genome.fa.s14.2.7.7.80.10.50.1000.103.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr12
Parameters: 2 7 7 80 10 50 1000
Length:  39383930

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  103  of  126  ( 15042 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31423232--31423325	31	3.1	30	70	10	82	46	17	7	28	1.74
31425666--31426044	190	2.0	190	96	0	695	32	14	15	37	1.88
31426976--31427020	12	3.9	12	80	11	58	46	0	4	48	1.22
31426976--31427028	22	2.4	22	96	0	97	45	1	3	49	1.31
31426971--31427096	58	2.1	60	83	2	157	44	0	3	50	1.26
31427274--31427325	16	3.2	16	78	5	61	32	23	1	42	1.65
31428479--31428586	14	7.7	14	73	0	81	36	21	17	25	1.95
31428624--31428678	27	2.0	26	86	6	74	20	32	23	23	1.98
31428628--31428687	28	2.2	27	90	3	93	23	31	21	23	1.98
31428696--31428806	34	3.3	34	85	1	152	27	18	24	28	1.98
31428746--31428821	33	2.5	31	78	8	75	28	21	26	23	1.99
31430025--31430071	21	2.2	21	92	0	76	44	4	12	38	1.62
31434386--31434521	69	2.0	69	89	0	209	29	25	15	30	1.96
31434383--31434540	69	2.3	69	84	0	208	27	25	17	29	1.97
31445477--31445699	111	2.0	111	95	0	403	30	12	4	52	1.57
31447892--31447927	18	2.0	18	88	0	54	22	36	19	22	1.95
31449508--31449598	45	2.0	45	100	0	182	32	13	17	36	1.88
31453036--31453060	5	5.0	5	100	0	50	80	0	0	20	0.72
31454052--31454089	20	1.9	20	88	0	58	18	28	13	39	1.88
31454123--31454173	20	2.5	20	81	9	59	7	29	25	37	1.84
31456965--31457028	32	2.0	32	90	0	101	20	17	20	42	1.90
31460294--31460348	29	2.0	27	82	7	65	58	1	9	30	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31461522--31461556	18	1.9	18	88	0	52	20	22	28	28	1.98
31461942--31462053	44	2.5	44	82	2	127	29	20	20	29	1.98
31462080--31463237	44	26.5	42	73	11	427	30	25	15	28	1.96
31462284--31463239	133	7.2	133	93	0	1605	29	25	16	28	1.96
31462088--31463239	399	2.9	397	89	3	1660	30	25	15	28	1.96
31473766--31473811	23	2.0	23	100	0	92	21	39	13	26	1.90
31475073--31475147	19	3.8	19	84	6	96	38	16	9	36	1.80
31475084--31475146	21	3.1	21	86	9	103	39	14	9	36	1.78
31479569--31480061	120	4.1	120	96	0	871	43	2	5	49	1.36
31479770--31479804	18	2.0	17	88	5	52	45	0	0	54	0.99
31479890--31479924	18	2.0	17	88	5	52	45	0	0	54	0.99
31480010--31480044	18	2.0	17	88	5	52	45	0	0	54	0.99
31480209--31480299	45	2.0	45	85	2	121	37	28	6	27	1.82
31480280--31480348	16	4.2	16	92	3	120	36	37	1	24	1.65
31480280--31480348	33	2.1	32	94	2	120	36	37	1	24	1.65
31494345--31494457	24	4.8	24	72	3	77	29	43	13	14	1.83
31494345--31494401	12	4.8	12	84	0	69	26	45	14	14	1.82
31494346--31494457	35	3.2	36	79	6	113	29	43	13	13	1.82
31496080--31496147	26	2.8	25	80	6	68	25	20	14	39	1.91
31499144--31499195	17	2.9	17	75	13	52	65	3	0	30	1.10
31502328--31502361	16	2.1	17	88	5	52	47	0	11	41	1.40
31502350--31502398	9	5.6	9	79	13	57	57	0	2	40	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31509183--31509210	14	2.0	14	100	0	56	50	14	21	14	1.78
31510131--31510266	69	2.0	69	88	0	200	33	23	24	18	1.97
31513064--31513179	42	2.7	43	77	4	119	30	26	19	23	1.98
31518072--31518129	18	2.8	20	80	15	57	43	1	1	53	1.21
31533781--31533831	25	2.0	25	92	0	84	39	9	0	50	1.35
31536235--31536298	18	3.6	17	78	14	58	64	1	3	31	1.19
31542944--31543010	29	2.3	29	82	12	84	47	1	1	49	1.19
31544032--31544070	20	2.0	19	85	5	51	48	5	5	41	1.47
31545315--31545357	20	2.0	21	86	8	61	44	2	2	51	1.27
31546889--31547010	60	2.0	60	98	0	235	53	9	12	24	1.68
31550937--31550976	21	1.9	21	84	0	53	32	27	7	32	1.85
31552267--31552316	20	2.5	19	81	12	55	52	2	0	46	1.12
31552280--31552323	20	2.2	20	84	4	54	50	4	2	43	1.35
31555722--31555904	43	4.3	43	91	0	294	30	31	18	20	1.96
