genome.fa.s14.2.7.7.80.10.50.1000.121.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr12
Parameters: 2 7 7 80 10 50 1000
Length:  39383930

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  121  of  126  ( 15042 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37515153--37515200	25	1.9	25	86	0	69	41	2	0	56	1.11
37521994--37522049	20	2.8	20	88	0	76	48	0	30	21	1.51
37528780--37528930	28	5.4	28	91	1	214	26	11	27	33	1.92
37530379--37530493	57	2.0	57	86	9	164	29	13	23	33	1.93
37537875--37538052	27	6.6	27	83	3	205	26	15	28	29	1.96
37537876--37538031	82	1.9	81	88	3	233	26	15	28	29	1.96
37537872--37538052	82	2.2	81	83	2	229	27	15	27	29	1.96
37550698--37550766	25	2.8	23	77	12	75	20	4	2	72	1.15
37552213--37552425	75	2.8	76	85	2	284	34	26	17	22	1.96
37564316--37564543	43	5.4	41	72	11	147	37	25	14	22	1.93
37564310--37564544	85	2.8	85	85	1	301	36	24	15	22	1.94
37565613--37565693	24	3.4	24	87	0	117	40	9	13	35	1.78
37565625--37565695	35	2.0	34	84	10	90	40	11	12	35	1.79
37570591--37570642	20	2.6	20	87	0	77	50	1	26	21	1.59
37583768--37583805	10	3.5	11	86	13	53	63	2	0	34	1.09
37590844--37590873	15	2.0	15	93	0	51	33	23	0	43	1.54
37593649--37593754	47	2.3	47	86	3	151	33	19	16	29	1.94
37593807--37593846	20	2.0	20	90	9	64	45	15	0	40	1.46
37595581--37595851	27	10.1	26	85	6	292	42	20	15	21	1.89
37595581--37595851	54	5.0	54	85	3	341	42	20	15	21	1.89
37595585--37595852	134	2.0	135	86	5	373	42	19	15	22	1.89
37596366--37596448	42	2.0	42	97	0	157	33	19	8	38	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37597449--37597512	26	2.5	26	76	0	74	28	21	17	32	1.96
37597592--37597792	28	7.2	29	84	6	247	25	23	19	30	1.98
37597592--37597792	84	2.4	83	85	2	285	25	23	19	30	1.98
37615073--37615105	17	1.9	17	88	11	50	27	27	12	33	1.92
37626030--37626361	166	2.0	166	98	0	646	29	12	21	36	1.90
37632841--37632993	28	5.6	27	89	4	216	30	28	13	28	1.94
37632841--37633018	56	3.2	55	87	2	230	31	28	12	26	1.93
37635884--37635931	12	4.0	12	97	0	87	14	8	2	75	1.13
37642005--37642069	20	3.2	20	71	16	53	40	16	20	23	1.92
37644663--37644688	13	2.0	13	100	0	52	76	7	0	15	0.99
37645770--37645877	6	17.7	6	67	10	58	72	3	17	6	1.21
37645756--37645875	12	10.0	12	68	19	63	70	3	17	8	1.25
37645839--37645895	14	4.1	15	73	13	59	73	1	15	8	1.16
37645838--37645895	27	2.1	27	87	6	82	72	1	17	8	1.18
37645839--37645889	21	2.4	21	76	0	57	76	1	15	5	1.07
37645958--37646063	48	2.2	47	85	9	135	59	1	24	14	1.45
37650373--37650443	25	2.9	24	79	6	88	23	22	18	35	1.96
37650376--37650452	25	3.1	24	77	7	82	24	19	19	36	1.95
37650373--37650483	50	2.2	50	80	6	127	26	20	19	33	1.97
37657352--37657380	15	1.9	15	100	0	58	27	27	13	31	1.94
37661250--37661299	25	2.0	25	100	0	100	28	28	4	40	1.74
37661241--37661310	25	2.5	30	73	23	89	30	24	4	41	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37671530--37672312	389	2.0	389	91	0	1278	30	20	16	32	1.95
37682882--37682926	15	2.9	16	83	12	58	60	4	0	35	1.17
37693854--37693878	12	2.1	12	100	0	50	32	32	20	16	1.94
37694323--37694379	28	2.0	28	100	0	114	24	17	10	47	1.79
37700264--37700375	50	2.2	50	80	3	127	22	23	23	31	1.99
37701730--37701768	20	2.0	20	90	10	62	15	23	5	56	1.59
37702075--37702207	51	2.5	54	79	8	148	25	28	18	27	1.98
37702075--37702212	56	2.6	50	79	7	141	25	27	19	27	1.99
37702320--37702364	22	2.1	22	84	12	58	48	13	6	31	1.68
37704935--37705234	150	2.0	150	99	0	591	37	17	14	31	1.90
37705698--37705728	14	2.2	14	94	0	53	38	0	41	19	1.51
37706489--37706535	24	1.9	25	83	12	62	40	19	10	29	1.85
37715813--37715842	14	2.1	14	93	0	51	40	0	43	16	1.48
37733093--37733163	25	2.9	24	79	6	88	23	22	18	35	1.96
