genome.fa.s14.2.7.7.80.10.50.1000.118.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr12
Parameters: 2 7 7 80 10 50 1000
Length:  39383930

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  118  of  126  ( 15042 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36462110--36462325	45	4.8	45	88	0	290	34	26	12	25	1.92
36463575--36463703	57	2.2	58	77	10	131	39	6	3	51	1.43
36463601--36463724	58	2.2	57	81	10	137	39	5	4	50	1.45
36465838--36465913	38	2.0	39	92	2	127	36	22	15	25	1.93
36470070--36470169	50	2.0	50	100	0	200	20	4	34	42	1.70
36478770--36478897	50	2.6	49	78	1	130	28	22	27	21	1.99
36478781--36478962	49	3.7	49	77	3	143	29	21	25	23	1.99
36486912--36486945	16	2.1	16	88	5	50	8	0	14	76	1.01
36495880--36495936	28	2.0	28	96	0	105	35	14	22	28	1.93
36499725--36499782	19	2.7	22	84	10	68	36	8	17	37	1.80
36499988--36500032	23	2.0	23	86	0	63	22	0	11	66	1.22
36500310--36500390	36	2.2	37	78	14	87	38	8	2	50	1.46
36500512--36500561	14	3.5	14	78	5	64	30	2	0	68	1.01
36500507--36500564	29	2.0	29	93	0	98	31	3	0	65	1.09
36505058--36505133	38	2.0	38	100	0	152	31	26	26	15	1.96
36508660--36508922	40	6.6	39	86	4	278	25	27	21	25	1.99
36508660--36508922	120	2.2	119	82	4	307	25	27	21	25	1.99
36508854--36508931	40	1.9	41	82	10	97	26	28	20	24	1.99
36519344--36519583	44	5.7	44	79	12	288	25	17	27	28	1.98
36519422--36519579	78	2.0	78	89	7	241	24	18	28	29	1.98
36519502--36519618	44	2.7	44	81	5	121	27	18	25	28	1.98
36519378--36519601	122	1.8	122	86	5	328	25	18	25	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36519752--36520019	50	5.4	50	69	5	173	30	20	21	27	1.98
36519757--36520054	100	3.0	99	84	3	366	29	20	21	28	1.98
36525954--36526029	36	2.1	36	80	11	84	38	9	1	51	1.42
36526130--36526172	23	1.9	22	90	4	68	34	6	2	55	1.39
36529026--36529059	14	2.4	14	95	0	59	41	11	11	35	1.78
36529853--36529879	4	6.8	4	100	0	54	22	0	0	77	0.76
36530495--36530533	3	13.0	3	100	0	78	33	0	0	66	0.92
36533163--36533236	36	2.0	36	87	7	105	36	8	22	32	1.84
36536278--36536324	19	2.4	19	92	3	76	46	2	8	42	1.46
36539839--36539869	16	1.9	16	93	0	53	32	25	12	29	1.93
36549922--36549969	19	2.5	19	75	0	51	14	25	29	31	1.95
36552375--36552523	27	5.6	27	79	6	142	30	21	13	34	1.92
36552361--36552523	54	3.0	53	77	5	175	29	21	13	35	1.92
36556715--36556894	50	3.5	50	82	4	189	22	28	22	26	1.99
36564329--36564475	50	2.9	50	81	0	159	25	29	19	25	1.99
36570970--36571181	27	7.8	27	79	4	192	29	8	20	41	1.80
36570954--36571226	55	5.0	55	79	5	239	29	8	20	41	1.82
36570954--36571226	82	3.3	83	85	3	311	29	8	20	41	1.82
36570954--36571233	28	10.2	28	78	8	227	29	8	20	40	1.83
36573197--36573256	20	2.9	21	82	5	86	11	28	20	40	1.87
36573197--36573258	21	3.0	21	83	4	90	11	27	20	40	1.87
36578704--36578865	30	5.5	29	75	6	137	38	10	24	26	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36578729--36578896	89	1.9	90	85	3	232	39	10	23	27	1.86
36586326--36586352	10	2.7	10	100	0	54	14	0	29	55	1.40
36586566--36586696	55	2.4	54	84	6	165	28	23	20	27	1.99
36589346--36589403	21	2.6	21	71	17	55	31	20	6	41	1.79
36601102--36601140	18	2.2	17	86	13	53	33	0	20	46	1.51
36601369--36601487	23	5.2	23	85	4	159	21	17	26	33	1.96
36601366--36601480	46	2.5	46	92	0	194	21	18	26	33	1.96
36610050--36610249	50	3.9	50	80	7	206	26	21	29	23	1.99
36616153--36616221	35	2.0	35	85	5	95	18	18	27	34	1.95
36618951--36618983	9	3.3	10	91	8	50	27	0	0	72	0.85
36619178--36619215	17	2.2	17	95	0	67	44	21	13	21	1.85
36627507--36627532	13	2.0	13	100	0	52	46	15	7	30	1.74
36633110--36633144	10	3.2	11	88	12	54	17	37	0	45	1.48
36634741--36634765	7	3.6	7	100	0	50	28	0	12	60	1.32
