genome.fa.s14.2.7.7.80.10.50.1000.78.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr12
Parameters: 2 7 7 80 10 50 1000
Length:  39383930

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  78  of  126  ( 15042 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23505905--23505958	20	2.7	20	82	0	63	24	20	18	37	1.94
23505905--23505978	30	2.5	30	86	8	98	21	20	18	39	1.93
23505905--23505969	20	3.2	20	71	16	53	23	21	16	38	1.93
23508530--23508583	20	2.7	21	85	5	60	25	25	14	33	1.95
23510477--23510535	20	3.0	21	87	5	70	23	28	15	32	1.95
23511812--23511847	19	1.9	19	88	5	56	5	19	2	72	1.17
23516637--23516675	20	1.9	21	89	5	62	66	2	5	25	1.25
23519101--23519300	100	2.0	100	90	0	310	36	19	10	33	1.86
23529589--23529682	47	2.0	47	95	0	170	31	27	14	25	1.95
23529908--23529995	44	2.0	44	97	0	167	23	23	22	29	1.99
23540936--23541004	34	2.0	34	100	0	138	34	17	18	28	1.94
23542360--23542421	10	5.9	10	74	10	52	33	32	3	30	1.74
23542360--23542422	21	3.0	21	88	2	90	33	33	3	30	1.74
23560041--23560226	40	4.7	40	86	5	218	26	26	21	25	1.99
23564473--23564508	17	2.1	17	100	0	72	22	27	5	44	1.75
23569267--23570387	47	24.0	47	98	0	1842	29	32	7	30	1.85
23576778--23576811	14	2.4	14	86	13	52	2	11	0	85	0.71
23576778--23576810	17	1.9	17	88	11	50	3	12	0	84	0.72
23594494--23594538	22	2.0	22	83	8	56	40	4	0	55	1.20
23595146--23595189	21	2.1	21	83	8	54	20	6	18	54	1.66
23601854--23601884	16	1.9	16	100	0	62	25	9	0	64	1.24
23603853--23603922	36	1.9	36	85	0	95	15	12	28	42	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23604833--23604858	12	2.2	12	100	0	52	57	0	7	34	1.27
23612622--23612704	36	2.3	36	87	4	114	16	15	27	39	1.89
23612651--23612738	36	2.4	36	83	3	106	20	13	26	39	1.90
23612659--23612747	36	2.5	36	83	0	97	19	11	28	41	1.85
23616065--23616172	55	1.9	56	92	1	182	35	6	13	44	1.70
23616856--23616906	19	2.6	19	77	20	52	52	0	3	43	1.19
23617351--23617436	39	2.2	39	79	4	93	43	6	11	38	1.68
23618093--23618167	22	3.4	22	75	10	64	62	1	1	34	1.12
23618106--23618167	15	4.0	15	72	14	54	64	1	1	32	1.13
23618091--23618152	7	8.9	7	77	5	63	61	0	1	37	1.06
23618099--23618153	8	7.4	8	76	15	55	63	0	1	34	1.05
23618099--23618153	15	3.7	15	85	2	58	63	0	1	34	1.05
23618937--23618992	27	2.0	28	86	10	80	53	5	1	39	1.34
23624798--23625309	128	4.0	128	99	0	1006	38	12	21	28	1.89
23626141--23626182	17	2.3	18	84	12	59	30	0	2	66	1.04
23630227--23630282	16	3.5	16	80	0	76	39	5	25	30	1.78
23630229--23630501	133	2.0	134	88	0	404	35	4	24	35	1.77
23630562--23630613	26	2.0	26	88	3	79	46	0	3	50	1.20
23630571--23630684	55	2.0	57	84	3	151	51	1	0	45	1.17
23630705--23630738	12	2.8	13	86	13	54	50	0	0	50	1.00
23630787--23630926	75	1.9	75	95	0	253	36	17	12	32	1.88
23631234--23631493	144	1.8	144	83	6	348	28	19	18	33	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23631733--23631808	20	3.8	20	75	8	73	15	1	35	47	1.54
23633523--23633602	31	2.6	31	92	4	126	18	12	21	47	1.81
23634446--23634479	12	2.8	13	86	13	54	50	0	0	50	1.00
23634500--23634608	55	1.9	57	85	3	150	45	0	1	51	1.18
23634515--23634608	26	3.5	25	72	13	80	45	1	2	51	1.20
23635836--23636649	3	271.3	3	100	0	1628	66	0	0	33	0.92
23639742--23639776	14	2.5	14	90	0	52	28	0	34	37	1.58
23639750--23639778	14	2.1	14	100	0	58	27	0	27	44	1.54
23644410--23644579	5	33.8	5	98	1	322	79	0	0	20	0.73
23644755--23644798	15	2.9	15	82	0	61	27	11	4	56	1.53
23644822--23644858	19	1.9	20	94	5	67	54	32	0	13	1.40
23650307--23650346	15	2.6	16	80	4	55	35	2	20	42	1.65
23650534--23650683	49	3.0	51	82	2	187	27	15	22	34	1.94
23651000--23651061	29	2.1	29	85	11	83	17	8	17	56	1.64
23652989--23653021	17	2.0	17	88	5	50	45	21	0	33	1.52
