genome.fa.s14.2.7.7.80.10.50.1000.42.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr12
Parameters: 2 7 7 80 10 50 1000
Length:  39383930

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  42  of  126  ( 15042 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12348937--12348983	21	2.2	22	88	3	69	19	31	6	42	1.76
12356313--12356345	17	2.1	17	88	11	52	30	33	24	12	1.91
12369982--12370012	13	2.3	14	94	5	55	32	3	19	45	1.66
12372294--12372391	49	2.0	51	89	4	155	34	28	12	24	1.91
12401461--12401684	80	2.8	81	82	3	254	19	21	29	29	1.98
12401461--12401684	41	5.6	40	84	5	236	19	21	29	29	1.98
12401997--12402038	21	2.0	21	90	4	68	33	0	19	47	1.49
12402091--12402123	14	2.3	15	89	5	50	33	0	30	36	1.58
12402146--12402189	21	2.2	20	83	4	52	22	0	45	31	1.53
12403236--12403602	148	2.5	148	89	3	585	38	12	14	34	1.84
12403627--12403861	121	1.9	122	95	0	427	37	16	10	35	1.82
12422264--12422329	28	2.4	28	84	2	80	31	22	21	24	1.98
12422743--12422816	27	2.8	25	84	10	85	20	18	24	36	1.95
12423030--12423056	9	3.0	9	100	0	54	22	44	11	22	1.84
12425660--12425690	9	3.4	9	95	0	53	29	9	12	48	1.73
12427132--12427168	19	1.9	19	88	0	56	2	27	2	67	1.17
12427983--12428041	30	2.0	30	96	0	109	35	10	13	40	1.78
12441070--12441100	16	1.9	16	93	0	53	61	9	0	29	1.28
12441126--12441173	24	2.0	25	91	4	80	16	12	10	60	1.58
12450030--12450071	21	2.0	20	82	13	50	61	19	7	11	1.52
12454912--12454960	26	1.9	25	100	0	89	28	30	8	32	1.86
12456492--12456517	6	4.3	6	100	0	52	50	34	15	0	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12457528--12457562	16	2.3	15	90	5	52	22	2	0	74	0.95
12457528--12457562	5	6.8	5	87	6	52	22	2	0	74	0.95
12458812--12458843	6	5.3	6	96	0	55	43	0	53	3	1.16
12459256--12459298	15	2.9	15	100	0	86	25	11	0	62	1.29
12461834--12461925	38	2.4	38	85	5	114	45	9	8	35	1.68
12462462--12462491	6	5.0	6	91	0	51	0	36	33	30	1.58
12464149--12464194	23	2.0	23	100	0	92	26	26	8	39	1.85
12473839--12473888	24	2.1	24	96	0	91	28	20	36	16	1.93
12473863--12474076	50	4.3	50	76	2	182	28	22	27	21	1.99
12482065--12482097	16	2.0	17	88	5	50	30	9	12	48	1.71
12484038--12484081	22	2.0	22	86	0	61	31	2	27	38	1.69
12488367--12488505	70	2.0	70	97	0	260	54	13	12	18	1.70
12490590--12490699	44	2.5	44	82	5	134	30	20	21	27	1.98
12491014--12491235	88	2.5	88	86	2	320	19	22	27	30	1.98
12491104--12491244	44	3.2	45	68	5	126	19	25	25	29	1.99
12491218--12492424	44	27.4	44	76	5	1085	29	25	17	28	1.97
12491220--12492423	132	9.1	132	96	0	2088	29	25	17	28	1.97
12491220--12492423	265	4.6	264	96	0	2097	29	25	17	28	1.97
12499718--12499754	17	2.2	17	100	0	74	24	10	21	43	1.84
12510172--12510238	28	2.4	29	76	16	70	32	1	4	61	1.25
12511790--12511841	21	2.5	21	90	0	77	30	34	9	25	1.88
12513620--12513920	149	2.0	149	100	0	602	33	14	10	41	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12514018--12514051	18	1.9	18	88	5	52	32	14	11	41	1.82
12514414--12514441	12	2.3	12	100	0	56	57	0	0	42	0.99
12521795--12521827	16	2.1	16	88	11	50	66	9	3	21	1.33
12522549--12523467	44	21.2	43	68	14	340	28	22	19	29	1.98
12522550--12523553	217	4.6	217	91	0	1638	28	22	19	28	1.98
12536846--12536878	16	2.1	16	88	11	50	66	9	3	21	1.33
12538797--12538826	5	5.8	5	92	7	51	40	0	0	60	0.97
12538797--12538826	11	2.8	11	95	5	53	40	0	0	60	0.97
12560038--12560134	41	2.4	41	87	3	142	24	15	27	31	1.95
12560824--12561068	46	5.3	46	90	0	373	26	14	18	40	1.89
12564589--12564685	30	3.2	30	75	4	97	45	2	6	46	1.40
12567378--12567407	15	2.0	15	93	0	51	13	10	10	66	1.44
12567078--12567711	332	1.9	332	98	0	1232	25	21	18	34	1.96
12572769--12573211	70	6.3	70	76	5	367	33	21	17	27	1.96
12572769--12573211	140	3.2	139	80	2	458	33	21	17	27	1.96