36635963--36636878	29	34.3	28	75	19	728	44	26	0	28	1.55
36636147--36636878	23	28.4	23	71	23	356	44	26	0	28	1.56
36635947--36636878	51	17.6	52	73	18	627	44	26	0	28	1.56
36636240--36636281	22	2.0	21	95	4	75	42	28	0	28	1.56
36636479--36636520	22	2.0	21	95	4	75	42	28	0	28	1.56
36636891--36636932	17	2.4	18	80	4	50	42	9	2	45	1.49
36649350--36649499	41	3.7	41	80	1	194	21	22	27	29	1.99
36658383--36658427	24	1.9	23	86	4	63	42	15	20	22	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36669876--36670060	79	2.3	82	84	7	238	25	27	22	24	2.00
36669857--36670060	40	5.1	40	82	8	238	25	27	22	25	2.00
36677826--36678048	79	2.8	78	83	7	272	24	27	22	25	2.00
36677826--36678048	39	5.7	40	87	6	280	24	27	22	25	2.00
36682039--36682225	6	30.8	6	76	16	181	48	14	17	19	1.82
36682039--36682225	30	6.4	30	84	11	262	48	14	17	19	1.82
36682039--36682225	85	2.2	85	98	0	356	48	14	17	19	1.82
36682343--36682408	27	2.5	26	85	7	87	37	22	22	16	1.93
36682343--36682416	27	2.8	27	78	13	82	36	21	24	17	1.95
36682367--36682424	27	2.1	27	84	6	73	36	27	20	15	1.93
36682581--36682639	22	2.7	22	81	0	64	32	22	25	20	1.98
36682727--36682809	27	3.1	26	87	5	112	37	21	21	19	1.94
36683008--36683203	27	7.3	27	86	0	257	25	19	19	35	1.96
36683208--36683590	27	14.2	27	87	4	549	39	11	22	26	1.88
36686337--36686384	21	2.3	21	92	0	78	56	14	18	10	1.66
36691831--36691872	17	2.5	17	88	11	68	19	16	35	28	1.93
36694276--36694357	32	2.6	30	84	11	94	42	2	6	48	1.41
36695300--36695341	3	14.0	3	100	0	84	0	0	33	66	0.92
36698602--36698725	38	3.3	37	91	2	185	20	23	25	30	1.99
36701797--36701825	14	2.1	14	100	0	58	44	20	0	34	1.52
36705535--36705596	32	1.9	32	90	0	97	27	8	22	41	1.82
36709609--36709651	17	2.5	18	82	17	56	11	16	37	34	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36709641--36709694	18	3.1	18	81	2	65	16	20	27	35	1.94
36713441--36713480	21	1.9	21	89	0	62	25	7	20	47	1.75
36713688--36713729	22	1.9	22	90	0	66	19	33	19	28	1.96
36715726--36715840	57	2.0	58	93	1	196	41	14	10	33	1.80
36718990--36719021	17	1.9	16	93	6	55	87	0	12	0	0.54
36718989--36719023	18	1.9	18	94	0	61	88	0	11	0	0.51
36721252--36721383	67	2.0	65	86	2	183	32	6	16	43	1.74
36725028--36725059	17	1.9	17	93	6	57	37	21	6	34	1.79
36728350--36728390	21	2.0	21	90	0	64	26	41	7	24	1.81
36729973--36730249	145	1.9	145	97	0	527	31	13	24	31	1.93
36738616--36738791	46	3.8	46	81	4	219	20	21	30	28	1.98
36738612--36738783	93	1.8	93	93	0	299	20	21	30	27	1.98
36741706--36741783	15	5.2	15	78	6	86	11	15	15	57	1.65
36741715--36741794	15	5.4	14	75	10	61	10	16	13	60	1.59
36743486--36744063	27	21.4	27	85	2	723	27	23	9	39	1.85
36744068--36744261	27	7.2	27	80	5	205	35	18	19	26	1.95
36744076--36744260	80	2.3	80	85	0	235	35	18	20	25	1.95
36744068--36744262	54	3.6	54	83	4	250	35	18	19	26	1.95
36744462--36744543	27	3.1	26	85	5	101	20	21	19	37	1.94
36744631--36744689	22	2.7	22	83	0	73	20	23	22	33	1.97
36744854--36744927	27	2.8	25	84	10	85	17	24	21	36	1.95
36745045--36745224	6	29.8	6	75	17	169	19	17	14	48	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36745120--36745244	30	4.1	30	85	7	155	19	18	14	48	1.82
36747759--36747927	48	3.5	48	82	3	225	28	15	27	27	1.96
36758117--36758299	79	2.3	81	82	7	214	25	28	22	23	1.99
36758115--36758299	40	4.7	40	80	9	200	25	28	22	23	1.99
36759430--36759717	56	5.1	56	99	0	558	22	23	9	44	1.81
36764485--36764529	23	1.9	24	86	4	65	40	11	24	24	1.87
36766577--36766621	6	7.3	6	80	5	54	15	4	2	77	1.02
36766577--36766623	18	2.5	19	82	6	60	17	4	2	76	1.04
36769623--36769767	40	3.6	40	88	1	193	25	22	27	24	2.00
36771745--36771821	36	2.1	36	95	0	136	33	12	23	29	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126