23653992--23654406	32	13.0	32	78	3	408	39	14	11	34	1.83
23654011--23654406	64	6.2	64	95	0	684	38	15	11	34	1.84
23662657--23662726	35	2.0	35	100	0	140	17	34	8	40	1.80
23668474--23668519	19	2.4	18	79	10	56	19	15	21	43	1.87
23674001--23674055	22	2.5	22	96	0	101	49	12	10	27	1.74
23679112--23679412	73	4.1	73	98	0	577	33	32	7	26	1.85
23681459--23681495	18	2.1	18	100	0	74	27	21	21	29	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23688604--23688642	17	2.2	19	86	9	55	23	7	20	48	1.75
23689970--23690014	19	2.4	19	100	0	90	17	20	0	62	1.33
23695890--23696025	50	2.7	51	86	4	186	25	15	28	30	1.96
23696038--23696124	45	1.9	45	92	0	147	25	16	24	34	1.95
23698997--23699060	4	15.8	4	98	1	119	26	0	25	48	1.51
23701264--23701321	17	3.3	18	72	18	68	60	15	0	24	1.35
23701273--23701336	17	3.7	17	78	17	78	59	14	0	26	1.35
23701270--23701337	34	2.0	34	100	0	136	58	14	0	26	1.36
23711822--23711857	17	2.1	17	94	0	63	33	30	0	36	1.58
23721546--23721649	42	2.5	42	84	3	120	17	19	15	48	1.82
23721581--23721663	21	4.0	21	76	6	69	15	20	18	45	1.85
23724363--23724431	28	2.4	29	78	7	79	30	21	18	28	1.97
23724312--23724586	57	4.8	57	77	7	238	28	22	16	33	1.95
23724423--23724572	29	5.3	29	67	13	96	28	23	14	34	1.94
23724723--23724881	53	3.0	52	79	6	194	28	26	10	34	1.90
23732377--23732409	17	1.9	17	88	11	50	42	0	15	42	1.46
23734592--23734679	45	2.0	45	83	0	113	57	4	2	35	1.31
23735275--23735310	18	2.1	18	90	10	58	58	0	0	41	0.98
23741213--23741284	33	2.2	33	89	0	90	27	26	18	27	1.98
23741213--23741318	33	3.3	32	80	7	83	28	28	16	27	1.97
23755732--23755792	12	5.4	12	73	21	53	47	0	3	49	1.18
23755729--23755762	12	2.8	13	86	13	54	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23755988--23756080	44	2.1	46	82	8	111	35	22	6	35	1.80
23756078--23756131	16	3.4	16	89	0	81	35	20	0	44	1.52
23756063--23756131	32	2.2	32	92	5	113	31	21	1	44	1.61
23757325--23757372	20	2.2	22	78	17	55	14	2	8	75	1.13
23757412--23757491	25	3.2	25	81	10	76	33	3	5	57	1.38
23757429--23757505	26	3.1	26	83	5	88	36	2	5	55	1.36
23758020--23758054	10	3.2	11	88	12	54	17	37	0	45	1.48
23758035--23758157	51	2.4	51	90	1	194	29	25	0	45	1.54
23760426--23760512	44	2.0	45	90	2	140	37	0	12	49	1.41
23760525--23761669	28	45.0	28	81	15	1013	45	24	2	28	1.64
23761358--23761451	23	4.0	20	83	14	62	46	22	1	29	1.59
23761416--23761644	23	10.1	20	75	17	107	47	23	0	29	1.52
23761700--23761917	116	1.9	116	94	0	382	37	9	8	44	1.67
23761893--23761934	18	2.4	17	84	7	57	45	9	0	45	1.36
23764947--23765298	126	2.8	125	87	2	528	32	22	15	29	1.95
23767395--23767445	24	2.1	24	82	7	59	33	1	13	50	1.53
23777284--23777371	29	3.0	29	75	5	88	42	3	20	34	1.69
23782587--23782719	40	3.3	40	88	2	187	23	27	23	25	2.00
23788721--23788835	61	1.9	60	85	5	162	48	6	4	40	1.50
23792089--23792179	43	2.1	43	87	2	130	35	10	9	43	1.73
23792453--23792809	43	8.3	43	86	2	468	21	17	30	30	1.96
23792497--23792819	173	1.9	174	90	1	524	22	16	30	30	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23792901--23792945	22	2.1	21	91	4	72	42	28	17	11	1.84
23796583--23796623	10	4.0	10	87	3	55	36	2	21	39	1.67
23806457--23806487	5	6.2	5	100	0	62	19	0	0	80	0.71
23810391--23810456	33	2.0	33	100	0	132	39	9	18	33	1.82
23812728--23812768	20	2.0	21	85	4	57	43	7	12	36	1.70
23817645--23817721	35	2.2	36	83	2	102	33	11	18	36	1.87
23820733--23820761	5	5.8	5	100	0	58	17	0	41	41	1.49
23821863--23821911	24	2.0	24	96	0	89	34	20	4	40	1.71
23825581--23825617	18	2.0	19	85	15	51	48	13	16	21	1.80
23834303--23834552	121	2.1	121	98	0	482	34	23	8	33	1.86

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126