genome.fa.s14.2.7.7.80.10.50.1000.104.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr12
Parameters: 2 7 7 80 10 50 1000
Length:  39383930

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  104  of  126  ( 15042 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31683272--31683421	50	3.0	51	83	4	205	25	16	28	30	1.96
31683422--31683509	46	2.0	44	84	8	115	25	17	23	34	1.96
31688779--31688810	17	1.9	16	93	6	55	28	0	6	65	1.16
31689065--31689098	14	2.4	14	90	0	50	32	0	2	64	1.08
31689230--31689262	15	2.3	15	89	5	50	18	6	6	69	1.30
31696858--31696890	17	1.9	17	93	0	57	75	9	0	15	1.03
31698173--31698213	18	2.3	19	83	12	59	21	4	2	70	1.18
31698182--31698219	18	2.1	18	90	0	58	23	5	2	68	1.23
31698231--31698281	3	16.7	3	76	11	50	33	7	0	58	1.27
31704060--31704124	19	3.2	20	86	10	71	35	18	7	38	1.80
31704046--31704117	19	3.5	20	80	15	83	38	16	8	36	1.79
31704072--31704124	19	2.7	19	91	5	79	37	15	9	37	1.79
31704493--31704705	44	4.9	43	67	6	131	17	25	29	26	1.98
31704484--31705503	88	11.8	88	76	8	750	21	25	25	27	1.99
31704520--31704663	45	3.2	45	67	3	130	17	26	27	28	1.98
31704636--31704781	73	2.0	73	90	0	229	16	29	23	30	1.96
31704709--31705510	88	9.1	88	83	3	853	22	24	23	28	2.00
31704709--31705510	175	4.6	176	81	3	841	22	24	23	28	2.00
31705360--31705498	44	3.2	43	64	4	107	20	21	29	28	1.98
31714628--31714653	4	6.5	4	100	0	52	26	23	0	50	1.50
31718487--31718536	22	2.2	24	82	7	59	20	6	6	68	1.33
31718795--31718843	20	2.5	20	93	0	80	46	12	18	22	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31719036--31719327	110	2.7	109	90	2	455	29	16	18	34	1.93
31721402--31722072	334	2.0	334	100	0	1342	32	19	23	24	1.97
31724579--31724625	25	2.0	24	87	8	69	85	6	2	6	0.82
31724743--31724865	43	2.9	43	84	7	144	31	15	26	26	1.96
31726040--31726421	50	7.6	50	71	5	243	32	24	19	22	1.97
31725978--31726421	100	4.4	100	87	0	611	32	24	19	23	1.97
31729186--31729595	110	3.8	110	92	2	668	30	17	18	34	1.94
31734394--31734465	30	2.4	29	81	6	83	61	2	2	33	1.25
31734414--31734515	11	9.6	11	69	22	67	58	1	2	36	1.24
31734397--31734567	42	4.4	37	85	12	193	62	1	2	33	1.15
31734410--31734481	30	2.4	30	85	0	108	59	2	2	34	1.26
31734474--31734574	37	2.8	36	88	7	143	60	0	1	37	1.08
31740690--31740820	56	2.3	57	84	2	165	45	0	4	49	1.28
31740784--31740833	26	2.0	26	88	4	75	52	4	0	44	1.20
31740993--31741044	16	3.2	16	81	10	70	30	25	3	40	1.73
31745811--31746703	228	3.9	228	91	0	1320	28	29	22	19	1.98
31745811--31746844	228	4.5	228	88	0	1300	29	27	23	19	1.98
31749218--31749244	3	9.0	3	100	0	54	66	0	0	33	0.92
31761504--31761565	29	2.1	29	85	5	81	32	9	8	50	1.65
31762773--31762817	20	2.2	20	92	7	74	46	0	13	40	1.43
31762921--31762973	3	17.7	3	76	0	52	64	3	5	26	1.33
31765602--31765655	16	3.4	16	94	0	90	33	0	35	31	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31765634--31765728	45	2.1	44	88	1	136	32	6	27	33	1.82
31765888--31765922	18	2.0	17	88	5	52	54	0	0	45	0.99
31766558--31766595	6	6.3	6	100	0	76	15	34	15	34	1.90
31772097--31772139	19	2.4	18	85	11	54	32	11	4	51	1.59
31773532--31773568	13	2.8	14	80	12	51	29	2	0	67	1.04
31774954--31775102	43	3.5	43	94	3	264	28	30	20	21	1.98
31774932--31775102	86	2.0	87	91	3	283	26	28	19	24	1.99
31775072--31775132	30	2.0	30	100	0	122	32	36	14	16	1.89
31775029--31775164	73	1.9	73	93	0	236	28	32	18	20	1.96
31775102--31775278	43	4.1	42	78	11	180	25	30	22	22	1.99
31774986--31775219	116	2.0	116	88	4	346	29	30	20	20	1.97
31775729--31775795	21	3.2	21	95	0	116	7	44	14	32	1.74
31780925--31781105	16	12.2	16	71	23	107	38	0	13	46	1.48
31780925--31781105	31	6.1	30	71	25	120	38	0	13	46	1.48
