genome.fa.s14.2.7.7.80.10.50.1000.67.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr12
Parameters: 2 7 7 80 10 50 1000
Length:  39383930

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  67  of  126  ( 15042 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19965067--19965126	27	2.2	27	82	8	68	48	1	0	50	1.11
19965436--19965466	12	2.7	12	95	5	55	54	9	0	35	1.33
19971324--19971357	13	2.6	13	85	0	50	64	0	14	20	1.28
19972244--19972287	12	3.7	12	79	8	54	70	2	25	2	1.10
19979460--19979493	9	3.7	9	88	4	50	29	14	23	32	1.94
19979569--19979755	54	3.5	53	88	2	257	33	16	25	24	1.96
19979892--19979990	29	3.3	29	90	2	153	18	15	25	41	1.89
19979892--19980015	29	4.2	29	84	7	106	16	16	24	42	1.88
19980008--19980083	30	2.6	29	78	10	75	23	11	26	38	1.89
19982599--19982716	41	3.1	39	71	22	108	25	2	27	44	1.67
19987489--19987520	10	2.8	12	81	18	50	37	9	9	43	1.69
20005401--20005450	25	2.0	25	88	3	75	40	20	18	22	1.92
20005415--20005496	25	3.3	25	81	3	85	32	17	23	26	1.96
20005453--20005507	25	2.2	25	90	0	83	27	21	21	29	1.99
20012027--20012127	29	3.5	29	78	5	105	27	13	23	34	1.93
20018758--20018810	22	2.4	22	90	0	88	39	20	13	26	1.89
20022557--20022592	18	2.1	17	89	5	54	5	52	41	0	1.24
20022874--20022898	6	4.2	6	100	0	50	0	52	48	0	1.00
20023602--20023627	5	5.2	5	100	0	52	42	19	19	19	1.90
20024386--20024445	30	2.0	31	83	9	79	40	1	38	20	1.62
20024739--20024769	9	3.4	9	90	0	53	38	22	12	25	1.90
20025298--20025356	30	2.0	30	96	0	109	28	5	11	54	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20027382--20027417	18	2.0	18	100	0	72	38	11	22	27	1.88
20027377--20027423	18	2.4	21	75	20	64	36	10	19	34	1.86
20040339--20040378	18	2.3	18	86	4	55	12	17	0	70	1.18
20040388--20040521	6	22.0	6	68	4	72	8	18	2	70	1.26
20042784--20042847	32	2.0	32	96	0	119	42	17	12	28	1.85
20043859--20044201	51	6.8	51	75	10	287	28	14	26	30	1.95
20043859--20044200	102	3.4	100	80	7	372	28	14	26	30	1.95
20051478--20051763	51	5.7	50	73	8	240	27	13	27	31	1.94
20051479--20051561	26	3.2	26	65	21	66	28	10	26	33	1.90
20051478--20051757	102	2.8	102	82	6	338	28	13	27	31	1.94
20054260--20054316	20	2.9	20	71	2	62	29	15	28	26	1.96
20079755--20079830	24	3.1	24	73	12	66	38	21	23	17	1.93
20079845--20079899	25	2.2	25	96	0	101	34	18	25	21	1.96
20082576--20082609	11	3.2	11	83	8	52	26	32	11	29	1.92
20085340--20085386	24	1.9	24	82	4	58	36	21	25	17	1.94
20085390--20085459	25	2.8	25	91	0	95	32	18	25	22	1.97
20093161--20093289	68	1.9	69	91	1	215	27	14	10	47	1.78
20096293--20096335	22	2.0	22	90	0	68	30	9	4	55	1.52
20101348--20101429	37	2.2	37	93	0	137	34	24	4	36	1.77
20101351--20101414	21	3.3	21	66	28	59	35	23	6	34	1.80
20110634--20110750	57	2.1	57	93	0	198	27	23	25	23	2.00
20111772--20111841	13	5.3	13	82	1	86	35	22	2	38	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20111771--20111867	39	2.5	38	80	6	104	37	18	3	41	1.66
20112612--20112636	13	1.9	13	100	0	50	72	0	20	8	1.10
20112656--20112694	18	2.2	18	86	9	53	28	5	2	64	1.28
20113010--20113047	14	2.7	14	95	0	67	28	23	7	39	1.83
20114080--20114151	28	2.6	28	84	0	90	33	23	20	22	1.97
20114491--20114724	27	8.7	27	81	6	215	18	19	20	41	1.91
20116078--20116149	28	2.6	28	84	0	90	33	23	20	22	1.97
20116489--20116722	27	8.7	27	81	6	215	18	19	20	41	1.91
20119391--20119728	43	7.9	43	91	0	444	27	29	18	25	1.98
20119391--20119728	171	2.0	172	85	2	457	27	29	18	25	1.98
20119375--20119754	86	4.4	87	82	10	376	27	28	18	25	1.98
20121761--20121981	86	2.6	86	82	5	241	42	13	9	33	1.78
20121829--20122013	86	2.2	86	86	2	255	42	15	8	34	1.76
20122213--20122534	168	1.9	168	87	2	477	45	16	10	27	1.80