12572783--12573232	210	2.1	210	81	2	537	32	22	16	28	1.96
12574358--12574386	14	2.1	14	100	0	58	37	20	20	20	1.94
12577096--12577156	30	2.0	30	90	0	95	24	9	24	40	1.85
12579595--12579653	25	2.4	25	100	0	118	30	25	16	27	1.97
12582148--12582193	20	2.3	20	96	3	85	15	21	8	54	1.68
12587057--12587156	49	2.0	49	86	3	139	30	15	12	43	1.82
12588011--12588093	42	2.0	42	85	0	112	38	16	21	22	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12593374--12593449	11	6.8	12	71	23	58	27	32	0	39	1.57
12593397--12593453	22	2.6	22	86	2	89	31	33	0	35	1.58
12593419--12593534	51	2.3	51	93	0	196	26	25	2	44	1.67
12594674--12594698	7	3.6	7	100	0	50	28	0	12	60	1.32
12595860--12595997	25	5.7	25	78	14	155	41	1	13	44	1.52
12595817--12595997	95	1.9	93	94	2	317	40	1	12	45	1.49
12595807--12595974	50	3.7	44	78	13	196	39	1	12	47	1.49
12595993--12596755	23	32.5	23	70	23	364	46	24	0	28	1.56
12596013--12596283	29	9.3	29	72	21	185	45	25	0	28	1.59
12596068--12596127	21	2.9	21	90	5	95	48	23	0	28	1.51
12596120--12596446	52	6.6	51	75	17	248	46	24	0	28	1.55
12596266--12596322	21	2.7	21	91	5	89	47	22	0	29	1.52
12596020--12596397	199	1.9	202	92	4	640	46	24	0	28	1.57
12596271--12596757	45	10.8	45	75	18	425	46	24	0	28	1.55
12596342--12596397	29	1.9	29	100	0	112	46	26	0	26	1.53
12596271--12596728	66	6.8	66	90	8	694	46	24	0	28	1.53
12596064--12596757	132	5.0	133	80	15	559	46	24	0	28	1.55
12596115--12596755	23	27.6	23	71	23	376	46	24	0	28	1.55
12596760--12596998	116	2.1	115	95	0	424	38	7	9	44	1.66
12600012--12600391	126	3.0	126	90	2	604	31	21	16	30	1.95
12603061--12603516	223	2.0	223	98	0	885	38	21	10	29	1.87
12608529--12608737	92	2.3	91	86	5	278	45	3	3	46	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12608665--12608712	26	1.9	25	84	16	64	45	0	2	52	1.12
12608887--12608928	15	2.7	16	82	14	52	45	0	2	52	1.13
12608878--12608919	15	2.9	15	82	10	52	47	0	0	52	1.00
12609056--12609160	44	2.5	40	76	15	113	31	29	4	34	1.78
12609054--12609163	45	2.6	44	81	8	131	31	29	5	33	1.80
12609144--12609195	16	3.2	16	94	0	86	34	36	0	28	1.58
12624267--12624305	21	2.0	20	85	10	53	35	10	5	48	1.59
12627453--12627541	28	3.1	28	83	4	99	23	12	7	56	1.62
12635395--12635563	28	6.0	28	78	12	141	19	17	6	56	1.62
12635413--12635563	56	2.7	55	79	9	164	19	16	6	57	1.60
12636118--12636285	84	2.0	86	82	4	207	32	20	17	29	1.95
12638055--12638101	15	2.9	17	84	12	55	36	4	8	51	1.52
12639581--12639620	21	1.9	21	89	0	62	52	5	0	42	1.23
12640213--12640553	172	2.0	173	96	0	630	26	20	22	29	1.99
12646673--12646771	42	2.4	42	91	0	153	20	34	23	22	1.97
12657769--12657956	45	4.2	45	82	8	179	35	25	16	22	1.95
12659575--12659622	24	2.0	24	91	0	78	31	12	25	31	1.92
12665579--12665622	22	2.0	21	83	12	54	40	0	0	59	0.98
12667725--12667909	50	3.7	50	77	11	191	29	28	17	25	1.97
12675946--12676168	43	5.2	43	79	6	206	24	17	26	30	1.97
12675975--12676172	85	2.3	85	84	3	229	25	18	25	30	1.98
12677149--12677574	44	9.7	43	81	7	430	24	25	21	29	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12677150--12677574	175	2.4	175	97	0	787	24	25	21	29	1.99
12677152--12677571	131	3.2	131	81	3	479	24	25	20	29	1.99
12677889--12677942	24	2.2	24	83	6	65	31	25	9	33	1.88
12678365--12678576	108	1.9	110	86	3	304	49	7	16	26	1.72
12690550--12690579	13	2.3	13	94	0	51	0	56	0	43	0.99
12695610--12695651	16	2.6	16	96	0	75	16	0	16	66	1.25
12698067--12698335	33	7.8	33	74	17	201	20	20	26	31	1.98
12698094--12698334	108	2.2	108	93	0	410	21	20	26	32	1.97
12701811--12701911	48	2.1	47	88	1	148	29	4	11	53	1.58
12702464--12702509	6	7.7	6	87	0	65	2	30	45	21	1.64

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126