genome.fa.s14.2.7.7.80.10.50.1000.102.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr12
Parameters: 2 7 7 80 10 50 1000
Length:  39383930

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  102  of  126  ( 15042 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31148364--31148457	41	2.3	41	79	0	98	28	17	23	30	1.97
31148582--31148736	69	2.2	71	83	5	190	31	10	14	43	1.80
31149715--31149768	21	2.6	21	96	0	99	29	22	27	20	1.98
31150396--31150472	9	8.4	9	83	8	84	41	25	9	23	1.84
31158538--31158650	19	5.9	19	74	17	92	27	1	4	66	1.21
31162242--31162290	19	2.5	19	80	3	53	40	0	12	46	1.41
31172682--31172741	10	6.6	9	74	16	52	66	1	3	28	1.17
31172783--31172826	20	2.2	20	80	15	56	61	0	4	34	1.16
31172914--31172965	10	5.3	10	76	4	52	71	1	0	26	0.97
31172895--31172967	37	2.0	37	83	5	94	67	2	1	28	1.13
31172893--31173012	47	2.6	45	76	10	116	65	3	4	26	1.26
31172952--31172984	17	1.9	17	88	11	50	78	0	6	15	0.93
31175872--31175975	43	2.4	43	82	4	113	26	17	19	36	1.94
31176135--31176192	25	2.3	25	84	0	71	24	10	29	36	1.88
31176174--31176247	25	2.9	25	80	8	78	36	8	20	35	1.82
31177838--31177923	40	2.1	41	93	4	147	22	29	22	26	1.99
31180827--31180957	22	5.9	22	74	3	136	34	16	19	29	1.94
31180787--31180934	67	2.2	68	81	2	172	37	16	17	28	1.91
31180832--31180957	45	2.8	45	87	0	198	34	15	19	29	1.93
31181536--31181599	17	3.8	17	83	8	58	21	4	23	50	1.68
31181587--31181653	18	3.7	18	77	0	71	25	11	14	47	1.79
31186037--31186139	20	5.2	20	64	13	68	29	19	32	19	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31186008--31186139	40	3.3	40	92	0	219	31	18	29	20	1.96
31190158--31190201	21	2.1	21	84	16	56	52	6	0	40	1.28
31191039--31191069	5	6.4	5	92	7	55	38	0	0	61	0.96
31193857--31193897	21	2.0	21	85	0	55	29	39	29	2	1.70
31194794--31194855	32	2.0	32	96	3	117	48	11	6	33	1.65
31199855--31199906	23	2.2	24	89	3	79	1	9	7	80	0.97
31201888--31202171	126	2.3	125	88	0	406	29	18	17	34	1.94
31202217--31202680	97	4.9	96	84	9	556	39	16	2	41	1.63
31211321--31211364	23	1.9	22	82	17	54	36	25	0	38	1.56
31211411--31211497	45	1.9	45	95	0	156	34	24	16	25	1.95
31211518--31211694	51	3.5	51	77	3	196	33	28	15	23	1.95
31217494--31217916	138	3.1	138	90	0	675	40	8	5	45	1.57
31220049--31220137	44	2.0	43	85	8	117	31	23	19	25	1.98
31224650--31224795	40	3.7	40	82	3	177	32	23	13	30	1.92
31225239--31225274	18	1.9	19	88	5	56	44	2	19	33	1.65
31227103--31227130	12	2.3	12	100	0	56	42	7	7	42	1.59
31227878--31227910	17	2.0	16	94	5	57	36	0	3	60	1.12
31231943--31232078	40	3.4	40	78	6	150	36	19	22	22	1.95
31232112--31232268	41	3.8	41	88	1	233	19	21	31	27	1.98
31232112--31232268	83	1.9	83	89	0	242	19	21	31	27	1.98
31232819--31232884	28	2.4	27	80	17	73	25	0	37	36	1.57
31232789--31232907	7	17.0	7	68	13	57	21	0	39	37	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31233014--31233055	16	2.5	17	92	7	68	54	0	0	45	0.99
31238819--31239042	43	5.2	42	87	1	286	28	17	26	27	1.98
31238819--31239055	86	2.8	85	87	1	321	28	17	27	26	1.97
31240591--31240635	3	14.3	3	93	4	72	31	0	2	66	1.04
31242953--31242995	19	2.3	19	84	8	52	23	20	16	39	1.92
31244861--31245125	144	1.8	144	85	0	368	29	16	21	32	1.95
31245363--31245408	17	2.6	18	86	6	58	80	0	15	4	0.86
31245741--31245925	97	2.0	95	88	6	279	27	17	7	48	1.74
31246824--31248032	46	26.3	46	87	1	1548	28	16	25	29	1.97
31249645--31249669	3	8.3	3	100	0	50	32	0	0	68	0.90
31252190--31252214	11	2.3	11	100	0	50	32	0	0	68	0.90
31256884--31257195	25	12.5	25	66	1	104	21	16	26	35	1.94
31256884--31257195	50	6.2	50	81	1	338	21	16	26	35	1.94
31256898--31257170	150	1.8	150	86	1	395	21	16	27	35	1.94
31260391--31260435	20	2.2	21	88	4	65	51	11	13	24	1.73