20124711--20124767	28	2.0	28	83	6	71	35	42	1	21	1.63
20124710--20124787	15	5.3	14	69	15	50	34	39	2	23	1.68
20124773--20124818	21	2.1	22	88	4	67	39	41	0	19	1.52
20124800--20124847	15	3.3	15	82	5	62	45	35	0	18	1.50
20125055--20125102	15	3.3	15	79	5	53	43	35	2	18	1.62
20125456--20125723	41	6.5	41	81	4	155	32	27	19	21	1.97
20125443--20125723	82	3.4	81	78	5	255	30	27	19	22	1.98
20125490--20125718	123	1.9	123	84	0	314	30	26	19	23	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20135131--20135254	27	4.6	27	84	2	140	26	16	28	29	1.97
20135131--20135254	55	2.3	54	82	1	149	26	16	28	29	1.97
20144389--20144571	40	4.6	39	81	6	170	24	20	27	26	1.99
20144425--20144606	79	2.3	80	79	3	190	26	20	27	25	1.99
20149763--20149803	10	3.9	10	84	12	55	34	0	4	60	1.18
20155842--20155936	28	3.0	33	82	8	101	30	23	23	23	1.99
20155884--20155950	28	2.4	28	92	0	107	28	19	25	26	1.99
20156311--20156370	27	2.2	27	84	0	75	21	16	18	43	1.88
20156323--20156531	54	3.9	54	76	8	178	20	18	19	41	1.90
20156322--20156480	27	5.9	27	81	2	142	21	18	18	42	1.90
20156323--20156555	27	8.7	26	72	16	136	19	18	19	41	1.90
20156289--20156555	81	3.3	79	74	9	227	20	19	19	40	1.92
20158052--20158112	24	2.5	24	78	0	68	18	18	21	42	1.89
20158107--20158170	19	3.3	20	72	14	62	14	15	25	45	1.83
20165050--20165090	20	2.0	20	95	0	73	48	7	4	39	1.52
20168485--20168619	25	5.5	25	72	17	95	35	20	20	23	1.96
20168485--20168610	50	2.6	48	85	7	148	34	19	21	23	1.96
20168518--20168620	24	4.2	24	76	8	109	37	18	22	21	1.94
20182780--20182829	25	2.0	25	96	0	91	34	12	14	40	1.82
20184889--20184938	22	2.4	22	83	9	70	36	0	28	36	1.58
20199102--20199185	28	2.9	28	66	16	64	38	26	17	17	1.92
20208872--20208938	20	3.3	20	63	0	53	23	28	16	31	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20208843--20209054	80	2.6	79	84	1	271	21	27	17	33	1.96
20208864--20209086	120	1.9	120	83	0	293	21	26	17	34	1.95
20208832--20209090	40	6.5	40	82	0	241	20	26	18	33	1.96
20210854--20210919	26	2.5	24	75	15	60	15	13	39	31	1.86
20219031--20219195	29	5.9	28	74	9	131	32	28	14	24	1.95
20225791--20225817	14	1.9	14	100	0	54	29	25	29	14	1.95
20232249--20232277	14	2.0	15	93	6	51	34	20	20	24	1.97
20237495--20237529	15	2.2	16	90	10	54	60	0	0	40	0.97
20237555--20237619	17	3.8	17	67	15	53	56	1	0	41	1.08
20237548--20237612	15	4.2	15	76	17	62	56	1	0	41	1.08
20237547--20237584	14	2.8	13	88	11	58	57	0	0	42	0.98
20238069--20238121	14	3.8	14	94	0	97	33	20	7	37	1.81
20238647--20238771	65	1.9	65	93	0	214	21	23	8	47	1.77
20243745--20243770	9	2.9	9	100	0	52	19	0	11	69	1.18
20243848--20243943	33	3.2	33	65	27	93	30	9	15	44	1.78
20256754--20256931	27	6.6	27	84	3	205	29	28	15	26	1.96
20256775--20256930	82	1.9	81	88	3	233	29	28	15	26	1.96
20262915--20262977	9	6.8	9	82	13	65	36	3	38	22	1.70
20262923--20262976	19	2.8	19	81	10	65	35	1	38	24	1.66
20265062--20265121	28	2.1	29	81	9	70	51	0	8	40	1.32
20265075--20265113	20	2.0	20	84	0	51	46	0	10	43	1.37
20265108--20265227	10	12.6	10	79	7	83	65	2	5	27	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20265107--20265205	27	3.6	27	78	8	110	66	3	3	27	1.21
20265107--20265204	9	10.7	9	77	12	92	66	3	3	27	1.21
20265842--20265876	17	2.1	17	94	0	61	31	11	0	57	1.34
20266476--20266515	20	2.0	20	90	0	62	27	10	12	50	1.72
20266455--20266531	14	5.0	15	71	20	52	32	10	15	41	1.81
20267837--20267907	3	23.0	3	72	16	56	32	1	2	63	1.18
20267831--20267895	16	4.1	16	75	18	64	32	1	1	64	1.12
20267823--20267907	31	2.8	30	75	19	88	31	2	2	63	1.20
20272779--20272830	7	7.4	7	85	14	72	67	0	17	15	1.24
20274165--20274489	44	7.4	43	64	12	131	29	19	25	25	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126