genome.fa.s14.2.7.7.80.10.50.1000.82.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr12
Parameters: 2 7 7 80 10 50 1000
Length:  39383930

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  82  of  126  ( 15042 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25068703--25068771	34	2.0	34	94	0	120	23	24	18	33	1.97
25073825--25073972	46	3.2	46	74	13	144	29	27	18	23	1.98
25074376--25074435	30	2.0	30	86	0	84	30	23	8	38	1.84
25081375--25082289	93	9.8	93	99	0	1769	29	26	18	24	1.98
25085788--25086108	46	7.0	46	90	2	430	22	25	14	38	1.92
25087475--25087572	49	2.0	49	97	0	187	39	10	9	40	1.71
25088292--25088343	11	4.7	11	76	9	52	63	3	0	32	1.12
25090547--25090607	27	2.3	27	82	5	70	31	18	22	27	1.97
25092412--25092643	49	4.7	49	83	4	277	28	27	18	25	1.98
25092404--25092643	99	2.4	98	84	4	304	28	27	19	25	1.98
25092404--25092644	101	2.4	99	84	4	317	28	26	19	25	1.98
25095614--25095785	40	4.3	40	83	5	224	23	21	27	27	1.99
25104126--25104311	40	4.7	40	91	2	277	23	22	25	29	1.99
25107997--25108198	29	6.9	29	75	9	144	22	27	13	36	1.92
25108035--25108229	58	3.4	57	76	5	167	25	25	10	37	1.88
25108183--25108255	29	2.5	29	79	0	83	28	24	9	36	1.87
25108094--25108253	87	1.8	87	82	2	205	24	26	10	38	1.88
25108314--25108356	12	3.3	13	84	15	54	55	0	6	37	1.27
25112719--25112769	26	2.0	26	100	0	102	43	23	11	21	1.85
25112720--25112779	26	2.3	26	91	0	93	46	25	10	18	1.79
25114067--25114325	29	8.9	29	78	5	191	22	25	13	37	1.92
25114067--25114305	87	2.7	87	80	4	275	23	25	13	37	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25114169--25114334	87	1.9	88	83	6	221	22	24	15	37	1.92
25114828--25114882	28	1.9	29	82	10	69	47	20	1	30	1.60
25115694--25115751	29	2.0	29	100	0	116	31	17	10	41	1.83
25119295--25119340	20	2.3	21	81	11	60	45	2	15	36	1.58
25124950--25125067	41	2.8	42	78	3	123	24	17	26	31	1.97
25155443--25155559	40	2.9	41	84	3	166	25	27	23	23	2.00
25155450--25155591	40	3.6	40	85	2	135	26	28	22	23	1.99
25163534--25163677	40	3.6	40	83	2	148	25	27	22	24	2.00
25167799--25167838	20	2.1	19	95	4	71	55	0	17	27	1.43
25171037--25171197	27	6.0	27	88	0	196	31	19	5	42	1.75
25171017--25171185	54	3.1	54	83	0	140	34	19	6	39	1.78
25171037--25171197	81	2.0	81	85	2	216	31	19	5	42	1.75
25171233--25171355	27	4.6	27	85	3	167	39	21	8	29	1.84
25171200--25171355	54	2.9	54	82	3	172	37	21	10	30	1.87
25171233--25171382	81	1.9	81	84	5	205	40	21	8	29	1.83
25171233--25171467	27	8.7	26	77	10	145	39	20	8	31	1.83
25171233--25171440	54	3.8	54	79	5	161	40	20	8	31	1.81
25172368--25172436	25	2.8	24	80	10	77	24	24	21	28	1.99
25172368--25172449	25	3.4	23	80	12	76	28	21	21	28	1.99
25172368--25172449	24	3.4	24	83	5	85	28	21	21	28	1.99
25172658--25172736	31	2.5	31	97	0	149	29	18	25	26	1.98
25175206--25175299	47	2.0	47	95	0	170	34	11	18	36	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25177842--25177905	32	2.0	32	93	6	112	28	21	20	29	1.98
25181055--25181097	21	2.1	20	82	4	50	72	9	11	6	1.29
25185409--25185572	40	4.1	40	86	0	220	35	23	15	25	1.94
25185409--25185566	80	2.0	80	89	0	244	34	22	16	25	1.95
25189107--25189135	15	1.9	15	100	0	58	41	0	0	58	0.98
25189994--25190047	28	1.9	28	85	7	74	9	20	3	66	1.35
25190724--25190753	8	3.8	8	90	0	51	53	20	23	3	1.60
25191404--25191540	60	2.3	59	81	8	143	29	19	24	26	1.98
25196001--25196137	60	2.3	60	80	11	147	29	18	24	26	1.98
25197035--25197123	29	3.1	28	88	7	135	26	13	29	30	1.94
25203409--25203608	100	2.0	100	100	0	400	28	22	8	42	1.81
25205900--25206173	46	6.0	46	96	0	478	22	23	14	38	1.92
25209162--25209216	28	2.0	28	96	0	101	32	21	16	29	1.95
25210768--25210835	29	2.3	29	82	10	84	29	7	5	57	1.50