31559289--31559359	21	3.3	22	72	21	62	66	12	5	15	1.42
31559970--31560022	9	5.4	9	76	12	52	43	3	0	52	1.19
31560352--31560407	18	2.9	18	78	14	58	51	16	17	14	1.76
31560609--31560648	21	1.9	21	89	0	62	42	37	0	20	1.52
31560636--31560689	14	3.8	14	78	4	54	50	29	0	20	1.49
31560699--31560747	14	3.5	14	80	0	53	48	32	0	18	1.48
31560929--31561296	41	9.0	41	86	0	477	28	30	19	21	1.97
31573497--31573534	20	2.0	19	90	10	60	50	10	7	31	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31575890--31576079	29	6.6	30	71	13	116	22	15	11	50	1.75
31575901--31576056	58	2.7	57	78	7	147	21	16	10	51	1.75
31576018--31576081	28	2.3	28	83	2	76	26	15	9	48	1.75
31577031--31577120	37	2.4	36	81	7	101	28	6	20	44	1.76
31578109--31578170	20	3.1	20	85	0	79	48	8	8	35	1.62
31578109--31578196	40	2.2	40	82	8	99	47	10	9	32	1.69
31579400--31579447	25	1.9	25	83	8	62	29	10	31	29	1.90
31585155--31585194	18	2.0	21	86	13	59	62	0	2	35	1.09
31585614--31585649	16	2.3	16	90	4	56	25	30	0	44	1.54
31588355--31588842	51	9.6	51	75	11	400	23	18	26	30	1.98
31588355--31588842	101	4.8	101	97	1	899	23	18	26	30	1.98
31588764--31588844	26	3.2	26	62	28	64	23	14	28	33	1.94
31588846--31588940	45	2.1	45	90	0	154	27	18	23	30	1.98
31591586--31591697	50	2.3	50	96	1	208	46	24	7	22	1.76
31592272--31592348	20	3.8	20	77	3	73	38	22	25	12	1.90
31593291--31593349	21	2.8	20	80	14	57	55	3	0	40	1.16
31593332--31593474	11	14.4	11	72	22	79	61	0	2	36	1.08
31593331--31593484	38	4.0	37	93	5	245	62	0	1	35	1.07
31593458--31593504	17	2.8	17	83	0	58	61	0	0	38	0.96
31594687--31594722	12	3.1	12	96	4	65	16	19	8	55	1.66
31595426--31595458	12	2.7	13	86	13	52	39	9	3	48	1.50
31595686--31595745	29	2.0	30	90	3	95	46	13	6	33	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31597136--31597160	5	5.0	5	100	0	50	20	0	0	80	0.72
31598293--31598348	24	2.3	24	84	6	69	28	5	5	60	1.41
31610018--31610427	27	15.2	27	83	1	455	41	20	17	19	1.90
31610822--31610888	29	2.2	31	86	7	93	28	14	14	41	1.86
31622530--31622588	21	2.8	20	80	14	57	54	3	1	40	1.27
31622738--31622798	29	2.2	29	91	5	99	68	0	1	29	0.99
31622571--31622781	39	5.4	39	97	0	386	55	0	4	39	1.21
31623271--31623305	17	2.1	17	88	0	52	40	2	0	57	1.14
31625963--31626001	18	2.2	18	86	4	53	56	7	23	12	1.62
31628852--31628887	15	2.3	15	90	4	54	27	8	13	50	1.71
31631575--31631666	45	2.0	47	93	4	161	43	16	6	33	1.73
31631575--31631649	25	3.2	25	76	18	97	44	17	8	30	1.77
31631593--31631662	20	3.2	20	70	18	68	44	14	5	35	1.69
31632016--31632050	16	2.2	16	100	0	70	25	28	20	25	1.99
31632033--31632141	41	2.7	41	83	0	128	29	22	20	28	1.98
31634770--31634922	27	5.7	27	82	1	173	47	22	11	17	1.80
31634770--31634920	81	1.9	81	87	2	223	48	21	11	17	1.80
31635105--31635158	26	2.1	26	92	0	90	18	24	24	33	1.97
31635266--31635329	28	2.3	28	83	0	74	23	20	21	34	1.97
31639381--31639423	17	2.4	18	84	7	52	0	23	6	69	1.12
31641241--31641319	9	8.6	9	84	5	104	39	26	8	25	1.85
31644331--31644463	62	2.3	57	85	8	178	40	2	3	53	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31644346--31644462	58	2.0	62	88	6	179	41	2	3	52	1.32
31645575--31645626	9	5.6	9	80	8	59	44	28	5	21	1.75
31645573--31645626	20	2.8	20	86	5	76	46	27	5	20	1.73
31646761--31646800	16	2.5	16	92	8	64	27	5	32	35	1.79
31647698--31647728	16	1.9	16	93	0	53	51	0	0	48	1.00
31651684--31651743	26	2.3	27	85	2	77	46	11	10	31	1.73
31656836--31656865	3	10.3	3	92	7	53	36	0	0	63	0.95
31661383--31661429	3	15.7	3	95	0	85	31	2	0	65	1.04
31663364--31663390	2	13.5	2	100	0	54	48	0	0	51	1.00
31671022--31671105	2	42.0	2	100	0	168	0	50	0	50	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126