genome.fa.s14.2.7.7.80.10.50.1000.75.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr12
Parameters: 2 7 7 80 10 50 1000
Length:  39383930

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  75  of  126  ( 15042 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22458457--22458575	23	5.2	23	81	2	150	32	26	18	21	1.97
22458457--22458578	46	2.7	46	88	0	181	32	26	18	22	1.97
22458804--22458842	18	2.2	17	86	13	53	46	20	0	33	1.51
22462200--22462246	3	15.7	3	95	0	85	2	31	0	65	1.04
22464055--22464083	3	9.7	3	100	0	58	34	0	31	34	1.58
22467247--22467283	6	6.2	6	93	0	56	48	40	0	10	1.38
22471758--22471791	16	2.1	16	89	10	52	32	0	5	61	1.20
22472074--22472136	27	2.3	27	81	13	76	36	4	1	57	1.30
22472341--22472391	19	2.7	19	82	8	61	43	1	1	52	1.23
22472471--22472784	164	2.0	160	85	7	431	45	3	6	45	1.45
22472890--22472922	12	2.6	13	85	9	50	54	0	0	45	0.99
22482740--22482919	29	6.2	29	75	1	119	24	24	13	37	1.91
22487942--22488235	50	5.8	50	83	1	354	20	29	22	26	1.98
22487942--22488224	101	2.8	101	92	0	451	20	30	22	26	1.98
22505217--22505290	37	2.0	37	97	0	139	40	22	2	33	1.69
22512965--22513012	21	2.4	21	86	10	66	72	2	18	6	1.15
22521719--22522389	70	9.6	70	77	3	530	29	25	18	26	1.98
22521710--22522379	140	4.8	140	79	3	591	29	25	18	26	1.98
22521764--22522379	210	2.9	210	80	1	599	29	25	18	25	1.98
22525102--22525126	8	3.1	8	100	0	50	12	24	0	64	1.27
22525171--22525214	23	1.9	22	82	17	54	38	22	0	38	1.55
22525388--22525527	50	2.8	51	81	6	176	30	28	15	25	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22529603--22530094	39	12.6	39	89	0	696	44	19	4	31	1.70
22533750--22533832	39	2.1	39	84	4	105	43	15	4	36	1.68
22536275--22536375	47	2.1	47	81	1	112	40	17	9	31	1.83
22539760--22540018	126	2.1	121	88	3	374	39	14	7	38	1.74
22545218--22545264	18	2.6	19	76	10	53	40	6	0	53	1.27
22548917--22549046	28	4.7	28	80	4	113	28	24	10	36	1.89
22551479--22551570	25	3.7	24	74	7	85	32	21	19	26	1.97
22553355--22553460	42	2.5	43	75	9	110	32	21	17	28	1.96
22559504--22559542	20	2.0	20	85	10	53	35	0	17	46	1.49
22567512--22567617	39	2.8	36	77	13	108	13	26	0	59	1.40
22573623--22573653	16	2.0	16	93	6	55	45	19	16	19	1.86
22575960--22575998	19	2.1	19	95	0	69	35	15	33	15	1.89
22592869--22592939	25	2.8	25	82	0	79	33	12	16	36	1.87
22598975--22599015	18	2.3	18	91	8	66	9	24	46	19	1.80
22601532--22601558	14	1.9	14	100	0	54	14	11	14	59	1.62
22602086--22602156	31	2.4	31	86	9	94	35	0	0	64	0.94
22602086--22602155	35	2.1	31	82	10	77	34	0	0	65	0.93
22602902--22603153	88	2.8	88	80	9	265	28	13	10	47	1.76
22603718--22603879	41	4.0	41	87	0	218	20	20	25	32	1.98
22604269--22604388	14	8.4	14	71	14	75	20	1	30	48	1.59
22604269--22604388	7	16.7	7	73	10	64	20	1	30	48	1.59
22604552--22604589	7	5.3	7	90	3	58	23	0	44	31	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22604540--22604589	14	3.5	14	86	5	64	26	0	38	36	1.57
22621700--22621756	26	2.2	26	100	0	114	50	19	10	19	1.75
22622222--22622341	22	5.2	22	74	9	89	54	6	16	22	1.65
22622222--22622452	22	10.4	22	66	15	84	52	9	16	21	1.71
22622376--22622513	70	2.0	71	80	7	156	54	8	16	20	1.68
22625376--22625443	30	2.3	29	82	10	75	48	2	1	47	1.26
22631638--22631762	62	2.1	59	80	7	135	39	4	9	47	1.55
22631745--22631783	14	2.8	14	96	0	69	58	7	15	17	1.59
22634791--22635184	126	3.1	125	86	4	512	30	16	15	37	1.90
22635243--22635362	34	3.6	33	80	4	132	43	15	0	40	1.52
22635245--22635370	68	1.9	67	84	1	171	42	14	1	41	1.55
22636566--22636608	20	2.2	20	95	0	77	65	4	6	23	1.37
22639296--22639800	268	1.9	265	85	2	708	35	14	19	31	1.91
22649589--22649633	7	6.3	7	82	5	54	13	0	37	48	1.42