25216636--25216703	30	2.2	31	84	2	84	26	20	7	45	1.77
25218828--25218876	21	2.2	23	92	7	84	40	10	18	30	1.84
25219850--25220089	43	5.6	43	80	5	245	28	17	24	29	1.97
25219877--25220084	85	2.4	85	88	4	294	27	16	24	31	1.97
25224248--25224403	39	4.0	39	80	5	190	45	20	2	31	1.65
25228557--25228645	39	2.3	39	82	0	106	19	19	28	33	1.96
25229851--25229879	14	2.1	14	100	0	58	27	13	13	44	1.82
25233346--25233426	20	4.1	19	80	6	81	11	30	20	37	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25233349--25233425	40	1.9	40	83	0	100	11	32	20	35	1.89
25249919--25249981	21	3.0	21	76	2	63	17	0	46	36	1.49
25249922--25249973	7	7.4	7	84	0	59	15	0	48	36	1.45
25251982--25252109	5	25.6	5	100	0	256	60	0	0	39	0.97
25252268--25252330	21	3.0	21	79	11	65	19	1	7	71	1.19
25252275--25252346	21	3.4	19	74	16	54	20	2	9	66	1.33
25254181--25254225	22	2.1	21	91	4	72	42	28	17	11	1.84
25259112--25259190	39	2.0	39	92	0	131	25	18	13	41	1.88
25266774--25266835	32	1.9	34	81	15	78	14	6	4	74	1.19
25267911--25267942	11	3.1	11	82	17	50	46	0	9	43	1.35
25268912--25269040	22	5.9	22	79	0	132	16	27	17	39	1.90
25268917--25269040	66	1.9	66	89	0	194	15	26	16	41	1.88
25275384--25275408	13	1.9	13	100	0	50	56	8	4	32	1.47
25278939--25279021	25	3.3	25	80	6	96	21	19	24	34	1.96
25278926--25279032	50	2.1	50	84	0	151	21	16	25	36	1.94
25278926--25279051	50	2.5	50	79	7	148	22	16	24	36	1.94
25282917--25283010	49	1.9	49	95	0	170	32	6	23	37	1.80
25283743--25283824	26	3.2	26	69	17	73	47	3	2	46	1.33
25285864--25285993	50	2.6	50	81	0	143	26	21	28	23	1.99
25288099--25288142	23	2.0	20	87	12	61	47	11	0	40	1.39
25290076--25290119	4	11.2	4	95	4	81	25	0	27	47	1.52
25300012--25300084	33	2.2	33	92	0	128	46	15	8	30	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25303714--25303760	25	1.9	24	83	12	60	57	0	2	40	1.11
25303714--25303767	25	2.2	25	80	12	58	55	0	5	38	1.23
25304440--25304497	29	2.0	29	83	6	73	50	12	5	32	1.62
25304440--25304500	30	2.1	29	84	9	79	50	11	4	32	1.60
25311916--25312028	43	2.6	43	83	2	138	26	17	24	30	1.97
25325975--25326023	17	2.9	17	78	3	55	55	28	0	16	1.42
25327372--25327433	30	2.1	30	85	11	83	35	0	0	64	0.94
25327372--25327433	29	2.1	31	85	11	85	35	0	0	64	0.94
25329625--25329680	25	2.2	26	78	6	62	21	32	17	28	1.96
25330667--25330786	55	2.2	56	86	1	161	20	23	30	26	1.98
25337074--25337167	25	3.8	25	80	5	84	21	27	20	30	1.98
25337097--25337169	25	2.9	25	83	4	85	20	30	19	30	1.97
25338152--25338270	56	2.1	56	84	0	148	21	25	27	25	1.99
25339333--25339379	23	2.0	23	100	0	94	31	12	21	34	1.91
25339502--25339552	26	2.0	26	96	0	93	37	1	9	50	1.47
25347003--25347087	46	1.9	43	85	7	116	23	16	27	32	1.96
25350316--25350373	9	6.4	9	91	0	89	39	25	10	24	1.87
25350316--25350373	18	3.2	18	95	0	98	39	25	10	24	1.87
25350316--25350373	27	2.1	27	96	0	107	39	25	10	24	1.87
25351353--25351382	12	2.4	13	94	5	53	50	0	0	50	1.00
25351353--25351415	13	5.1	13	76	18	53	50	0	0	49	1.00
25371240--25371264	13	1.9	13	100	0	50	72	28	0	0	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25372049--25372090	22	1.9	22	85	9	59	28	2	0	69	1.01
25377448--25377510	31	2.0	31	100	0	126	33	31	12	22	1.91
25378079--25378103	13	1.9	13	100	0	50	32	0	16	52	1.44
25381684--25381726	10	4.1	10	82	8	50	11	11	2	74	1.17
25381845--25381875	15	2.0	16	93	6	55	51	6	0	41	1.27
25382639--25382705	21	3.2	20	84	12	66	73	4	0	22	1.01
25382666--25382707	11	3.9	11	78	6	50	76	7	0	16	1.00
25382661--25382706	21	2.2	21	92	0	74	78	4	0	17	0.91
25383611--25383860	43	5.8	43	84	5	299	27	34	16	21	1.94
25383611--25383830	87	2.5	86	86	5	300	26	35	15	22	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126