31268927--31268956	10	3.1	10	95	4	53	36	0	10	53	1.35
31269160--31269237	37	2.1	37	85	0	102	14	14	29	42	1.84
31282690--31282812	57	2.1	57	85	4	158	43	6	21	28	1.77
31283276--31283309	17	2.0	17	88	11	52	5	26	0	67	1.13
31284069--31284159	38	2.4	38	80	7	112	30	15	17	36	1.91
31285867--31285904	19	2.0	19	89	0	58	55	7	5	31	1.51
31286184--31286227	21	2.0	21	82	8	52	63	4	6	25	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31286381--31286435	23	2.3	25	75	15	62	49	3	12	34	1.59
31286711--31286758	24	2.0	25	87	4	71	16	6	2	75	1.11
31303063--31303156	48	2.0	46	95	2	161	23	0	52	23	1.47
31316516--31316551	17	2.1	17	90	10	56	77	5	11	5	1.10
31316507--31316559	20	2.7	20	82	5	63	81	5	9	3	0.98
31316648--31316761	57	2.0	56	98	1	219	28	26	14	31	1.94
31317116--31317180	31	2.1	31	97	0	121	44	13	7	33	1.73
31320404--31320442	13	3.1	13	81	7	53	41	15	0	43	1.46
31329619--31329680	30	2.1	30	100	0	124	29	9	9	51	1.66
31333455--31333520	33	2.0	34	85	8	93	56	4	6	33	1.44
31335450--31335661	100	2.1	100	85	1	282	25	18	24	32	1.97
31335448--31335642	50	3.9	50	74	2	158	24	18	24	32	1.97
31335497--31335661	50	3.3	50	73	8	147	25	20	24	29	1.99
31335764--31335881	44	2.7	44	85	0	146	25	22	20	31	1.98
31335878--31335918	19	2.2	19	100	0	82	21	14	14	48	1.80
31336002--31336485	44	11.0	44	71	9	317	27	20	18	33	1.96
31335897--31336466	175	3.3	175	86	4	747	27	20	18	33	1.96
31335953--31336485	88	6.0	88	81	6	553	27	20	18	33	1.96
31336476--31336712	129	1.8	129	89	0	375	23	25	17	33	1.96
31338890--31338991	6	16.7	6	83	4	105	15	4	11	67	1.38
31338886--31338994	50	2.2	51	86	1	148	14	5	11	68	1.36
31338896--31338985	44	2.0	44	84	0	117	15	4	12	67	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31339654--31339710	25	2.2	27	84	12	75	56	7	15	21	1.63
31347223--31347348	50	2.5	51	70	8	123	27	21	22	28	1.99
31347479--31347716	129	1.8	130	90	2	381	28	21	19	30	1.97
31347704--31348896	127	9.3	128	92	1	1838	25	23	18	31	1.98
31347714--31348896	256	4.6	255	90	1	1841	25	23	18	32	1.97
31349877--31349909	17	1.9	17	93	0	57	15	15	0	69	1.19
31360435--31360516	42	1.9	43	87	2	121	37	20	20	20	1.94
31362715--31362769	19	2.9	19	71	15	51	63	1	0	34	1.05
31362724--31362778	29	1.9	29	85	10	78	63	1	1	32	1.15
31367472--31367523	24	2.2	24	82	6	61	65	3	1	28	1.21
31370448--31370530	29	2.9	28	76	3	85	32	8	13	45	1.73
31375106--31375251	34	4.3	34	78	3	150	31	13	13	41	1.83
31375358--31375550	45	4.3	45	78	2	156	24	18	21	35	1.96
31382853--31383073	96	2.3	96	84	2	282	39	2	18	39	1.63
31383116--31383403	126	2.3	126	91	0	450	34	19	19	26	1.96
31387094--31387136	18	2.4	18	88	0	59	44	9	27	18	1.80
31388944--31389021	33	2.3	33	85	12	106	46	1	29	23	1.60
31388944--31389021	11	7.1	10	82	15	75	46	1	29	23	1.60
31394403--31394437	3	11.7	3	100	0	70	68	0	0	31	0.90
31394545--31394570	3	8.7	3	100	0	52	69	0	0	30	0.89
31397898--31397935	19	2.0	19	100	0	76	31	5	21	42	1.75
31405543--31405591	25	2.0	25	87	0	71	34	18	10	36	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31406366--31406685	97	3.3	96	85	3	412	43	2	17	36	1.63
31406721--31406808	33	2.7	33	70	10	81	59	0	2	38	1.10
31407237--31407262	11	2.4	11	100	0	52	57	0	0	42	0.98
31407241--31407281	18	2.4	17	87	4	55	51	0	0	48	1.00
31407439--31407517	39	2.0	40	85	5	106	24	26	24	25	2.00
31408499--31408534	17	2.1	18	89	5	56	13	36	30	19	1.91
31412662--31412700	17	2.3	17	90	0	60	23	23	28	25	1.99
31419732--31419827	47	2.0	47	93	0	165	41	5	5	47	1.48
31423010--31423117	43	2.5	43	86	1	144	33	24	14	27	1.94
31423232--31423314	31	2.7	30	76	7	87	44	16	8	30	1.78

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126