genome.fa.s14.2.7.7.80.10.50.1000.119.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr12
Parameters: 2 7 7 80 10 50 1000
Length:  39383930

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  119  of  126  ( 15042 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36772102--36772126	13	1.9	13	100	0	50	28	32	32	8	1.86
36774788--36774969	49	3.7	49	86	2	274	24	19	26	28	1.99
36774783--36774969	100	1.9	100	97	0	356	24	20	26	28	1.99
36778122--36779278	47	24.6	47	98	0	2197	27	29	8	33	1.87
36779199--36779273	25	3.1	25	63	18	68	26	28	9	36	1.87
36783305--36783456	40	3.8	40	87	0	214	25	28	22	24	1.99
36790621--36790845	40	5.7	40	87	5	278	25	28	22	24	2.00
36790621--36790845	119	1.9	120	83	6	296	25	28	22	24	2.00
36796171--36796195	12	2.1	12	100	0	50	52	8	24	16	1.70
36806412--36806442	15	2.1	15	93	0	53	16	0	58	25	1.38
36812761--36812797	18	2.1	18	100	0	74	45	5	16	32	1.70
36814872--36814947	20	3.8	20	86	6	109	50	0	27	22	1.50
36817261--36817292	16	2.0	16	100	0	64	56	18	0	25	1.42
36819013--36819119	43	2.4	45	79	3	128	30	25	14	28	1.95
36819094--36819818	132	5.5	132	94	0	1225	29	23	18	28	1.97
36819124--36819483	44	8.2	45	65	15	144	28	24	19	27	1.98
36826660--36826755	19	4.7	21	79	10	74	40	15	6	37	1.73
36826660--36826717	22	2.6	22	81	7	64	41	17	5	36	1.72
36826696--36826768	19	3.8	19	92	0	128	36	15	9	38	1.80
36827005--36827061	22	2.4	24	82	11	64	63	7	1	28	1.30
36827731--36827763	13	2.5	13	100	0	66	30	9	21	39	1.84
36835820--36835975	33	4.6	33	68	23	90	16	19	28	36	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36835891--36835944	27	2.0	28	85	3	74	14	24	31	29	1.95
36835816--36836081	102	2.6	103	90	0	417	17	19	29	33	1.95
36842989--36843041	17	3.2	17	71	15	56	39	16	3	39	1.67
36859729--36859753	12	2.1	12	100	0	50	44	0	24	32	1.54
36865174--36865222	16	2.9	17	79	14	57	55	2	2	40	1.23
36865220--36865338	59	2.0	59	91	0	193	26	18	14	41	1.88
36868138--36868377	85	2.8	85	85	0	311	35	24	16	24	1.95
36868176--36868336	43	3.8	43	73	9	132	36	25	15	22	1.94
36868146--36868370	42	5.3	41	72	10	152	36	24	15	23	1.93
36875807--36875916	54	2.0	54	96	0	202	49	8	8	34	1.62
36881450--36881602	27	5.7	27	78	3	155	33	15	26	25	1.95
36881448--36881602	54	2.9	54	83	6	197	33	14	26	25	1.95
36881473--36881632	27	5.9	26	74	7	106	35	13	25	26	1.92
36881470--36881632	81	2.0	81	80	3	184	34	13	24	26	1.93
36897838--36897995	79	2.0	79	96	0	289	32	12	18	36	1.88
36899052--36899186	37	3.6	37	94	0	225	40	13	21	25	1.89
36899149--36899272	46	2.8	46	91	3	200	33	16	22	27	1.96
36901080--36901271	33	5.7	33	70	11	106	30	15	25	29	1.96
36901119--36901273	33	4.7	33	70	7	107	29	16	25	29	1.96
36901082--36901273	100	1.9	101	90	1	305	29	16	25	29	1.96
36901214--36901321	33	3.3	32	77	13	94	30	17	26	25	1.97
36905341--36905446	53	2.0	54	96	1	196	30	13	13	43	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36922528--36922571	22	2.0	22	95	0	79	22	27	25	25	2.00
36931282--36931314	15	2.2	15	94	0	57	42	6	3	48	1.43
36933353--36933386	16	2.1	17	88	5	52	29	0	0	70	0.87
36933440--36933473	16	2.1	17	88	5	52	70	0	0	29	0.87
36940664--36940702	20	2.0	20	90	10	62	56	5	23	15	1.59
36947841--36947936	50	1.9	50	84	0	129	30	25	27	17	1.97
36948233--36948281	20	2.5	20	78	15	57	57	8	20	14	1.63
36953958--36954197	40	6.1	40	77	3	200	37	17	28	15	1.91
36954012--36954197	78	2.3	80	76	1	187	38	17	27	15	1.90
36965940--36965978	19	2.1	19	100	0	78	53	5	15	25	1.62
36971040--36971407	182	2.0	182	94	0	637	36	16	14	32	1.89
36972163--36972224	27	2.3	28	86	8	85	22	14	19	43	1.87
36972178--36972274	27	3.6	27	72	0	95	23	11	21	43	1.85
36986939--36987007	25	2.7	25	84	4	75	23	27	23	26	2.00