31780928--31781090	40	4.2	40	80	14	182	38	0	13	47	1.48
31780964--31781023	9	7.2	9	75	17	67	36	0	16	46	1.47
31780968--31781147	91	2.0	93	92	4	303	38	1	12	47	1.48
31781762--31781797	15	2.5	15	90	4	56	63	8	16	11	1.49
31789325--31789573	74	3.4	74	92	1	394	34	18	17	29	1.94
31790651--31790741	41	2.2	41	86	3	121	16	27	25	30	1.97
31790712--31790920	41	5.1	41	85	3	260	32	24	23	19	1.98
31791050--31791140	41	2.2	40	81	11	96	16	24	21	37	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31794035--31794081	22	2.1	22	88	0	67	68	2	4	25	1.19
31794942--31794987	16	2.8	17	83	6	58	60	0	0	39	0.97
31796090--31796250	85	1.9	85	80	12	188	25	21	23	29	1.99
31796314--31796600	51	5.8	50	73	11	216	29	25	17	27	1.97
31796361--31796645	46	6.0	46	74	8	230	28	24	17	29	1.97
31796317--31796651	97	3.5	97	84	3	397	28	25	17	28	1.98
31796951--31797006	24	2.3	24	90	0	94	30	25	10	33	1.90
31797501--31797527	13	2.1	13	100	0	54	85	0	0	14	0.61
31805059--31805125	22	3.2	22	66	30	65	28	25	5	40	1.79
31805045--31805128	40	2.1	40	100	0	168	28	25	4	41	1.75
31808173--31808227	3	18.7	3	81	3	67	65	1	3	29	1.20
31809543--31809575	11	2.8	12	86	9	50	6	0	15	78	0.93
31816330--31816423	48	2.0	48	85	8	129	18	12	28	40	1.87
31828902--31828960	28	2.2	29	79	14	72	55	1	3	38	1.26
31829112--31829194	3	27.7	3	76	9	71	60	1	2	36	1.18
31832691--31832738	21	2.3	21	88	0	69	25	22	22	29	1.99
31834134--31834302	83	2.0	83	90	0	266	34	13	28	23	1.93
31842853--31842958	42	2.5	42	89	0	158	17	3	47	31	1.66
31842853--31842976	42	3.0	41	81	11	130	20	4	44	29	1.72
31848917--31848957	22	1.9	21	85	5	55	7	26	12	53	1.64
31861906--31862004	47	2.1	47	85	9	130	61	4	3	31	1.29
31867167--31867231	30	2.2	29	81	8	76	30	27	6	35	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31867174--31867231	30	1.9	30	85	0	80	31	24	6	37	1.82
31871273--31871779	49	10.6	49	95	3	860	32	8	29	29	1.86
31871273--31871779	145	3.5	143	95	3	862	32	8	29	29	1.86
31874209--31874235	14	1.9	14	100	0	54	59	14	14	11	1.62
31888846--31889044	46	4.3	46	88	0	290	46	18	12	23	1.83
31888845--31889044	92	2.2	92	92	0	328	46	18	12	23	1.83
31889018--31889066	24	2.0	24	96	0	89	48	16	14	20	1.80
31888966--31889108	68	2.1	69	89	2	216	47	18	11	22	1.81
31888926--31889158	114	2.0	115	93	1	396	46	19	11	23	1.81
31889036--31889160	46	2.8	46	85	4	175	45	20	12	22	1.83
31889765--31889921	44	3.6	42	81	6	181	32	26	15	24	1.96
31891431--31891474	17	2.4	19	77	18	56	31	6	13	47	1.69
31905603--31905653	14	3.7	14	80	10	52	15	9	0	74	1.06
31921358--31921471	56	2.0	56	98	0	219	34	14	7	43	1.74
31921832--31921879	21	2.5	19	86	10	62	41	22	2	33	1.66
31921889--31921932	19	2.5	17	85	10	61	40	34	0	25	1.56
31931227--31931270	21	2.1	21	86	0	61	43	9	2	45	1.48
31934165--31934201	12	3.1	12	92	0	56	43	13	21	21	1.87
31941367--31941400	5	6.8	5	100	0	68	20	20	17	41	1.91
31941622--31941698	27	2.9	27	92	3	120	40	20	18	20	1.92
31941622--31941707	27	3.2	27	90	3	111	38	23	16	22	1.93
31942079--31942301	81	2.8	80	87	1	302	43	19	17	20	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31942079--31942300	27	8.2	27	83	3	250	43	19	17	19	1.88
31942637--31942780	28	5.2	28	81	1	166	27	22	19	30	1.98
31943381--31943425	21	2.1	21	87	0	63	44	11	2	42	1.52
31943419--31943443	11	2.3	11	100	0	50	28	16	0	56	1.41
31945966--31945994	5	5.8	5	100	0	58	20	20	17	41	1.90
31946216--31946292	27	2.9	27	92	3	120	40	20	18	20	1.92
31946216--31946301	27	3.2	27	90	3	111	38	23	16	22	1.93
31946673--31946895	81	2.8	80	87	1	302	43	19	17	20	1.89
31946673--31946894	27	8.2	27	83	3	250	43	19	17	19	1.88
31947231--31947374	28	5.2	28	81	1	166	27	22	19	30	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126