22649585--22649633	22	2.2	22	89	7	73	12	0	40	46	1.41
22650026--22650803	225	3.4	226	89	3	1206	35	2	18	43	1.62
22655849--22655905	21	2.7	21	81	5	62	7	19	43	29	1.77
22658068--22658305	50	4.8	50	83	5	297	26	22	29	21	1.99
22658073--22658305	95	2.4	97	82	7	292	25	23	28	22	1.99
22661410--22661461	26	2.0	26	92	0	86	40	17	21	21	1.91
22665019--22665045	13	2.1	13	100	0	54	22	7	7	62	1.46
22665148--22665431	50	5.8	50	82	4	353	26	22	29	21	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22665148--22665431	95	2.9	97	85	7	342	26	22	29	21	1.99
22669914--22670197	50	5.8	50	84	4	380	25	22	30	21	1.99
22669910--22670197	95	2.9	98	87	5	402	26	21	30	21	1.98
22672593--22672634	11	3.7	11	87	3	57	47	2	28	21	1.63
22672590--22672639	22	2.3	22	83	10	66	52	2	28	18	1.56
22672592--22672639	11	4.4	11	80	15	55	52	2	27	18	1.57
22675689--22675716	6	4.7	6	100	0	56	53	0	0	46	1.00
22675625--22675800	96	1.8	96	91	6	293	44	11	6	37	1.67
22679120--22679403	91	3.0	91	86	7	356	46	2	3	47	1.33
22679120--22679335	44	4.8	44	70	17	147	46	2	4	46	1.36
22679120--22679360	47	5.3	46	70	20	175	46	2	3	46	1.35
22679353--22679661	59	5.2	59	69	12	261	43	3	4	49	1.39
22679412--22679722	61	5.2	61	69	16	261	43	3	5	47	1.43
22679342--22679751	120	3.4	120	98	0	784	43	2	4	48	1.38
22679583--22679619	16	2.2	17	86	13	51	40	2	0	56	1.13
22679703--22679737	18	2.0	17	88	5	52	45	0	0	54	0.99
22679894--22679990	45	2.2	45	85	5	126	32	27	5	34	1.79
22679968--22680006	16	2.4	16	91	0	60	20	30	5	43	1.73
22680128--22680189	32	1.9	32	96	0	115	56	12	0	30	1.37
22681365--22681407	22	2.0	22	86	9	61	41	0	13	44	1.44
22683016--22683054	19	2.0	20	85	5	53	61	0	7	30	1.24
22682986--22683054	20	3.5	20	68	18	54	62	0	5	31	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22685987--22686158	45	3.8	45	82	4	159	43	15	20	21	1.88
22686077--22686203	45	2.8	44	80	7	114	44	14	18	22	1.86
22694264--22694310	20	2.2	22	85	11	62	51	12	2	34	1.52
22711777--22711985	45	4.6	45	85	0	265	48	9	17	24	1.76
22714165--22714207	24	1.9	23	86	13	63	32	11	18	37	1.87
22724300--22724329	15	1.9	16	93	6	53	56	0	0	43	0.99
22734262--22734292	9	3.4	9	90	0	53	25	12	22	38	1.90
22734345--22734381	9	4.1	9	92	0	65	45	13	10	29	1.77
22734595--22734654	30	2.0	31	86	3	86	21	40	0	38	1.54
22739009--22739035	5	5.4	5	100	0	54	22	18	18	40	1.91
22739170--22739226	29	2.0	29	92	0	96	54	12	10	22	1.68
22742206--22742269	9	7.2	9	92	3	94	39	28	10	21	1.87
22742680--22742711	14	2.1	16	88	11	50	53	3	0	43	1.16
22748289--22748341	29	1.9	28	81	11	65	26	3	1	67	1.17
22751776--22751841	33	2.0	34	93	3	116	42	12	3	42	1.57
22752746--22752791	21	2.2	21	84	7	58	39	0	4	56	1.19
22753286--22753331	24	2.0	24	86	4	67	41	8	8	41	1.67
22754067--22754132	31	2.2	29	79	15	71	46	7	0	45	1.31
22756609--22757689	98	11.0	98	96	1	1986	28	9	24	37	1.88
22769056--22769178	45	2.7	45	79	12	144	27	21	26	24	1.99
22769256--22769374	45	2.6	45	74	12	118	28	19	25	26	1.99
22769342--22769628	44	6.7	42	72	8	177	28	20	22	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22769344--22769623	128	2.2	129	88	1	400	27	21	22	28	1.99
22769933--22769970	14	2.7	15	88	12	62	42	28	15	13	1.85
22771651--22771847	98	2.0	98	93	0	340	28	10	24	36	1.88
22776973--22777030	23	2.5	23	91	0	89	27	20	13	37	1.91
22785011--22785121	54	2.0	55	84	5	145	26	18	6	48	1.72
22792760--22792833	31	2.4	31	86	0	103	33	14	8	43	1.75
22793569--22793646	10	8.4	9	70	19	54	30	1	3	64	1.20
22793981--22794035	22	2.5	22	80	16	60	63	3	3	29	1.28
22794250--22794283	17	2.0	17	94	0	59	17	44	5	32	1.73
22796720--22796794	37	2.0	37	100	0	150	24	17	21	37	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126