36994132--36994259	29	4.4	29	85	0	175	40	11	22	25	1.88
36994132--36994259	58	2.2	58	90	0	193	40	11	22	25	1.88
36994241--36994320	29	2.8	29	81	7	108	40	12	26	21	1.89
36997178--36997220	23	1.9	22	90	4	68	34	2	0	62	1.08
36997931--36997981	7	7.7	7	82	8	54	58	17	5	17	1.57
37001838--37001913	27	2.8	27	71	0	71	18	25	30	26	1.98
37008845--37008887	21	2.0	21	95	0	77	23	34	13	27	1.93
37025874--37025924	25	2.0	25	92	0	84	35	17	21	25	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37030405--37030453	25	2.0	25	91	0	80	32	16	22	28	1.95
37031468--37031542	37	2.0	37	100	0	150	18	21	13	46	1.83
37034381--37034464	35	2.4	35	97	0	159	33	10	16	39	1.83
37036547--37036671	27	4.7	26	77	6	99	41	19	17	21	1.90
37037915--37037939	10	2.5	10	100	0	50	16	0	20	64	1.30
37037823--37037972	74	2.0	76	88	2	223	24	6	19	50	1.71
37039936--37039997	18	3.3	18	80	12	70	64	1	24	9	1.33
37041712--37041769	19	3.1	19	94	0	98	27	10	12	50	1.72
37041717--37041769	9	5.7	9	73	8	52	28	7	13	50	1.68
37041867--37041913	10	4.8	10	86	5	69	25	0	19	55	1.43
37041867--37041913	19	2.4	20	92	3	78	25	0	19	55	1.43
37041882--37042020	74	1.9	74	92	0	233	25	5	20	47	1.72
37041961--37041987	10	2.7	10	100	0	54	22	0	22	55	1.44
37050910--37050938	13	2.1	14	93	6	51	68	17	0	13	1.20
37058722--37058837	40	2.9	41	84	2	153	25	29	12	33	1.92
37059283--37059322	21	2.0	21	85	5	55	12	22	0	65	1.26
37066839--37066942	34	3.0	34	82	1	136	43	20	24	12	1.86
37074507--37074554	5	9.6	5	86	0	69	25	35	0	39	1.56
37074507--37074554	15	3.2	15	90	0	78	25	35	0	39	1.56
37075463--37075511	23	2.1	23	100	0	98	30	26	16	26	1.97
37075486--37075829	153	2.3	149	82	5	404	29	25	14	29	1.95
37075488--37075829	51	6.7	51	80	5	347	29	25	14	29	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37075488--37075830	102	3.4	102	86	1	458	30	25	14	29	1.95
37080579--37080743	41	4.1	41	77	4	174	37	19	18	24	1.94
37080575--37080727	82	1.9	81	83	6	202	34	18	20	26	1.96
37080575--37080739	81	2.0	81	82	6	201	35	20	19	24	1.95
37082102--37082249	74	2.0	74	98	0	287	29	12	14	44	1.81
37083664--37083722	29	2.0	29	90	0	91	38	11	1	47	1.50
37088807--37088928	60	2.0	60	98	0	235	33	4	8	53	1.52
37091130--37091457	173	1.9	173	81	6	396	28	23	20	28	1.99
37091071--37091591	217	2.4	220	93	2	879	27	22	20	28	1.99
37091077--37091594	44	11.8	44	72	11	300	27	23	20	28	1.99
37091671--37091856	44	4.2	44	65	10	119	24	25	21	27	1.99
37091579--37091967	132	2.9	132	95	0	688	24	25	21	29	1.99
37093230--37093278	12	4.0	12	89	5	71	2	0	12	85	0.68
37093230--37093277	7	7.4	7	82	15	59	2	0	10	87	0.62
37093230--37093277	19	2.5	19	87	9	71	2	0	10	87	0.62
37097576--37097653	29	2.7	28	84	11	104	25	14	30	29	1.94
37097606--37097933	174	1.9	174	96	0	602	29	14	24	30	1.95
37106186--37106249	32	2.0	32	93	0	110	46	17	4	31	1.68
37108286--37108381	41	2.3	41	87	0	129	27	16	22	33	1.96
37117944--37118054	41	2.7	41	81	5	125	35	17	27	20	1.95
37121199--37121233	18	1.9	18	94	0	61	28	14	11	45	1.79
37124138--37124163	13	2.0	13	100	0	52	53	0	0	46	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37133643--37133768	48	2.6	48	83	0	144	22	32	19	25	1.97
37137030--37137121	22	4.2	22	88	0	112	30	27	0	42	1.56
37137071--37137173	52	2.0	51	83	9	129	33	32	0	34	1.58
37137123--37137164	22	1.9	22	90	0	66	33	33	0	33	1.58
37137208--37137270	29	2.1	30	88	2	92	36	0	1	61	1.05
37137840--37138119	124	2.3	125	85	4	372	32	25	13	28	1.94
37139376--37139521	30	4.9	29	72	12	93	32	17	6	44	1.73
37139376--37139552	90	2.0	88	84	4	230	32	17	6	44	1.74
37140108--37140181	23	3.7	19	78	16	78	79	4	14	1	0.94
37140270--37140357	4	21.5	4	72	23	51	71	1	27	0	0.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126