genome.fa.s14.2.7.7.80.10.50.1000.58.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr12
Parameters: 2 7 7 80 10 50 1000
Length:  39383930

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  58  of  126  ( 15042 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16945874--16945995	44	2.8	44	81	5	113	29	20	22	27	1.99
16945805--16946716	175	5.3	173	89	2	1395	30	19	20	28	1.98
16945669--16946680	345	3.0	345	91	1	1636	30	19	21	28	1.98
16946561--16947006	129	3.5	128	88	2	615	31	17	20	29	1.96
16946570--16947095	258	2.0	254	78	5	538	30	19	21	27	1.98
16948373--16948405	3	11.0	3	100	0	66	33	0	0	66	0.92
16949435--16949486	24	2.2	24	89	0	77	55	9	1	32	1.43
16952197--16952275	21	3.6	21	70	18	61	39	0	3	56	1.17
16952205--16952246	19	2.2	19	83	8	50	42	0	0	57	0.99
16952235--16952275	21	2.0	21	90	4	66	34	0	4	60	1.18
16952186--16952264	21	3.1	26	72	22	78	41	1	2	54	1.22
16957737--16957773	15	2.5	15	100	0	74	48	8	8	35	1.62
16965256--16965345	45	2.0	44	84	2	117	33	5	27	33	1.80
16965516--16965550	18	2.0	17	88	5	52	54	0	0	45	0.99
16965606--16965660	14	4.1	14	80	11	62	56	1	0	41	1.10
16965499--16965790	119	2.4	121	93	2	509	50	5	2	42	1.37
16965731--16966013	91	3.0	93	84	7	317	48	3	3	44	1.35
16965831--16965891	28	2.2	28	85	5	81	50	3	0	45	1.17
16965838--16965981	47	3.1	46	65	23	113	49	4	2	44	1.33
16965806--16966013	91	2.3	90	90	4	326	46	4	3	45	1.39
16965831--16965973	44	3.2	43	68	16	119	48	3	2	46	1.31
16965856--16965994	47	3.0	47	68	17	137	49	4	2	43	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16967090--16967117	13	2.2	13	100	0	56	60	17	0	21	1.36
16968827--16968852	13	2.0	13	100	0	52	53	7	0	38	1.30
16970689--16970716	13	2.2	13	100	0	56	64	21	14	0	1.29
16973243--16973284	14	2.9	15	83	13	52	42	4	2	50	1.36
16973258--16973284	14	1.9	14	100	0	54	37	7	3	51	1.48
16980616--16980658	18	2.4	18	96	0	77	30	30	30	9	1.88
16980822--16980862	21	2.0	21	85	9	57	36	24	14	24	1.93
16987693--16987732	21	2.0	21	85	5	55	47	10	7	35	1.65
16988048--16988089	19	2.2	20	87	12	61	57	7	0	35	1.26
16988548--16988600	12	4.6	12	73	17	58	26	30	0	43	1.55
16991692--16991736	18	2.6	16	83	13	54	37	4	2	55	1.32
16991787--16991826	21	1.9	21	89	0	62	32	10	0	57	1.32
16994159--16994279	22	5.6	21	84	6	145	47	29	0	21	1.56
16994162--16994373	44	4.7	44	76	12	189	51	28	0	18	1.53
16994240--16994398	29	5.2	29	71	16	117	50	30	0	18	1.52
16994240--16994313	7	10.4	7	71	17	55	50	32	1	16	1.54
16994269--16994373	22	4.8	22	84	0	138	54	29	0	15	1.48
16996622--16997386	177	4.3	177	81	4	699	30	24	15	29	1.96
16996726--16997383	264	2.5	265	86	3	885	30	24	15	29	1.95
16996611--16997386	44	17.6	44	77	6	692	31	24	15	29	1.95
17009383--17009421	21	1.9	19	90	10	60	76	2	7	12	1.09
17014821--17014854	16	2.1	17	88	5	52	35	2	11	50	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17015204--17015260	27	2.1	27	93	0	96	35	10	19	35	1.86
17015954--17015988	13	2.7	13	100	0	70	17	8	25	48	1.75
17018894--17018923	14	2.2	14	94	5	53	70	13	6	10	1.34
17018905--17018994	32	2.8	32	77	17	96	68	8	2	20	1.27
17018973--17019004	13	2.4	14	94	5	57	84	3	0	12	0.74
17019503--17019605	44	2.3	46	77	13	106	33	31	0	35	1.58
17027005--17027060	7	8.0	7	82	7	69	39	0	28	32	1.57
17041946--17042015	25	2.8	24	83	14	81	32	15	24	27	1.95
17041967--17042015	25	2.0	25	95	0	89	34	16	24	24	1.95
17044187--17044213	11	2.5	11	100	0	54	40	14	14	29	1.86
17045090--17045687	313	1.9	308	86	2	822	38	15	18	27	1.91
17046189--17046214	12	2.2	12	100	0	52	26	7	38	26	1.83
17048485--17048524	21	1.9	21	84	0	53	35	12	22	30	1.91
17056289--17056314	13	2.0	13	100	0	52	30	0	7	61	1.24
17056522--17056561	20	2.1	18	86	13	53	25	10	2	62	1.39