37733096--37733172	25	3.1	24	77	7	82	24	19	19	36	1.95
37733093--37733203	50	2.2	50	80	6	127	26	20	19	33	1.97
37740072--37740100	15	1.9	15	100	0	58	27	27	13	31	1.94
37743970--37744019	25	2.0	25	100	0	100	28	28	4	40	1.74
37743961--37744030	25	2.5	30	73	23	89	30	24	4	41	1.74
37747900--37747929	12	2.4	13	94	5	53	36	0	0	63	0.95
37748056--37748112	30	1.9	30	96	0	105	56	12	3	28	1.52
37748157--37748204	22	2.2	22	88	7	71	54	6	20	18	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37748156--37748194	11	3.5	11	78	0	51	48	10	20	20	1.78
37748617--37748664	23	2.1	23	100	0	96	20	27	4	47	1.68
37750775--37750952	27	6.6	27	83	3	205	26	15	28	29	1.96
37750776--37750931	82	1.9	81	88	3	233	26	15	28	29	1.96
37750772--37750952	82	2.2	81	83	2	229	27	15	27	29	1.96
37758964--37759141	27	6.6	27	83	3	205	26	15	28	29	1.96
37758965--37759120	82	1.9	81	88	3	233	26	15	28	29	1.96
37758961--37759141	82	2.2	81	83	2	229	27	15	27	29	1.96
37760530--37760592	21	3.0	21	73	19	67	33	3	0	63	1.10
37760532--37760589	10	5.5	11	80	12	52	32	3	0	63	1.11
37760503--37760617	43	2.8	41	79	14	105	32	4	1	61	1.25
37761185--37761537	126	2.8	126	89	3	523	28	14	22	34	1.94
37765114--37765157	23	1.9	23	95	0	79	34	0	20	45	1.51
37765124--37765486	29	12.7	29	73	16	287	28	0	26	44	1.59
37765230--37765486	29	8.7	29	81	9	297	28	0	27	43	1.60
37765125--37765589	59	8.3	58	76	17	436	28	0	26	44	1.58
37765415--37765624	23	8.4	23	70	21	131	29	0	23	46	1.53
37765262--37765626	51	6.7	51	77	15	313	28	0	26	44	1.58
37765486--37765589	29	3.7	29	80	17	130	29	0	24	46	1.53
37765264--37765626	103	3.3	103	85	10	440	28	0	25	45	1.58
37765565--37765610	22	2.2	20	88	11	67	28	0	26	45	1.54
37765715--37765745	7	4.4	7	100	0	62	58	12	0	29	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37766367--37766411	23	2.0	22	95	0	72	22	13	15	46	1.80
37777307--37777474	56	3.0	56	100	0	336	37	5	19	37	1.75
37793529--37793713	79	2.3	81	83	9	229	25	27	22	24	2.00
37793529--37793713	40	4.7	40	80	12	211	25	27	22	24	2.00
37818645--37818692	24	2.0	24	91	0	78	20	31	18	29	1.97
37823972--37824554	40	14.6	40	94	1	938	27	28	20	24	1.99
37835337--37835372	15	2.5	14	91	8	63	33	0	0	66	0.92
37848226--37848448	39	5.7	40	86	7	273	25	22	27	24	2.00
37848226--37848448	79	2.8	81	85	8	282	25	22	27	24	2.00
37848226--37848481	79	3.3	79	82	9	224	26	21	27	24	1.99
37856943--37857020	38	2.1	35	81	11	86	32	19	11	37	1.87
37857854--37857887	16	2.2	15	94	5	59	8	0	5	85	0.75
37858202--37858264	21	3.0	21	85	2	81	31	3	31	33	1.74
37858213--37858245	11	3.1	11	82	8	50	33	0	36	30	1.58
37859344--37859385	10	4.3	10	78	6	50	28	11	23	35	1.91
37861269--37861331	24	2.7	22	81	13	65	7	17	1	73	1.16
37861270--37861322	21	2.5	21	80	14	56	7	18	0	73	1.06
37863501--37863559	20	3.0	20	71	0	55	23	22	15	38	1.92
37863511--37863570	30	2.0	31	83	3	77	18	23	16	41	1.90
37865719--37865783	22	2.9	22	88	2	85	35	33	3	27	1.73
37866833--37866884	27	1.9	27	96	0	95	44	15	19	21	1.87
37868667--37868865	90	2.2	90	100	0	398	30	14	17	38	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37870568--37870622	21	2.4	22	76	14	58	25	16	16	41	1.88
37872336--37872402	29	2.4	28	78	9	75	65	0	19	14	1.27
37872357--37872415	29	2.1	28	81	9	66	61	0	18	20	1.35
37874456--37874507	27	1.9	27	92	0	86	42	15	21	21	1.89
37878580--37878624	20	2.2	20	84	7	56	77	4	11	6	1.09
37895653--37895707	21	2.4	22	76	14	58	25	16	16	41	1.88
37898348--37898415	12	5.7	12	82	6	84	4	19	2	73	1.13
37898348--37898408	18	3.4	18	86	4	88	4	19	3	72	1.18
37898357--37898416	6	10.0	6	85	0	84	3	18	1	76	1.00
37898348--37898416	18	3.8	18	82	3	86	4	18	2	73	1.12

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126