	660	26	24	23	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7107210--7109443	95	23.5	95	94	0	3426	29	16	23	30	1.96
7111011--7111054	18	2.4	18	76	0	52	22	9	2	65	1.32
7111534--7111813	110	2.6	110	93	1	474	29	16	21	32	1.95
7113004--7113077	30	2.5	30	84	0	85	33	45	12	8	1.71
7113136--7113174	18	2.2	18	90	0	60	20	25	10	43	1.83
7113598--7113665	34	2.0	35	94	2	120	41	2	8	47	1.50
7116087--7116377	126	2.3	126	92	0	474	26	20	19	32	1.97
7116416--7116711	94	3.1	92	76	8	263	42	16	2	38	1.63
7116411--7116711	95	3.2	96	77	6	265	41	17	2	37	1.64
7119494--7119529	15	2.5	14	86	8	54	44	8	0	47	1.33
7120086--7120124	20	2.0	20	89	0	60	15	7	2	74	1.15
7121108--7121185	5	15.4	5	70	17	54	73	0	3	23	1.00
7121093--7121184	11	9.3	10	72	26	56	71	0	4	23	1.03
7125201--7125319	58	2.1	58	90	0	184	20	21	15	42	1.89
7126623--7126647	3	8.3	3	100	0	50	32	0	0	68	0.90
7134122--7134321	35	5.8	34	83	5	249	39	17	22	21	1.93
7134122--7134300	35	5.2	35	85	2	263	38	17	22	20	1.93
7134122--7134323	69	2.9	69	93	0	341	39	17	22	20	1.93
7134579--7134617	15	2.8	13	82	14	51	38	12	5	43	1.65
7135520--7135577	19	3.0	19	80	7	64	58	0	1	39	1.08
7135680--7135720	19	2.2	19	86	4	57	46	7	19	26	1.76
7138816--7138858	21	2.0	23	81	9	54	44	11	11	32	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7142065--7142096	15	2.2	15	94	5	57	37	3	6	53	1.42
7142577--7142933	70	5.1	70	83	2	396	21	19	29	28	1.98
7142577--7142933	140	2.5	140	84	1	448	21	19	29	28	1.98
7144844--7145001	79	2.0	79	94	0	280	47	13	8	30	1.72
7158913--7158938	13	2.0	13	100	0	52	53	7	0	38	1.30
7165479--7165581	51	2.0	51	100	0	206	42	5	15	35	1.71
7168294--7168354	18	3.3	18	77	8	68	37	9	1	50	1.45
7168298--7168359	20	3.2	20	81	6	74	38	9	1	50	1.45
7170250--7170276	13	2.1	13	100	0	54	22	7	25	44	1.79
7173135--7173166	6	5.2	6	92	7	55	65	0	15	18	1.27

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126