17056607--17056917	110	2.9	109	86	2	421	29	16	19	34	1.94
17060961--17061016	24	2.4	23	88	8	78	71	8	8	10	1.31
17061883--17061908	13	2.0	13	100	0	52	69	0	15	15	1.20
17063093--17063838	87	8.6	87	90	1	1111	30	22	22	24	1.99
17063884--17064114	44	5.0	44	72	13	196	32	20	20	25	1.97
17063817--17064171	142	2.5	142	98	0	674	33	18	21	25	1.96
17066117--17066142	13	2.0	13	100	0	52	30	0	7	61	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17066335--17066374	20	2.1	18	86	13	53	25	10	2	62	1.39
17066420--17066730	110	2.9	109	88	2	430	29	15	19	34	1.93
17072446--17072791	174	2.0	173	96	0	638	34	13	12	39	1.82
17083685--17083734	11	4.5	11	92	0	82	32	8	0	60	1.26
17086161--17086321	3	53.7	3	97	0	304	65	0	0	33	1.02
17090777--17090819	20	2.2	20	82	0	50	60	0	0	39	0.97
17093037--17093077	22	2.0	20	85	9	55	41	4	19	34	1.73
17094372--17094555	43	4.1	43	79	10	208	21	30	21	26	1.98
17094975--17095077	43	2.4	43	95	0	179	29	27	16	27	1.97
17095094--17095127	16	2.1	16	88	0	50	55	8	0	35	1.31
17096070--17096492	192	2.2	192	81	5	471	42	19	9	29	1.82
17096948--17096983	18	2.0	18	100	0	72	44	22	16	16	1.86
17098562--17098601	20	2.0	20	100	0	80	35	10	25	30	1.88
17103063--17103102	20	2.0	20	95	0	71	35	7	25	32	1.84
17103071--17103115	20	2.2	20	84	7	56	33	11	26	28	1.91
17108353--17108391	9	4.3	9	83	0	51	28	2	15	53	1.55
17108353--17108391	18	2.2	18	95	0	69	28	2	15	53	1.55
17109853--17109899	19	2.5	19	86	6	60	8	14	6	70	1.32
17110087--17110136	26	1.9	26	100	0	100	18	42	32	8	1.79
17110675--17110713	3	13.0	3	88	0	60	30	2	2	64	1.21
17110850--17110927	39	2.0	39	82	0	93	34	8	5	51	1.56
17111227--17111553	110	3.0	110	89	1	478	32	14	18	35	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17114899--17114966	6	11.7	6	78	9	52	72	8	5	13	1.28
17115942--17115979	10	3.7	10	93	6	67	89	10	0	0	0.49
17115942--17115979	11	3.5	11	89	3	60	89	10	0	0	0.49
17115942--17115979	13	3.1	12	85	14	51	89	10	0	0	0.49
17117292--17117473	100	1.8	100	85	4	260	35	23	19	21	1.96
17117461--17117510	25	2.0	25	84	0	64	36	20	18	26	1.95
17117578--17118330	44	17.6	42	69	12	385	30	22	20	25	1.98
17117573--17118383	129	6.3	129	92	1	1254	31	22	20	25	1.98
17119381--17119427	19	2.5	19	86	6	60	8	14	6	70	1.32
17120177--17120226	3	16.7	3	82	0	64	36	2	2	60	1.20
17120241--17120308	24	2.8	25	76	14	70	35	11	1	51	1.48
17120353--17120430	39	2.0	39	82	0	93	34	8	5	51	1.56
17120726--17121274	110	5.0	111	92	1	888	30	15	19	34	1.93
17120726--17121274	221	2.5	221	93	1	931	30	15	19	34	1.93
17123119--17123169	15	3.6	14	82	12	52	72	1	3	21	1.11
17123144--17123173	12	2.5	12	100	0	60	63	0	0	36	0.95
17125266--17125325	29	2.1	29	100	0	120	46	3	10	40	1.54
17128870--17128894	2	12.5	2	100	0	50	48	0	0	52	1.00
17130280--17130313	18	1.9	18	88	5	52	76	0	14	8	1.01
17132294--17132335	17	2.5	17	88	0	57	42	38	16	2	1.61
17133685--17133745	22	2.8	21	79	16	61	29	6	4	59	1.44
17137156--17137193	20	2.0	20	85	15	53	39	2	13	44	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17145468--17145584	44	2.7	43	79	11	132	30	21	20	27	1.98
17145066--17146075	532	1.9	524	83	6	1300	32	17	21	29	1.96
17146004--17146195	96	2.0	96	92	2	323	26	23	21	28	1.99
17146143--17146562	45	9.6	45	69	14	184	28	20	23	26	1.99
17146100--17146547	217	2.1	217	90	0	691	28	21	22	27	1.99
17146819--17146860	17	2.5	17	88	0	57	42	38	16	2	1.61
17148207--17148267	22	2.8	21	79	16	61	27	8	4	59	1.47
17154598--17154656	24	2.5	24	91	5	93	42	6	1	49	1.39
17158073--17158099	14	1.9	14	100	0	54	14	22	14	48	1.81
17160818--17160958	64	2.2	64	97	0	264	37	16	10	35	1.83

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126